Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA
mRNA sequence
ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA
Coding sequence (CDS)
ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA
Protein sequence
MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTSTN
Homology
BLAST of Cla97C01G011968 vs. NCBI nr
Match:
XP_038882325.1 (uncharacterized protein LOC120073574 [Benincasa hispida])
HSP 1 Score: 248.4 bits (633), Expect = 4.3e-62
Identity = 120/160 (75.00%), Postives = 140/160 (87.50%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD K RALEFQ+GDKVLIKLRP+QFRFRGQ+ QR+VRKYEGPV+VIEKVG+ SYRV
Sbjct: 41 MKKWADKKWRALEFQAGDKVLIKLRPEQFRFRGQKDQRLVRKYEGPVEVIEKVGRTSYRV 100
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
QLPSWMKIHPVIHVS LKPYHPDP DE+RN++ RPPVTMK+ EK + +IL +TRR+GR
Sbjct: 101 QLPSWMKIHPVIHVSILKPYHPDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRTRRIGR 160
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ 161
PRR+L EFLVKW+DL +EEISWERA+D ++A IA FEQ
Sbjct: 161 PRRELTEFLVKWKDLPDEEISWERAKDSKNAAPAIANFEQ 200
BLAST of Cla97C01G011968 vs. NCBI nr
Match:
XP_038885809.1 (uncharacterized protein LOC120076104 [Benincasa hispida])
HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 108/141 (76.60%), Postives = 125/141 (88.65%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRRALEFQ+GDKVLIKLRP++FRFRGQR QR+VRKYEGPV+VIEKVG+ SYRV
Sbjct: 33 MKKWADKKRRALEFQAGDKVLIKLRPEKFRFRGQRDQRLVRKYEGPVEVIEKVGRTSYRV 92
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
QLPSWMKIHPVIHVS LKPYH DP DE+RN++ RPPVTMK+ EK + +IL + RR+GR
Sbjct: 93 QLPSWMKIHPVIHVSILKPYHSDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRARRIGR 152
Query: 121 PRRDLKEFLVKWRDLLEEEIS 142
PRR+L EFLVKW+DL +EEIS
Sbjct: 153 PRRELTEFLVKWKDLPDEEIS 173
BLAST of Cla97C01G011968 vs. NCBI nr
Match:
KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 214.5 bits (545), Expect = 6.9e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 1415 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1474
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 1475 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1534
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 1535 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1582
BLAST of Cla97C01G011968 vs. NCBI nr
Match:
TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 214.5 bits (545), Expect = 6.9e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 91 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 150
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 151 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 210
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 211 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 258
BLAST of Cla97C01G011968 vs. NCBI nr
Match:
KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 214.5 bits (545), Expect = 6.9e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586
BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match:
A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586
BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match:
A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 91 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 150
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 151 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 210
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 211 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 258
BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match:
A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586
BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match:
A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPMEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586
BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match:
A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0
Query: 1 MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478
Query: 61 QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
LP+WMKI+PVIHVSNLKPYH D D +RNVVTRP + + +K ++EILA + RR R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538
Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
P R + E+LVKW++L EE SWER EDL++ +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038882325.1 | 4.3e-62 | 75.00 | uncharacterized protein LOC120073574 [Benincasa hispida] | [more] |
XP_038885809.1 | 3.9e-55 | 76.60 | uncharacterized protein LOC120076104 [Benincasa hispida] | [more] |
KAA0067557.1 | 6.9e-52 | 62.50 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
TYK19637.1 | 6.9e-52 | 62.50 | reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta... | [more] |
KAA0037220.1 | 6.9e-52 | 62.50 | reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C4R1 | 3.3e-52 | 62.50 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5D3DBE0 | 3.3e-52 | 62.50 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24... | [more] |
A0A5A7UXR6 | 3.3e-52 | 62.50 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22... | [more] |
A0A5A7T0E2 | 3.3e-52 | 62.50 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5D3BYE6 | 3.3e-52 | 62.50 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
Match Name | E-value | Identity | Description | |