Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCACCACATCCATTTCTCTATCTCTACCCATTTTCCTCTCCTCTTCCAACCTTCTTCCTACTCTCCGCCCTTCCTCATCCACCGCTCTCTCTCGCCGACGAACACTTCTCATTCCGAATCCTCTCCAACAAAATCGTCAAAAAGGAATCTCAATTTGGAGGCTCCATGCCACATCTGAAGAAACTTTCGCCTCCGATTCCGCCGGACTGGTGGAGAAATCGCAGGAGATAGTATCCACCACTGACGACGGCGTTTCCACAATAATCTCCGTCCTTCTCTTCGTCGCGTTCATCGGTCTATCTATTCTCACAATCGGGGTAAAATCATTTCAATCGAATAACTGTTGAGTTTCATCTGTTTGGTTAGGGTTTTTACATATCGGTTGTTGTGTATTTCTGGTTTCAGGTGATCTACATTGCCCTGACGGATTTCTTGCAGAAGAGAGAGAAGGAAAAGTTTGAGAAAGAGGAAGCGGGGAAGAAGAAGAGTGGGAAAAAGAAGAAGGTGAAAGCTAAAGGCGGACCGAAAGGATTCGGGCAGAAGATTGAAGAAGAAGAAGAAGAAGATTGA
mRNA sequence
ATGGCCTCCACCACATCCATTTCTCTATCTCTACCCATTTTCCTCTCCTCTTCCAACCTTCTTCCTACTCTCCGCCCTTCCTCATCCACCGCTCTCTCTCGCCGACGAACACTTCTCATTCCGAATCCTCTCCAACAAAATCGTCAAAAAGGAATCTCAATTTGGAGGCTCCATGCCACATCTGAAGAAACTTTCGCCTCCGATTCCGCCGGACTGGTGGAGAAATCGCAGGAGATAGTATCCACCACTGACGACGGCGTTTCCACAATAATCTCCGTCCTTCTCTTCGTCGCGTTCATCGGTCTATCTATTCTCACAATCGGGGTGATCTACATTGCCCTGACGGATTTCTTGCAGAAGAGAGAGAAGGAAAAGTTTGAGAAAGAGGAAGCGGGGAAGAAGAAGAGTGGGAAAAAGAAGAAGGTGAAAGCTAAAGGCGGACCGAAAGGATTCGGGCAGAAGATTGAAGAAGAAGAAGAAGAAGATTGA
Coding sequence (CDS)
ATGGCCTCCACCACATCCATTTCTCTATCTCTACCCATTTTCCTCTCCTCTTCCAACCTTCTTCCTACTCTCCGCCCTTCCTCATCCACCGCTCTCTCTCGCCGACGAACACTTCTCATTCCGAATCCTCTCCAACAAAATCGTCAAAAAGGAATCTCAATTTGGAGGCTCCATGCCACATCTGAAGAAACTTTCGCCTCCGATTCCGCCGGACTGGTGGAGAAATCGCAGGAGATAGTATCCACCACTGACGACGGCGTTTCCACAATAATCTCCGTCCTTCTCTTCGTCGCGTTCATCGGTCTATCTATTCTCACAATCGGGGTGATCTACATTGCCCTGACGGATTTCTTGCAGAAGAGAGAGAAGGAAAAGTTTGAGAAAGAGGAAGCGGGGAAGAAGAAGAGTGGGAAAAAGAAGAAGGTGAAAGCTAAAGGCGGACCGAAAGGATTCGGGCAGAAGATTGAAGAAGAAGAAGAAGAAGATTGA
Protein sequence
MASTTSISLSLPIFLSSSNLLPTLRPSSSTALSRRRTLLIPNPLQQNRQKGISIWRLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIYIALTDFLQKREKEKFEKEEAGKKKSGKKKKVKAKGGPKGFGQKIEEEEEED
Homology
BLAST of Cla97C02G045960 vs. NCBI nr
Match:
XP_038901778.1 (uncharacterized protein LOC120088501 [Benincasa hispida])
HSP 1 Score: 230.7 bits (587), Expect = 8.9e-57
Identity = 144/172 (83.72%), Postives = 149/172 (86.63%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSN-----LLPTLRPS------SSTALSRRRTLLIPNPLQQNRQ 60
MAST S LSLPIFLSS N LLPTLR S SST SRRRTLLIPNPL QNRQ
Sbjct: 1 MASTASTFLSLPIFLSSPNPNSSKLLPTLRCSSSPTFLSSTTPSRRRTLLIPNPLHQNRQ 60
Query: 61 KGISIWRLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGV 120
K ISI RLHATSE+T ASDSA LVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGV
Sbjct: 61 KAISIRRLHATSEDTLASDSAALVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGV 120
Query: 121 IYIALTDFLQKREKEKFEKEEAGKKKSGKKKKVKAKGGPKGFGQKIEEEEEE 162
IYIA+TDFLQKREKEKFEKEEAGKKKSGKKKKVKAKGGP+GFGQK+EEEEE+
Sbjct: 121 IYIAVTDFLQKREKEKFEKEEAGKKKSGKKKKVKAKGGPRGFGQKVEEEEED 172
BLAST of Cla97C02G045960 vs. NCBI nr
Match:
XP_008464105.1 (PREDICTED: uncharacterized protein LOC103502067 [Cucumis melo] >KAA0061879.1 uncharacterized protein E6C27_scaffold89G001250 [Cucumis melo var. makuwa])
HSP 1 Score: 199.1 bits (505), Expect = 2.9e-47
Identity = 132/172 (76.74%), Postives = 147/172 (85.47%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLPTLRPS------SSTALSRRRTLLIPNPLQQNRQKGISI 60
MASTTSISLSLPI LSSSNLLPTLR S SSTALS R TL + NPL+QNRQK +S
Sbjct: 1 MASTTSISLSLPISLSSSNLLPTLRSSSSPPFPSSTALSCRPTLPLLNPLRQNRQKQLSF 60
Query: 61 WRLH-ATSEETFASDSAGLV-EKSQEIV-STTDDGVSTIISVLLFVAFIGLSILTIGVIY 120
+H ATSE+T ASDSA LV EKSQ+IV ST DDGVSTIISVLLF+AFIGLSILTIGVIY
Sbjct: 61 SSIHAATSEQTLASDSAALVAEKSQDIVGSTNDDGVSTIISVLLFIAFIGLSILTIGVIY 120
Query: 121 IALTDFLQKREKEKFEKEEAG-KKKSGKKKKVKAKGGPKGFGQKIEEEEEED 163
I +TDFLQKREKEKFEKEEAG KKKSGKKKKV+A+ GP+GFGQK+EEEE+++
Sbjct: 121 IGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARDGPRGFGQKVEEEEDDE 172
BLAST of Cla97C02G045960 vs. NCBI nr
Match:
XP_022148488.1 (uncharacterized protein LOC111017113 [Momordica charantia])
HSP 1 Score: 184.9 bits (468), Expect = 5.6e-43
Identity = 121/166 (72.89%), Postives = 135/166 (81.33%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLP----TLRPSSS-TALSRRRTLLIPNPLQQNRQKGISIW 60
MA+T S SLSLPIFLS+ N P LR SS+ LSRR LL+ NPL+QN +G SI
Sbjct: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR 60
Query: 61 RLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIYIALT 120
RLHATSE+T AS+SA LVEKSQEI S+ DDGVSTIIS LLFVAFIGLSILTIGVIYIA+T
Sbjct: 61 RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT 120
Query: 121 DFLQKREKEKFEKEEAGK-KKSGKKKKVKAKGGPKGFGQKIEEEEE 161
DFLQKREKEKFEK E K KKSGKKKKV+A+ GP+GFGQKIEEEE+
Sbjct: 121 DFLQKREKEKFEKVETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ 166
BLAST of Cla97C02G045960 vs. NCBI nr
Match:
XP_022947295.1 (uncharacterized protein LOC111451198 [Cucurbita moschata])
HSP 1 Score: 183.0 bits (463), Expect = 2.1e-42
Identity = 124/171 (72.51%), Postives = 136/171 (79.53%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSN----LLPTLRPS-----SSTALSRRRTLLIPNPLQQNRQKG 60
MA+TTS SLSLPIFLSSSN LP+LR S SS LSRR L+ L QNR +
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSLRSSSASFASSFNLSRRPAALV---LIQNRPRR 60
Query: 61 ISIWRLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIY 120
SI RLHA SEET AS+SA LVEKSQEI ST DDGVSTIISVLLFVAF+GLS+LTIGVIY
Sbjct: 61 GSIRRLHAVSEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIY 120
Query: 121 IALTDFLQKREKEKFEKEEAGKKKSGKKK--KVKAKGGPKGFGQKIEEEEE 161
IA+TDFLQKREKEKFEKEEA KKSGKKK KVKAK GP+GFGQK+E+EE+
Sbjct: 121 IAVTDFLQKREKEKFEKEEAANKKSGKKKKVKVKAKAGPRGFGQKVEQEED 168
BLAST of Cla97C02G045960 vs. NCBI nr
Match:
XP_023532311.1 (uncharacterized protein LOC111794502 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 182.6 bits (462), Expect = 2.8e-42
Identity = 124/171 (72.51%), Postives = 136/171 (79.53%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSN----LLPTLRPS-----SSTALSRRRTLLIPNPLQQNRQKG 60
MA+TTS SLSLPIFLSSSN LP+LR S SS LSRR L+ L QNR +
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSLRSSSASFASSLNLSRRPVALV---LIQNRSRR 60
Query: 61 ISIWRLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIY 120
SI RLHA SEET AS+SA LVEKSQEI ST DDGVSTIISVLLFVAFIGLS+LTIGVIY
Sbjct: 61 GSIRRLHAISEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFIGLSVLTIGVIY 120
Query: 121 IALTDFLQKREKEKFEKEEAGKKKSGKKK--KVKAKGGPKGFGQKIEEEEE 161
IA+TDFLQKREKEKFEKEEA KKSGKKK KVKA+ GP+GFGQK+E+EE+
Sbjct: 121 IAVTDFLQKREKEKFEKEEAANKKSGKKKRVKVKARAGPRGFGQKVEQEED 168
BLAST of Cla97C02G045960 vs. ExPASy TrEMBL
Match:
A0A5A7V864 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001250 PE=4 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 132/172 (76.74%), Postives = 147/172 (85.47%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLPTLRPS------SSTALSRRRTLLIPNPLQQNRQKGISI 60
MASTTSISLSLPI LSSSNLLPTLR S SSTALS R TL + NPL+QNRQK +S
Sbjct: 1 MASTTSISLSLPISLSSSNLLPTLRSSSSPPFPSSTALSCRPTLPLLNPLRQNRQKQLSF 60
Query: 61 WRLH-ATSEETFASDSAGLV-EKSQEIV-STTDDGVSTIISVLLFVAFIGLSILTIGVIY 120
+H ATSE+T ASDSA LV EKSQ+IV ST DDGVSTIISVLLF+AFIGLSILTIGVIY
Sbjct: 61 SSIHAATSEQTLASDSAALVAEKSQDIVGSTNDDGVSTIISVLLFIAFIGLSILTIGVIY 120
Query: 121 IALTDFLQKREKEKFEKEEAG-KKKSGKKKKVKAKGGPKGFGQKIEEEEEED 163
I +TDFLQKREKEKFEKEEAG KKKSGKKKKV+A+ GP+GFGQK+EEEE+++
Sbjct: 121 IGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARDGPRGFGQKVEEEEDDE 172
BLAST of Cla97C02G045960 vs. ExPASy TrEMBL
Match:
A0A1S3CM77 (uncharacterized protein LOC103502067 OS=Cucumis melo OX=3656 GN=LOC103502067 PE=4 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 132/172 (76.74%), Postives = 147/172 (85.47%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLPTLRPS------SSTALSRRRTLLIPNPLQQNRQKGISI 60
MASTTSISLSLPI LSSSNLLPTLR S SSTALS R TL + NPL+QNRQK +S
Sbjct: 1 MASTTSISLSLPISLSSSNLLPTLRSSSSPPFPSSTALSCRPTLPLLNPLRQNRQKQLSF 60
Query: 61 WRLH-ATSEETFASDSAGLV-EKSQEIV-STTDDGVSTIISVLLFVAFIGLSILTIGVIY 120
+H ATSE+T ASDSA LV EKSQ+IV ST DDGVSTIISVLLF+AFIGLSILTIGVIY
Sbjct: 61 SSIHAATSEQTLASDSAALVAEKSQDIVGSTNDDGVSTIISVLLFIAFIGLSILTIGVIY 120
Query: 121 IALTDFLQKREKEKFEKEEAG-KKKSGKKKKVKAKGGPKGFGQKIEEEEEED 163
I +TDFLQKREKEKFEKEEAG KKKSGKKKKV+A+ GP+GFGQK+EEEE+++
Sbjct: 121 IGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARDGPRGFGQKVEEEEDDE 172
BLAST of Cla97C02G045960 vs. ExPASy TrEMBL
Match:
A0A0A0KFD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190230 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 2.4e-47
Identity = 133/173 (76.88%), Postives = 145/173 (83.82%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLPTLRPSS------STALSRRRTLLIPNPLQQNRQKGISI 60
MASTT ISLSLPI LSSSNLLPTLR SS STAL R TL + NPL+QNRQK +SI
Sbjct: 1 MASTTFISLSLPISLSSSNLLPTLRSSSSPPFPFSTALFSRPTLPLLNPLRQNRQKQLSI 60
Query: 61 WRLH-ATSEETFASDSAGLV--EKSQEIV-STTDDGVSTIISVLLFVAFIGLSILTIGVI 120
R+H ATS++T SDSA L+ EKSQEIV ST DDGVSTIISVLLF AFIGLSILTIGVI
Sbjct: 61 SRIHAATSQQTLPSDSAALLAAEKSQEIVGSTNDDGVSTIISVLLFTAFIGLSILTIGVI 120
Query: 121 YIALTDFLQKREKEKFEKEEAG-KKKSGKKKKVKAKGGPKGFGQKIEEEEEED 163
YI +TDFLQKREKEKFEKEEAG KKKSGKKKKV+A+GGP+GFGQK+E EEEED
Sbjct: 121 YIGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARGGPRGFGQKVEGEEEED 173
BLAST of Cla97C02G045960 vs. ExPASy TrEMBL
Match:
A0A6J1D484 (uncharacterized protein LOC111017113 OS=Momordica charantia OX=3673 GN=LOC111017113 PE=4 SV=1)
HSP 1 Score: 184.9 bits (468), Expect = 2.7e-43
Identity = 121/166 (72.89%), Postives = 135/166 (81.33%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLP----TLRPSSS-TALSRRRTLLIPNPLQQNRQKGISIW 60
MA+T S SLSLPIFLS+ N P LR SS+ LSRR LL+ NPL+QN +G SI
Sbjct: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR 60
Query: 61 RLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIYIALT 120
RLHATSE+T AS+SA LVEKSQEI S+ DDGVSTIIS LLFVAFIGLSILTIGVIYIA+T
Sbjct: 61 RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT 120
Query: 121 DFLQKREKEKFEKEEAGK-KKSGKKKKVKAKGGPKGFGQKIEEEEE 161
DFLQKREKEKFEK E K KKSGKKKKV+A+ GP+GFGQKIEEEE+
Sbjct: 121 DFLQKREKEKFEKVETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ 166
BLAST of Cla97C02G045960 vs. ExPASy TrEMBL
Match:
A0A6J1G6G9 (uncharacterized protein LOC111451198 OS=Cucurbita moschata OX=3662 GN=LOC111451198 PE=4 SV=1)
HSP 1 Score: 183.0 bits (463), Expect = 1.0e-42
Identity = 124/171 (72.51%), Postives = 136/171 (79.53%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSN----LLPTLRPS-----SSTALSRRRTLLIPNPLQQNRQKG 60
MA+TTS SLSLPIFLSSSN LP+LR S SS LSRR L+ L QNR +
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSLRSSSASFASSFNLSRRPAALV---LIQNRPRR 60
Query: 61 ISIWRLHATSEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIY 120
SI RLHA SEET AS+SA LVEKSQEI ST DDGVSTIISVLLFVAF+GLS+LTIGVIY
Sbjct: 61 GSIRRLHAVSEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIY 120
Query: 121 IALTDFLQKREKEKFEKEEAGKKKSGKKK--KVKAKGGPKGFGQKIEEEEE 161
IA+TDFLQKREKEKFEKEEA KKSGKKK KVKAK GP+GFGQK+E+EE+
Sbjct: 121 IAVTDFLQKREKEKFEKEEAANKKSGKKKKVKVKAKAGPRGFGQKVEQEED 168
BLAST of Cla97C02G045960 vs. TAIR 10
Match:
AT2G29180.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )
HSP 1 Score: 92.4 bits (228), Expect = 3.5e-19
Identity = 72/165 (43.64%), Postives = 103/165 (62.42%), Query Frame = 0
Query: 1 MASTTSISLSLPIFLSSSNLLPTLRPSSSTALSRRRTLLIPNPLQQNRQKGISIWRLHAT 60
M++TT+ SLSL F S + S R ++ + + Q+ +WR+ AT
Sbjct: 1 MSATTTPSLSLSNFRPRFQTPVKGHHISPLSWSVSRRKILSFRVLRLHQEKTQLWRVSAT 60
Query: 61 ----SEETFASDSAGLVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGVIYIALTD 120
S+E +SDS+ + S DGV+ II VLLFVAF+ L++LTIGV+YI +T+
Sbjct: 61 PEEISQEIVSSDSSS--SSGAVVSSGGQDGVALIIQVLLFVAFLALTVLTIGVVYIGVTE 120
Query: 121 FLQKREKEKFEKEEAGK--KKSGKKKKVKAKGGPKGFGQKIEEEE 160
FL KRE+EKFEK+EA K KK GKKK ++A+ GP+GFGQKIE+++
Sbjct: 121 FLGKREREKFEKDEAAKKSKKGGKKKAMRARAGPRGFGQKIEDDD 163
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038901778.1 | 8.9e-57 | 83.72 | uncharacterized protein LOC120088501 [Benincasa hispida] | [more] |
XP_008464105.1 | 2.9e-47 | 76.74 | PREDICTED: uncharacterized protein LOC103502067 [Cucumis melo] >KAA0061879.1 unc... | [more] |
XP_022148488.1 | 5.6e-43 | 72.89 | uncharacterized protein LOC111017113 [Momordica charantia] | [more] |
XP_022947295.1 | 2.1e-42 | 72.51 | uncharacterized protein LOC111451198 [Cucurbita moschata] | [more] |
XP_023532311.1 | 2.8e-42 | 72.51 | uncharacterized protein LOC111794502 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V864 | 1.4e-47 | 76.74 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A1S3CM77 | 1.4e-47 | 76.74 | uncharacterized protein LOC103502067 OS=Cucumis melo OX=3656 GN=LOC103502067 PE=... | [more] |
A0A0A0KFD7 | 2.4e-47 | 76.88 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190230 PE=4 SV=1 | [more] |
A0A6J1D484 | 2.7e-43 | 72.89 | uncharacterized protein LOC111017113 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A6J1G6G9 | 1.0e-42 | 72.51 | uncharacterized protein LOC111451198 OS=Cucurbita moschata OX=3662 GN=LOC1114511... | [more] |
Match Name | E-value | Identity | Description | |
AT2G29180.1 | 3.5e-19 | 43.64 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |