Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTAAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGAAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAAATTTTGCGGTATGGAAAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAATAA
mRNA sequence
ATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTAAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGAAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAAATTTTGCGGTATGGAAAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAATAA
Coding sequence (CDS)
ATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTAAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGAAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAAATTTTGCGGTATGGAAAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAATAA
Protein sequence
MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSANFAVWKDEYSMLRRDYDNVRGQVE
Homology
BLAST of Cla97C04G069650 vs. NCBI nr
Match:
KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 77/146 (52.74%), Postives = 106/146 (72.60%), Query Frame = 0
Query: 1 MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
+++KNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113
Query: 61 VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
++ LQ+S +EYKSQL E E +N LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173
Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
S +F +WKDEY LRR YD+ ++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRME 199
BLAST of Cla97C04G069650 vs. NCBI nr
Match:
KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 144.4 bits (363), Expect = 7.5e-31
Identity = 76/146 (52.05%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
M++KNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113
Query: 61 VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
++ LQ+ +EYKSQL E + +N LQ+ V S E QLL+CR AREV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173
Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
S +F +WKDEY LRR YD+ G++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRME 199
BLAST of Cla97C04G069650 vs. NCBI nr
Match:
KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 79/152 (51.97%), Postives = 115/152 (75.66%), Query Frame = 0
Query: 2 KRKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
+ KN + LR+++ VL E E +E + KEL+ ELE ++KV +FQSAL EQ TS+
Sbjct: 41 QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100
Query: 62 QKIVAEVKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLK 121
Q+I A ++ LQNS KEYK ++TE + +N LLQE V S EHQLL+CRNAREVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160
Query: 122 KEYQEMSANFAVWKDEYSMLRRDYDNVRGQVE 147
E++E+ A+FA+W+DEY+++R Y++V+GQ+E
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIE 192
BLAST of Cla97C04G069650 vs. NCBI nr
Match:
XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])
HSP 1 Score: 128.3 bits (321), Expect = 5.6e-26
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0
Query: 1 MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
+++KNKRLLR++ LH E E +KE FQ+AL EQA SSQ+
Sbjct: 80 VRKKNKRLLRNIANLHEEIEAEKE------------------FQNALHEQAISSQQTAMG 139
Query: 61 VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
++ LQ+S +EYKSQL E E +N LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 140 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 199
Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
S +F +WKDEY LRR YD+ ++E
Sbjct: 200 SIDFMMWKDEYETLRRKYDDAIRRME 207
BLAST of Cla97C04G069650 vs. NCBI nr
Match:
KAA0034829.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 109.4 bits (272), Expect = 2.7e-20
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 0
Query: 2 KRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEV 61
K+K +L ++ D L+ EA ++ K L + +AN +E + T+ E+
Sbjct: 172 KQKRLQLEKENDSLNTEAIQVRKKNKSLLRN-------IANLHEEIEAKTTT-----MEI 231
Query: 62 KNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMS 121
+ LQNS KEYKSQL +VE++N LQ+ V S E QLL+CR A+EV+TDDYAQL ++YQEMS
Sbjct: 232 EVLQNSIKEYKSQLIQVENKNRFLQKAVNSSESQLLICRKAKEVLTDDYAQLIEKYQEMS 291
Query: 122 ANFAVWKDEYSMLRRDYDNVRGQVE 147
+F +WKDEY LRR YD+ G++E
Sbjct: 292 IDFMMWKDEYETLRRKYDDAIGRME 304
BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match:
A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 77/146 (52.74%), Postives = 106/146 (72.60%), Query Frame = 0
Query: 1 MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
+++KNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113
Query: 61 VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
++ LQ+S +EYKSQL E E +N LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173
Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
S +F +WKDEY LRR YD+ ++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRME 199
BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match:
A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 76/146 (52.05%), Postives = 105/146 (71.92%), Query Frame = 0
Query: 1 MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
M++KNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113
Query: 61 VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
++ LQ+ +EYKSQL E + +N LQ+ V S E QLL+CR AREV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173
Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
S +F +WKDEY LRR YD+ G++E
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRME 199
BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match:
A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 79/152 (51.97%), Postives = 115/152 (75.66%), Query Frame = 0
Query: 2 KRKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
+ KN + LR+++ VL E E +E + KEL+ ELE ++KV +FQSAL EQ TS+
Sbjct: 41 QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100
Query: 62 QKIVAEVKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLK 121
Q+I A ++ LQNS KEYK ++TE + +N LLQE V S EHQLL+CRNAREVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160
Query: 122 KEYQEMSANFAVWKDEYSMLRRDYDNVRGQVE 147
E++E+ A+FA+W+DEY+++R Y++V+GQ+E
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIE 192
BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match:
A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0
Query: 1 MKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
+++KNKRLLR++ LH E E +KE FQ+AL EQA SSQ+
Sbjct: 80 VRKKNKRLLRNIANLHEEIEAEKE------------------FQNALHEQAISSQQTAMG 139
Query: 61 VKNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
++ LQ+S +EYKSQL E E +N LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 140 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 199
Query: 121 SANFAVWKDEYSMLRRDYDNVRGQVE 147
S +F +WKDEY LRR YD+ ++E
Sbjct: 200 SIDFMMWKDEYETLRRKYDDAIRRME 207
BLAST of Cla97C04G069650 vs. ExPASy TrEMBL
Match:
A0A5A7T0F3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00700 PE=4 SV=1)
HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 0
Query: 2 KRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEV 61
K+K +L ++ D L+ EA ++ K L + +AN +E + T+ E+
Sbjct: 172 KQKRLQLEKENDSLNTEAIQVRKKNKSLLRN-------IANLHEEIEAKTTT-----MEI 231
Query: 62 KNLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMS 121
+ LQNS KEYKSQL +VE++N LQ+ V S E QLL+CR A+EV+TDDYAQL ++YQEMS
Sbjct: 232 EVLQNSIKEYKSQLIQVENKNRFLQKAVNSSESQLLICRKAKEVLTDDYAQLIEKYQEMS 291
Query: 122 ANFAVWKDEYSMLRRDYDNVRGQVE 147
+F +WKDEY LRR YD+ G++E
Sbjct: 292 IDFMMWKDEYETLRRKYDDAIGRME 304
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0025321.1 | 2.6e-31 | 52.74 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0065294.1 | 7.5e-31 | 52.05 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0033848.1 | 2.2e-30 | 51.97 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia... | [more] |
XP_008464352.1 | 5.6e-26 | 50.00 | PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo] | [more] |
KAA0034829.1 | 2.7e-20 | 45.52 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SM49 | 1.3e-31 | 52.74 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7VDD9 | 3.6e-31 | 52.05 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3BQ93 | 1.1e-30 | 51.97 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A1S3CLQ1 | 2.7e-26 | 50.00 | glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... | [more] |
A0A5A7T0F3 | 1.3e-20 | 45.52 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |