Cla97C02G031940 (gene) Watermelon (97103) v2.5

Overview
NameCla97C02G031940
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr02: 4977058 .. 4977384 (+)
RNA-Seq ExpressionCla97C02G031940
SyntenyCla97C02G031940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATCTTCAAAAAAAACATGTTGATTGTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATTGGAGCTCCTCAAGGAGGTGTGGAGGTTGTATGTAGCCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATTATCAACATAACATCAATGGTGATGGATTGGAACATATGGCTCCTCAAAGCCCAAAAGAAATCAAAGGAGACATAAATATTGTTACTCATCTACCATATATGAATTAA

mRNA sequence

ATGTGTATCTTCAAAAAAAACATGTTGATTGTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATTGGAGCTCCTCAAGGAGGTGTGGAGGTTGTATGTAGCCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATTATCAACATAACATCAATGGTGATGGATTGGAACATATGGCTCCTCAAAGCCCAAAAGAAATCAAAGGAGACATAAATATTGTTACTCATCTACCATATATGAATTAA

Coding sequence (CDS)

ATGTGTATCTTCAAAAAAAACATGTTGATTGTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATTGGAGCTCCTCAAGGAGGTGTGGAGGTTGTATGTAGCCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATTATCAACATAACATCAATGGTGATGGATTGGAACATATGGCTCCTCAAAGCCCAAAAGAAATCAAAGGAGACATAAATATTGTTACTCATCTACCATATATGAATTAA

Protein sequence

MCIFKKNMLIVVGVLVISTNLIEITKAIRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQSPKEIKGDINIVTHLPYMN
Homology
BLAST of Cla97C02G031940 vs. NCBI nr
Match: KAA0036627.1 (hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK03365.1 hypothetical protein E5676_scaffold2392G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.2e-18
Identity = 63/118 (53.39%), Postives = 76/118 (64.41%), Query Frame = 0

Query: 8   MLIVVGVLVISTNLIEITKA---IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFND 67
           M+++VGVL+IST LIEITKA   I + GAPQ GVE+VCSPEDPRV+ L+YAN ESSEFN 
Sbjct: 1   MVVLVGVLLISTTLIEITKATSRIVNYGAPQ-GVEIVCSPEDPRVFKLHYANDESSEFNA 60

Query: 68  VDGCRPQKDYQHNINGDGLE---------------HMAPQSPKEIKGDINIVTHLPYM 108
           VD C   K    N+N  G                 ++APQS +E KG  N+VT LPYM
Sbjct: 61  VDDC---KTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQETKGVKNVVTPLPYM 114

BLAST of Cla97C02G031940 vs. NCBI nr
Match: KAE8646139.1 (hypothetical protein Csa_016560, partial [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1   MCIFKKNMLIVVGVLVISTNLIEITKA----IRSIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNML+ VGVL+IST LIEITKA     R  G    GVE+VCSPEDPRV+ L+YAN
Sbjct: 25  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 84

Query: 61  QESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQS 91
            ESSE+N VD C+  K  + N NG    +MAPQS
Sbjct: 85  DESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQS 116

BLAST of Cla97C02G031940 vs. ExPASy TrEMBL
Match: A0A5D3BWB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00270 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.5e-18
Identity = 63/118 (53.39%), Postives = 76/118 (64.41%), Query Frame = 0

Query: 8   MLIVVGVLVISTNLIEITKA---IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFND 67
           M+++VGVL+IST LIEITKA   I + GAPQ GVE+VCSPEDPRV+ L+YAN ESSEFN 
Sbjct: 1   MVVLVGVLLISTTLIEITKATSRIVNYGAPQ-GVEIVCSPEDPRVFKLHYANDESSEFNA 60

Query: 68  VDGCRPQKDYQHNINGDGLE---------------HMAPQSPKEIKGDINIVTHLPYM 108
           VD C   K    N+N  G                 ++APQS +E KG  N+VT LPYM
Sbjct: 61  VDDC---KTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQETKGVKNVVTPLPYM 114

BLAST of Cla97C02G031940 vs. ExPASy TrEMBL
Match: A0A0A0K7P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.1e-16
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1  MCIFKKNMLIVVGVLVISTNLIEITKA----IRSIGAPQGGVEVVCSPEDPRVYNLNYAN 60
          M I KKNML+ VGVL+IST LIEITKA     R  G    GVE+VCSPEDPRV+ L+YAN
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 60

Query: 61 QESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQS 91
           ESSE+N VD C+  K  + N NG    +MAPQS
Sbjct: 61 DESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQS 92

BLAST of Cla97C02G031940 vs. ExPASy TrEMBL
Match: A0A0A0K4C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0

Query: 1  MCIFKKNMLIVVGVLVISTNLIEITKAI---RSIGAPQGGVEVVCSPEDPRVYNLNYANQ 60
          M I KKNM + VG+L+IST LIEITKA     + GAPQ GVE+VCSPEDPRV+ L+YAN 
Sbjct: 1  MDITKKNMFVFVGLLLISTTLIEITKATTRSMNYGAPQ-GVEIVCSPEDPRVFRLHYAND 60

Query: 61 ESSEFNDVDGCRPQKDYQHNINGDGLEHMAP-QSPKE 94
          ESSE+N VD C   K    N+N DG     P QSP +
Sbjct: 61 ESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQ 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036627.19.2e-1853.39hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK033... [more]
KAE8646139.11.5e-1559.57hypothetical protein Csa_016560, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BWB14.5e-1853.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K7P87.1e-1659.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1[more]
A0A0A0K4C82.1e-1557.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G031940.1Cla97C02G031940.1mRNA