Cla97C02G036985 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G036985
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Photosystem II reaction center protein L
Location	Cla97Chr02: 22967222 .. 22967624 (+)
RNA-Seq Expression	Cla97C02G036985
Synteny	Cla97C02G036985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCATTATTTTTTTTCCTTGATTTTCTTTCCCAATTTGCAATGAAAATTTTTCCCAATTTCATATACCTTTTGGCAATCTCAAAACTAAAAATATAATCTCTTTAAAAAAAATTCAACAAAAATGAAGCTATCATGATTTTTTTTTCGATAAAACTTATCCTATTTTTACAGTGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

mRNA sequence

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Coding sequence (CDS)

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Protein sequence

MWGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Homology

[Close]

BLAST of Cla97C02G036985 vs. NCBI nr
Match: YP_009387574.1 (photosystem II protein L [Hansenia weberbaueriana] >YP_009387659.1 photosystem II protein L [Hansenia forbesii] >YP_009387829.1 photosystem II protein L [Hansenia forrestii] >YP_010116922.1 photosystem II protein L [Haplosphaera himalayensis] >QHS71219.1 photosystem II protein L [Haplosphaera phaea] >QPG23974.1 photosystem II protein L [Hansenia oviformis] >ART32526.1 photosystem II protein L [Hansenia weberbaueriana] >ART32611.1 photosystem II protein L [Hansenia forbesii] >ART32781.1 photosystem II protein L [Hansenia forrestii])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. NCBI nr
Match: QKD76372.1 (photosystem II protein L [Santalum album] >BBZ90126.1 photosystem II protein L [Santalum boninense])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQCNSSNDKPNPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCNSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. NCBI nr
Match: YP_009920018.1 (photosystem II protein L [Cinnamomum longipetiolatum] >QMQ98907.1 photosystem II protein L [Cinnamomum longipetiolatum])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 5  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 62

[Close]

BLAST of Cla97C02G036985 vs. NCBI nr
Match: YP_009860414.1 (photosystem II protein L [Litsea cubeba] >YP_009919936.1 photosystem II protein L [Cinnamomum kotoense] >YP_009920186.1 photosystem II protein L [Litsea garrettii] >QMQ98738.1 photosystem II protein L [Cinnamomum aromaticum] >QKV10051.1 photosystem II protein L [Litsea cubeba] >QMQ98822.1 photosystem II protein L [Cinnamomum kotoense] >QMQ99071.1 photosystem II protein L [Litsea garrettii])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. NCBI nr
Match: WP_222273419.1 (hypothetical protein, partial [Modestobacter marinus])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 5  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 62

[Close]

BLAST of Cla97C02G036985 vs. ExPASy Swiss-Prot
Match: Q7J1C4 (Photosystem II reaction center protein L OS=Acorus calamus OX=4465 GN=psbL PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of Cla97C02G036985 vs. ExPASy Swiss-Prot
Match: Q6EYW2 (Photosystem II reaction center protein L OS=Agathis robusta OX=60854 GN=psbL PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of Cla97C02G036985 vs. ExPASy Swiss-Prot
Match: A1EA23 (Photosystem II reaction center protein L OS=Agrostis stolonifera OX=63632 GN=psbL PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of Cla97C02G036985 vs. ExPASy Swiss-Prot
Match: Q67HN6 (Photosystem II reaction center protein L OS=Ananas comosus OX=4615 GN=psbL PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of Cla97C02G036985 vs. ExPASy Swiss-Prot
Match: A4QK33 (Photosystem II reaction center protein L OS=Arabis hirsuta OX=78191 GN=psbL PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of Cla97C02G036985 vs. ExPASy TrEMBL
Match: A0A1Y0B5C9 (Photosystem II reaction center protein L OS=Hansenia forbesii OX=165499 GN=psbL PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. ExPASy TrEMBL
Match: A0A1Y0B539 (Photosystem II reaction center protein L OS=Hansenia weberbaueriana OX=54724 GN=psbL PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. ExPASy TrEMBL
Match: A0A1Y0B5U7 (Photosystem II reaction center protein L OS=Hansenia forrestii OX=1050841 GN=psbL PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. ExPASy TrEMBL
Match: A0A6C0AB03 (Photosystem II reaction center protein L OS=Haplosphaera phaea OX=239646 GN=psbL PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. ExPASy TrEMBL
Match: A0A7S9HVQ3 (Photosystem II protein L OS=Hansenia oviformis OX=1978917 GN=psbL PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of Cla97C02G036985 vs. TAIR 10
Match: ATCG00560.1 (photosystem II reaction center protein L )

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPNEQ+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:

BLAST of Cla97C02G036985 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009387574.1	1.8e-23	98.28	photosystem II protein L [Hansenia weberbaueriana] >YP_009387659.1 photosystem I...	[more]
QKD76372.1	2.3e-23	98.28	photosystem II protein L [Santalum album] >BBZ90126.1 photosystem II protein L [...	[more]
YP_009920018.1	8.9e-23	96.55	photosystem II protein L [Cinnamomum longipetiolatum] >QMQ98907.1 photosystem II...	[more]
YP_009860414.1	8.9e-23	96.55	photosystem II protein L [Litsea cubeba] >YP_009919936.1 photosystem II protein ...	[more]
WP_222273419.1	8.9e-23	96.55	hypothetical protein, partial [Modestobacter marinus]	[more]

BLAST of Cla97C02G036985 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7J1C4	7.8e-14	100.00	Photosystem II reaction center protein L OS=Acorus calamus OX=4465 GN=psbL PE=2 ...	[more]
Q6EYW2	7.8e-14	100.00	Photosystem II reaction center protein L OS=Agathis robusta OX=60854 GN=psbL PE=...	[more]
A1EA23	7.8e-14	100.00	Photosystem II reaction center protein L OS=Agrostis stolonifera OX=63632 GN=psb...	[more]
Q67HN6	7.8e-14	100.00	Photosystem II reaction center protein L OS=Ananas comosus OX=4615 GN=psbL PE=3 ...	[more]
A4QK33	7.8e-14	100.00	Photosystem II reaction center protein L OS=Arabis hirsuta OX=78191 GN=psbL PE=3...	[more]

BLAST of Cla97C02G036985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Y0B5C9	8.7e-24	98.28	Photosystem II reaction center protein L OS=Hansenia forbesii OX=165499 GN=psbL ...	[more]
A0A1Y0B539	8.7e-24	98.28	Photosystem II reaction center protein L OS=Hansenia weberbaueriana OX=54724 GN=...	[more]
A0A1Y0B5U7	8.7e-24	98.28	Photosystem II reaction center protein L OS=Hansenia forrestii OX=1050841 GN=psb...	[more]
A0A6C0AB03	8.7e-24	98.28	Photosystem II reaction center protein L OS=Haplosphaera phaea OX=239646 GN=psbL...	[more]
A0A7S9HVQ3	8.7e-24	98.28	Photosystem II protein L OS=Hansenia oviformis OX=1978917 GN=psbL PE=4 SV=1	[more]

BLAST of Cla97C02G036985 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00560.1	2.1e-14	97.37	photosystem II reaction center protein L	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003372	Photosystem II PsbL	PFAM	PF02419	PsbL	coord: 24..59 e-value: 3.5E-23 score: 81.3
IPR003372	Photosystem II PsbL	HAMAP	MF_01317	PSII_PsbL	coord: 14..59 score: 16.195366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
IPR037266	Photosystem II PsbL superfamily	SUPERFAMILY	161017	Photosystem II reaction center protein L, PsbL	coord: 23..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G036985.1	Cla97C02G036985.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding