Cla97C03G055780 (gene) Watermelon (97103) v2.5

Overview
NameCla97C03G055780
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionglycine-rich protein 5-like
LocationCla97Chr03: 4705919 .. 4706284 (-)
RNA-Seq ExpressionCla97C03G055780
SyntenyCla97C03G055780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTGGCTTTCAAAATTCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGACTTCAGAGACCAGAAAACTTGTAATTAGCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTCCAGTTCTTTCCTGGATACGGCGGCGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGCGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGTGGCGGCGGAGGGTTTGGCGGTGTTGGTGACGGTGGCGCTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTTCCTTGA

mRNA sequence

ATGGGTTCTTTGGCTTTCAAAATTCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGACTTCAGAGACCAGAAAACTTGTAATTAGCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTCCAGTTCTTTCCTGGATACGGCGGCGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGCGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGTGGCGGCGGAGGGTTTGGCGGTGTTGGTGACGGTGGCGCTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTTCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTGGCTTTCAAAATTCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGACTTCAGAGACCAGAAAACTTGTAATTAGCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTCCAGTTCTTTCCTGGATACGGCGGCGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGCGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGTGGCGGCGGAGGGTTTGGCGGTGTTGGTGACGGTGGCGCTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTTCCTTGA

Protein sequence

MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGLP
Homology
BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_011648421.1 (glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothetical protein Csa_013856 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 111/121 (91.74%), Postives = 113/121 (93.39%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGS AFK LWLVVLCALIW SE RKLVI+NGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_038895952.1 (glycine-rich cell wall structural protein-like [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 7.4e-32
Identity = 111/123 (90.24%), Postives = 115/123 (93.50%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLAFK LWLVVLCALIW SE RKLVI+NGGEIESEKT+AFQFFPG+GGGLGGGGG+GG
Sbjct: 1   MGSLAFKFLWLVVLCALIWASEPRKLVITNGGEIESEKTLAFQFFPGFGGGLGGGGGYGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGA--LGGGAGGGAGGGFGG 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG   LGGGAGGGAGGGFGG
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGGGILGGGAGGGAGGGFGG 120

Query: 121 GLP 122
           GLP
Sbjct: 121 GLP 123

BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_008446362.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0056845.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa] >TYJ99348.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.8e-31
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_022140151.1 (glycine-rich protein 5-like [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0

Query: 3   SLAFKILWLVVLCALIWTSETRKLVISNGGEI----ESEKTVAFQFFPGYGGGLGGGGGF 62
           +LA K+LWLV+L ALI  SE RK ++ NGG+I    E+EKT+ FQFFPG+GGGLGGGGGF
Sbjct: 5   ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGF 64

Query: 63  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGG 122
           GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGG+GGGFGG
Sbjct: 65  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGG 124

BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_022994117.1 (glycine-rich protein 5 [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19
Identity = 99/124 (79.84%), Postives = 102/124 (82.26%), Query Frame = 0

Query: 1   MGS-LAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFG 60
           MGS LA K LWL+VL ALI  SE R+LV   GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGSFLALKFLWLLVLFALICASEPRRLV-GTGGGFGSEKTGYFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGA--LGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGG G  G+  LGGGAGGGAGGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120

Query: 121 GGLP 122
           GGLP
Sbjct: 121 GGLP 123

BLAST of Cla97C03G055780 vs. ExPASy TrEMBL
Match: A0A0A0LS00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 111/121 (91.74%), Postives = 113/121 (93.39%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGS AFK LWLVVLCALIW SE RKLVI+NGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Cla97C03G055780 vs. ExPASy TrEMBL
Match: A0A5D3BMG3 (Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005650 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Cla97C03G055780 vs. ExPASy TrEMBL
Match: E5GC63 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Cla97C03G055780 vs. ExPASy TrEMBL
Match: A0A1S3BEW4 (glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC103489125 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Cla97C03G055780 vs. ExPASy TrEMBL
Match: A0A6J1CF04 (glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.8e-23
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0

Query: 3   SLAFKILWLVVLCALIWTSETRKLVISNGGEI----ESEKTVAFQFFPGYGGGLGGGGGF 62
           +LA K+LWLV+L ALI  SE RK ++ NGG+I    E+EKT+ FQFFPG+GGGLGGGGGF
Sbjct: 5   ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGF 64

Query: 63  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGG 122
           GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGG G GG LGGGAGGG+GGGFGG
Sbjct: 65  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGG 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011648421.11.1e-3291.74glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothet... [more]
XP_038895952.17.4e-3290.24glycine-rich cell wall structural protein-like [Benincasa hispida][more]
XP_008446362.14.8e-3190.08PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 ... [more]
XP_022140151.11.8e-2279.67glycine-rich protein 5-like [Momordica charantia][more]
XP_022994117.11.4e-1979.84glycine-rich protein 5 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS005.5e-3391.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1[more]
A0A5D3BMG32.3e-3190.08Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695... [more]
E5GC632.3e-3190.08Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A1S3BEW42.3e-3190.08glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC10348912... [more]
A0A6J1CF048.8e-2379.67glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G055780.1Cla97C03G055780.1mRNA