Cla97C01G011968 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G011968
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionReverse transcriptase
LocationCla97Chr01: 24754084 .. 24754593 (+)
RNA-Seq ExpressionCla97C01G011968
SyntenyCla97C01G011968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

mRNA sequence

ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

Coding sequence (CDS)

ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

Protein sequence

MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTSTN
Homology
BLAST of Cla97C01G011968 vs. NCBI nr
Match: XP_038882325.1 (uncharacterized protein LOC120073574 [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-62
Identity = 120/160 (75.00%), Postives = 140/160 (87.50%), Query Frame = 0

Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD K RALEFQ+GDKVLIKLRP+QFRFRGQ+ QR+VRKYEGPV+VIEKVG+ SYRV
Sbjct: 41  MKKWADKKWRALEFQAGDKVLIKLRPEQFRFRGQKDQRLVRKYEGPVEVIEKVGRTSYRV 100

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
           QLPSWMKIHPVIHVS LKPYHPDP DE+RN++ RPPVTMK+  EK + +IL  +TRR+GR
Sbjct: 101 QLPSWMKIHPVIHVSILKPYHPDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRTRRIGR 160

Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ 161
           PRR+L EFLVKW+DL +EEISWERA+D ++A   IA FEQ
Sbjct: 161 PRRELTEFLVKWKDLPDEEISWERAKDSKNAAPAIANFEQ 200

BLAST of Cla97C01G011968 vs. NCBI nr
Match: XP_038885809.1 (uncharacterized protein LOC120076104 [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 108/141 (76.60%), Postives = 125/141 (88.65%), Query Frame = 0

Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD KRRALEFQ+GDKVLIKLRP++FRFRGQR QR+VRKYEGPV+VIEKVG+ SYRV
Sbjct: 33  MKKWADKKRRALEFQAGDKVLIKLRPEKFRFRGQRDQRLVRKYEGPVEVIEKVGRTSYRV 92

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
           QLPSWMKIHPVIHVS LKPYH DP DE+RN++ RPPVTMK+  EK + +IL  + RR+GR
Sbjct: 93  QLPSWMKIHPVIHVSILKPYHSDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRARRIGR 152

Query: 121 PRRDLKEFLVKWRDLLEEEIS 142
           PRR+L EFLVKW+DL +EEIS
Sbjct: 153 PRRELTEFLVKWKDLPDEEIS 173

BLAST of Cla97C01G011968 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 6.9e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1415 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1474

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 1475 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1534

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1535 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1582

BLAST of Cla97C01G011968 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 6.9e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 91  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 150

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
            LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 151 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 210

Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
           P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 211 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 258

BLAST of Cla97C01G011968 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 6.9e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 91  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 150

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
            LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 151 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 210

Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
           P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 211 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 258

BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPMEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

BLAST of Cla97C01G011968 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 0

Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K ++EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882325.14.3e-6275.00uncharacterized protein LOC120073574 [Benincasa hispida][more]
XP_038885809.13.9e-5576.60uncharacterized protein LOC120076104 [Benincasa hispida][more]
KAA0067557.16.9e-5262.50reverse transcriptase [Cucumis melo var. makuwa][more]
TYK19637.16.9e-5262.50reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta... [more]
KAA0037220.16.9e-5262.50reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C4R13.3e-5262.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3DBE03.3e-5262.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24... [more]
A0A5A7UXR63.3e-5262.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22... [more]
A0A5A7T0E23.3e-5262.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5D3BYE63.3e-5262.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 104..163
e-value: 1.8E-4
score: 30.9
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 105..169
score: 12.105
NoneNo IPR availableGENE3D2.40.50.40coord: 97..162
e-value: 1.2E-10
score: 42.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..98
NoneNo IPR availableCDDcd00024CD_CSDcoord: 104..160
e-value: 3.97936E-6
score: 40.1529
IPR023780Chromo domainPFAMPF00385Chromocoord: 106..161
e-value: 5.9E-10
score: 38.9
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 66..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G011968.1Cla97C01G011968.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity