Cla97C01G010930 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G010930
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA-directed RNA polymerase subunit beta''
Location	Cla97Chr01: 17410551 .. 17413376 (+)
RNA-Seq Expression	Cla97C01G010930
Synteny	Cla97C01G010930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCCTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCGGGATCTCTCTGGTAAAAACAAAAGTGGAAGTCCTGATTATTCAAAACTGAATCCAATCGTATGTACGAGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGTGGTGCACTTGATCCTCAAAACAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAAGGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTCGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCTGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATTGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTCTCGAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGTCTGGTACGAAATTTTCTACGAATAGACTCAATGAAATCCCGATACTTCGTATATCAGAAAAAGGAAAGAGCCGTCAGGTTCAGGATTGATCTTTAA

mRNA sequence

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCCTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCGGGATCTCTCTGGTAAAAACAAAAGTGGAAGTCCTGATTATTCAAAACTGAATCCAATCGTATGTACGAGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGTGGTGCACTTGATCCTCAAAACAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAAGGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTCTCGAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGTCTGGTACGAAATTTTCTACGAATAGACTCAATGAAATCCCGATACTTCGTATATCAGAAAAAGGAAAGAGCCGTCAGGTTCAGGATTGATCTTTAA

Coding sequence (CDS)

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCCTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCGGGATCTCTCTGGTAAAAACAAAAGTGGAAGTCCTGATTATTCAAAACTGAATCCAATCGTATGTACGAGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGTGGTGCACTTGATCCTCAAAACAGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAATACCAAAGGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTCTCGAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGTCTGGTACGAAATTTTCTACGAATAGACTCAATGAAATCCCGATACTTCGTATATCAGAAAAAGGAAAGAGCCGTCAGGTTCAGGATTGATCTTTAA

Protein sequence

MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHILPESSSIMWITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDSMKSRYFVYQKKERAVRFRIDL

Homology

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BLAST of Cla97C01G010930 vs. NCBI nr
Match: YP_010131084.1 (RNA polymerase beta'' subunit [Benincasa hispida] >QPZ75731.1 RNA polymerase beta'' subunit [Benincasa hispida])

HSP 1 Score: 1620.5 bits (4195), Expect = 0.0e+00
Identity = 820/932 (87.98%), Postives = 832/932 (89.27%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           M FVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MKFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
           MGPRCIGIRNQDIGIGLINRFITFQTQPI IRTPFTCR+TSWICRLCYGRSPTHGDLVEL
Sbjct: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPICIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD
Sbjct: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQINVHSLSVERRYISSLSVNN+KVRQKFYG DLSGKN+SG PDYS+LNPI+C  QSN 
Sbjct: 541 QDQINVHSLSVERRYISSLSVNNEKVRQKFYGLDLSGKNESGIPDYSELNPILCMGQSNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPING+FRRNSILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGLFRRNSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKYQ QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIYFPGEMDKI 780

Query: 781 ------------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTL 840
                                         WITPTKKKYFVFVRPVIIYEL DGINLVTL
Sbjct: 781 SRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEAR 851
           FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSS+EEAR
Sbjct: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

[Close]

BLAST of Cla97C01G010930 vs. NCBI nr
Match: YP_009525176.1 (RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94570.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94656.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94740.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94825.1 RNA polymerase beta subunit [Hodgsonia macrocarpa])

HSP 1 Score: 1613.2 bits (4176), Expect = 0.0e+00
Identity = 817/932 (87.66%), Postives = 831/932 (89.16%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIV+RRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVIRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
           MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCR+TSWICRLCYGRSPTHGDLVEL
Sbjct: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCG SVVPFSLYKD
Sbjct: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGSSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQINVHSLSVERRYISSLSVNN+KVRQKFYG DLSGKN+S  PDYS+LNPI+CT QSN 
Sbjct: 541 QDQINVHSLSVERRYISSLSVNNEKVRQKFYGPDLSGKNESRIPDYSELNPILCTGQSNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRR SILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRKSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKYQ QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780

Query: 781 ------------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTL 840
                                         WITPTKKKYFVFVRPVIIYEL DGINLVTL
Sbjct: 781 SRHNGILIPPERVKKNSKKSKKFKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEAR 851
           FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSS+EEAR
Sbjct: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

[Close]

BLAST of Cla97C01G010930 vs. NCBI nr
Match: QJS52311.1 (RNA polymerase beta'' subunit [Indofevillea khasiana])

HSP 1 Score: 1586.6 bits (4107), Expect = 0.0e+00
Identity = 801/923 (86.78%), Postives = 820/923 (88.84%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF +IDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPLIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISV+PGNRM+PERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNPGNRMVPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
           +GPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCR+ SWICRLCYGRSPTHGDLVEL
Sbjct: 301 IGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSISWICRLCYGRSPTHGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLV+PTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVYPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           R RKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLYKD
Sbjct: 481 RFRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQIN++SLSVERRYISSLSVNNDKVRQKFY  DLSGKN+SG  DYS+LN I+CT Q N 
Sbjct: 541 QDQINIYSLSVERRYISSLSVNNDKVRQKFYSSDLSGKNESGILDYSELNRIICTGQCNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI V  ILK EDLIEYRGVKDFKPKYQ QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVQSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRITLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780

Query: 781 ------------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTL 840
                                         WITPTKKKYFVFVRPVIIYEL DGINLVTL
Sbjct: 781 SRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEAR 842
           FPQDLLQERDNL+LRVVNYILYGNGK IRG+ GTSIQLVRTCLLLNWDRDKKSSS++EAR
Sbjct: 841 FPQDLLQERDNLKLRVVNYILYGNGKSIRGVFGTSIQLVRTCLLLNWDRDKKSSSIDEAR 900

[Close]

BLAST of Cla97C01G010930 vs. NCBI nr
Match: QWQ50133.1 (RNA polymerase beta'' subunit [Cyclanthera pedata])

HSP 1 Score: 1574.3 bits (4075), Expect = 0.0e+00
Identity = 801/921 (86.97%), Postives = 815/921 (88.49%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRT+GPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTVGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
            GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCR+TSWICRLCYGRSPT GDLVEL
Sbjct: 301 TGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLYKD
Sbjct: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQINVHSLSVERRYISSLSVNNDKVRQKFYG +LSGKN+SG   YS+LNPI+CT QSN 
Sbjct: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQSNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFII+F+SLQEREKELPP SGI IEIPINGIFRRNSILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKY  QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY--QMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780

Query: 781 -----------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTLF 840
                                        WITPTKKKYFVFVRPVIIYEL DGINLVTLF
Sbjct: 781 SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 840

[Close]

BLAST of Cla97C01G010930 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 1563.1 bits (4046), Expect = 0.0e+00
Identity = 791/891 (88.78%), Postives = 799/891 (89.67%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKN+SG
Sbjct: 481 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNESG 540

Query: 583 SPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 642
            PDYS+LNPI+CT QSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS
Sbjct: 541 IPDYSELNPILCTGQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 600

Query: 643 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKY 702
           IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703 QRQMKVDRFFFIPEEVHILPESSSIM---------------------------------- 762
           QRQMKVDRFFFIPEEVHILPESSSIM                                  
Sbjct: 661 QRQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763 ------------------------------------------------WITPTKKKYFVF 822
                                                           WITPTKKKYFVF
Sbjct: 721 ELKIFSGDIHFPREMDKISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVF 780

Query: 823 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 851
           VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1526.1 bits (3950), Expect = 0.0e+00
Identity = 771/890 (86.63%), Postives = 786/890 (88.31%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQTLIGRVLADDIYMGPRCIG+RNQDIGIGLINRFITFQTQPISIRTPFTCR+TSW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSGGSCGCS+VPFSLYKDQDQINVHSL VERRYISSLSVNNDKV QKFYG DLSGKN++G
Sbjct: 481 LSGGSCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENG 540

Query: 583 SPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 642
            PDYS+LNPI+CT QSN TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKEL PPSGIS
Sbjct: 541 IPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGIS 600

Query: 643 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKY 702
           IEIPINGIFRRNSILA+FDDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKY
Sbjct: 601 IEIPINGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703 QRQMKVDRFFFIPEEVHILPESSSIM---------------------------------- 762
           Q QMKVDRFFFIPEEVHILPESSSIM                                  
Sbjct: 661 QMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763 ------------------------------------------------WITPTKKKYFVF 822
                                                           WITPTKKKYFVF
Sbjct: 721 ELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVF 780

Query: 823 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 851
           VRPVIIYEL DGINLV LFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781 VRPVIIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTC 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1375.1 bits (3558), Expect = 0.0e+00
Identity = 696/880 (79.09%), Postives = 740/880 (84.09%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERA+LVFHNK IDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERANLVFHNKAIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            NFRMT+PFNPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 LNFRMTEPFNPVHIMSFSGARGNTSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQT IGRVLAD+IYMG RCI IRNQDIGIGL NRFITF+TQ ISIRTPFTCR+TSW
Sbjct: 241 ERIFIQTFIGRVLADNIYMGLRCIAIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFNEDLVHP RTRHGHPAFLCYIDLYVTI+S+DIIHNVTIPPKS LLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPIRTRHGHPAFLCYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAG YTLN KE+VRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGAYTLNFKEKVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSG SC  S+VPFSL+KDQDQ+NVHSLSV+RRYISS SVNND+V+ KF+  D SGK +SG
Sbjct: 481 LSGSSCRSSIVPFSLHKDQDQMNVHSLSVKRRYISSPSVNNDQVKHKFFSSDFSGKKESG 540

Query: 583 SPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 642
            PDYS+LN  +CT   N  Y  I   NSDLLAKRRRN FII F+S+QEREKEL   S IS
Sbjct: 541 IPDYSELNRSICTGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAIS 600

Query: 643 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKY 702
           IEIPINGIFRRNS+ AYFDDPQYR+ SSGITKYG I VH I+K EDLIEYRGVK+FKPKY
Sbjct: 601 IEIPINGIFRRNSVFAYFDDPQYRKKSSGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKY 660

Query: 703 QRQMKVDRFFFIPEEVHILPESSSIM---------------------------------- 762
             Q KVDRFFFIPEEV+ILPESSS+M                                  
Sbjct: 661 --QTKVDRFFFIPEEVYILPESSSLMVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKM 720

Query: 763 -------------------------------------------W-----ITPTKKKYFVF 822
                                                      W     ITPTKKKYFV 
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVL 780

Query: 823 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 841
           VRPVIIYE+ +GINL TLFPQDLLQE+DNL+LRVVNYILYG GKPIRGIS TSIQLVRTC
Sbjct: 781 VRPVIIYEIANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTC 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy Swiss-Prot
Match: Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1370.9 bits (3547), Expect = 0.0e+00
Identity = 699/889 (78.63%), Postives = 740/889 (83.24%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           M VLM ERA+LVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MGVLMTERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
            NFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 TNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP N MIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQTLIGRVLADDIYMGPRCI IRNQDIGIGL+NRFITFQ Q ISIRTPFTC++TSW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFNED VHPTRTRHGHPAFLCYIDLYVTIESE IIHNV IPPKS LLVQNDQYVES
Sbjct: 361 NGKIKFNEDWVHPTRTRHGHPAFLCYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAGTYT N KERVRKHIYSDSEGEMHWSTDVYHAPEFTY NVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSGGSC  S+VPFS++KDQDQ++V SLSVERRYIS+ SV ND+V  +F+  DLSGK +  
Sbjct: 481 LSGGSCRFSIVPFSIHKDQDQMSVRSLSVERRYISNPSVTNDQVIHEFFSSDLSGKKEGR 540

Query: 583 SPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 642
            P YS+LN I+ T + N   PAI + NSDLLAKRRRN FII F+S+QE EKEL PPSGIS
Sbjct: 541 IPAYSELNRIIYTGRYNLIDPAILHENSDLLAKRRRNRFIIPFQSIQEGEKELMPPSGIS 600

Query: 643 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKY 702
           IEIPINGIFRRNSILAYFDDP+YRRNSSGITKYGTI  H I+K EDLIEYRGVK+FKPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRGVKEFKPKY 660

Query: 703 QRQMKVDRFFFIPEEVHILPESSSIM---------------------------------- 762
             QMKVDRFFFIPEEVHILP S+SIM                                  
Sbjct: 661 --QMKVDRFFFIPEEVHILPGSASIMVRNNSIIGVDTRITLNTRSRVSGLVRVERKKKRI 720

Query: 763 -------------------------------------------W-----ITPTKKKYFVF 822
                                                      W     ITPTKKKYFV 
Sbjct: 721 ELKIFSGDIQFPGETNKISRHIGILIPPGTRKKNSKESKKLKNWIYVQGITPTKKKYFVL 780

Query: 823 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 850
           VRPV+ YE+ DGINL TLFPQDLLQERDN+ L+VVNYILYGNGKPIRGIS TSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLATLFPQDLLQERDNMHLQVVNYILYGNGKPIRGISDTSIQLVRTC 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1365.1 bits (3532), Expect = 0.0e+00
Identity = 691/881 (78.43%), Postives = 736/881 (83.54%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAER +LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERVNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQTLIGRVLADDIYMGPRCI IRNQDIGIGL+NRFITF+TQPISIRTPFTCR+TSW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFN+DLVHPTRTRHGHPAFLC IDLYVTIESEDI+HNVTIPPKS LLVQN+QYVES
Sbjct: 361 NGKIKFNDDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAGTYT NLKERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTFNLKERVRKHIYSESEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSGGSC  S VPFSLYKDQDQ+N+ S   ERRYISSLSVNND++R +    D SGK K  
Sbjct: 481 LSGGSCRSSRVPFSLYKDQDQMNLRSTERERRYISSLSVNNDQMRYELCSSDFSGKIKED 540

Query: 583 S-PDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGI 642
             PDYS+LN I+     N  YP  F+ NSDLLAKRRRN F+I  +S+QER+KEL P SGI
Sbjct: 541 RIPDYSELNRIISIVHCNLKYPTTFDENSDLLAKRRRNRFLIPLQSIQERKKELMPHSGI 600

Query: 643 SIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPK 702
           SIE+PINGI RRNSILAYFDDP+YRR SSGI KYGT+ VH ++K EDLIEYRG+K+FK K
Sbjct: 601 SIELPINGILRRNSILAYFDDPRYRRKSSGIIKYGTLGVHSVVKKEDLIEYRGIKEFKQK 660

Query: 703 YQRQMKVDRFFFIPEEVHILPESSSIM--------------------------------- 762
              QMK+D FFFIPEEVHI PESSSIM                                 
Sbjct: 661 C--QMKLDPFFFIPEEVHIFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKR 720

Query: 763 --------------------------------------------W-----ITPTKKKYFV 822
                                                       W     ITPTKKKYFV
Sbjct: 721 IELKIFSGDIHFPGETDKISRHSGILIPPGTGKTNFKESKKWKNWIYVQRITPTKKKYFV 780

Query: 823 FVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRT 841
            VRPV+ YE+ DGINL TLFP DLLQERDN++LRVVNYI+Y NGKPIRGIS TSIQLVRT
Sbjct: 781 LVRPVVTYEVLDGINLATLFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLVRT 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1356.3 bits (3509), Expect = 0.0e+00
Identity = 690/887 (77.79%), Postives = 737/887 (83.09%), Query Frame = 0


Query: 47  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106
           MAERA+LVFHNKVIDGTAIKRLISRLID FGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDRFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 107 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 166
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 167 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 226
           +TDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 VTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 227 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIF 286
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NR +PERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIF 240

Query: 287 IQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRL 346
           IQTLIGRVLADDIYMGPRCI IRNQDIGIGL+NRFITF+TQ ISIRTPFTCR+TSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRL 300

Query: 347 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 406
           CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+PSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKI 360

Query: 407 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 466
           KFNEDLVHPTRTRHGHPAFLCYIDL V IESEDIIHNVTIPPKS LLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVESEQVI 420

Query: 467 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 526
           AEIRAGTYTLN KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421 AEIRAGTYTLNYKERVRKHIYSNSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480

Query: 527 SCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDY 586
           S   S+VPFSL+KDQDQ+N+HSLSVE+  ISSL+VNND+ R KF+  + S K K G PDY
Sbjct: 481 SSRSSLVPFSLHKDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDY 540

Query: 587 SKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIP 646
           S+ + I+ T   N  Y A  + NSDLLAKRRRN FII F+S+QE+EKEL P SGISIEIP
Sbjct: 541 SEFHRILDTGHCNLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIP 600

Query: 647 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQM 706
           INGIFRRNSILA+FDDP+YRR SSGI KYGTI  H I+K ED+IEYRGVK FK KY  QM
Sbjct: 601 INGIFRRNSILAFFDDPRYRRKSSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKY--QM 660

Query: 707 KVDRFFFIPEEVHILPESSSIM-------------------------------------- 766
           KVDRFFFIPEEVHILPESSSIM                                      
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVERKKKSIELQI 720

Query: 767 ---------------------------------------W-----ITPTKKKYFVFVRPV 826
                                                  W     ITPTKKKYFV VRPV
Sbjct: 721 FSGDIHFPGKTDKISRHSGILIPPGRGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPV 780

Query: 827 IIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 852
             YE+ DGINL TLFPQDL +E+DN++LRVVNYILYGNGKP+RGI  TSIQLVRTCL+LN
Sbjct: 781 ATYEIADGINLATLFPQDLFREKDNMQLRVVNYILYGNGKPVRGIFDTSIQLVRTCLVLN 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy TrEMBL
Match: A0A7T3QNJ7 (RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 1620.5 bits (4195), Expect = 0.0e+00
Identity = 820/932 (87.98%), Postives = 832/932 (89.27%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           M FVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MKFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
           MGPRCIGIRNQDIGIGLINRFITFQTQPI IRTPFTCR+TSWICRLCYGRSPTHGDLVEL
Sbjct: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPICIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD
Sbjct: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQINVHSLSVERRYISSLSVNN+KVRQKFYG DLSGKN+SG PDYS+LNPI+C  QSN 
Sbjct: 541 QDQINVHSLSVERRYISSLSVNNEKVRQKFYGLDLSGKNESGIPDYSELNPILCMGQSNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPING+FRRNSILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGLFRRNSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKYQ QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIYFPGEMDKI 780

Query: 781 ------------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTL 840
                                         WITPTKKKYFVFVRPVIIYEL DGINLVTL
Sbjct: 781 SRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEAR 851
           FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSS+EEAR
Sbjct: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

[Close]

BLAST of Cla97C01G010930 vs. ExPASy TrEMBL
Match: A0A346QNZ0 (DNA-directed RNA polymerase subunit beta'' OS=Hodgsonia macrocarpa OX=2184935 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1613.2 bits (4176), Expect = 0.0e+00
Identity = 817/932 (87.66%), Postives = 831/932 (89.16%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIV+RRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVIRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
           MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCR+TSWICRLCYGRSPTHGDLVEL
Sbjct: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCG SVVPFSLYKD
Sbjct: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGSSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQINVHSLSVERRYISSLSVNN+KVRQKFYG DLSGKN+S  PDYS+LNPI+CT QSN 
Sbjct: 541 QDQINVHSLSVERRYISSLSVNNEKVRQKFYGPDLSGKNESRIPDYSELNPILCTGQSNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRR SILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRKSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKYQ QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780

Query: 781 ------------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTL 840
                                         WITPTKKKYFVFVRPVIIYEL DGINLVTL
Sbjct: 781 SRHNGILIPPERVKKNSKKSKKFKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEAR 851
           FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSS+EEAR
Sbjct: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEAR 900

[Close]

BLAST of Cla97C01G010930 vs. ExPASy TrEMBL
Match: A0A6M4SPN7 (DNA-directed RNA polymerase subunit beta'' OS=Indofevillea khasiana OX=383665 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1586.6 bits (4107), Expect = 0.0e+00
Identity = 801/923 (86.78%), Postives = 820/923 (88.84%), Query Frame = 0


Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF +IDSNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPLIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFS 180

Query: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240
           GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV
Sbjct: 181 GARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAV 240

Query: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIY 300
           RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISV+PGNRM+PERIFIQTLIGRVLADDIY
Sbjct: 241 RTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNPGNRMVPERIFIQTLIGRVLADDIY 300

Query: 301 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVEL 360
           +GPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCR+ SWICRLCYGRSPTHGDLVEL
Sbjct: 301 IGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSISWICRLCYGRSPTHGDLVEL 360

Query: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 420
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLV+PTRTRH
Sbjct: 361 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVYPTRTRH 420

Query: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480
           GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE
Sbjct: 421 GHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKE 480

Query: 481 RVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKD 540
           R RKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLYKD
Sbjct: 481 RFRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLYKD 540

Query: 541 QDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSPDYSKLNPIVCTSQSNF 600
           QDQIN++SLSVERRYISSLSVNNDKVRQKFY  DLSGKN+SG  DYS+LN I+CT Q N 
Sbjct: 541 QDQINIYSLSVERRYISSLSVNNDKVRQKFYSSDLSGKNESGILDYSELNRIICTGQCNL 600

Query: 601 TYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660
           TYPAIF+GNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF
Sbjct: 601 TYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYF 660

Query: 661 DDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQRQMKVDRFFFIPEEVHI 720
           DDPQYRRNSSGITKYGTI V  ILK EDLIEYRGVKDFKPKYQ QMKVDRFFFIPEEVHI
Sbjct: 661 DDPQYRRNSSGITKYGTIGVQSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHI 720

Query: 721 LPESSSIM---------------------------------------------------- 780
           LPESSSIM                                                    
Sbjct: 721 LPESSSIMVRNNSIIGVATRITLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 780

Query: 781 ------------------------------WITPTKKKYFVFVRPVIIYELTDGINLVTL 840
                                         WITPTKKKYFVFVRPVIIYEL DGINLVTL
Sbjct: 781 SRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 840

Query: 841 FPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLEEAR 842
           FPQDLLQERDNL+LRVVNYILYGNGK IRG+ GTSIQLVRTCLLLNWDRDKKSSS++EAR
Sbjct: 841 FPQDLLQERDNLKLRVVNYILYGNGKSIRGVFGTSIQLVRTCLLLNWDRDKKSSSIDEAR 900

[Close]

BLAST of Cla97C01G010930 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1563.1 bits (4046), Expect = 0.0e+00
Identity = 791/891 (88.78%), Postives = 799/891 (89.67%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKN+SG
Sbjct: 481 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNESG 540

Query: 583 SPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 642
            PDYS+LNPI+CT QSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS
Sbjct: 541 IPDYSELNPILCTGQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 600

Query: 643 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKY 702
           IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703 QRQMKVDRFFFIPEEVHILPESSSIM---------------------------------- 762
           QRQMKVDRFFFIPEEVHILPESSSIM                                  
Sbjct: 661 QRQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763 ------------------------------------------------WITPTKKKYFVF 822
                                                           WITPTKKKYFVF
Sbjct: 721 ELKIFSGDIHFPREMDKISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVF 780

Query: 823 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 851
           VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

[Close]

BLAST of Cla97C01G010930 vs. ExPASy TrEMBL
Match: A0A1P8LF52 (DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1563.1 bits (4046), Expect = 0.0e+00
Identity = 791/891 (88.78%), Postives = 799/891 (89.67%), Query Frame = 0


Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282
           EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 283 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 342
           ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSW 300

Query: 343 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 402
           ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPS 360

Query: 403 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 462
           NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVES 420

Query: 463 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 522
           EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWI 480

Query: 523 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSG 582
           LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKN+SG
Sbjct: 481 LSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNESG 540

Query: 583 SPDYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 642
            PDYS+LNPI+CT QSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS
Sbjct: 541 IPDYSELNPILCTGQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGIS 600

Query: 643 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKY 702
           IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTI VH ILK EDLIEYRGVKDFKPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKY 660

Query: 703 QRQMKVDRFFFIPEEVHILPESSSIM---------------------------------- 762
           QRQMKVDRFFFIPEEVHILPESSSIM                                  
Sbjct: 661 QRQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRI 720

Query: 763 ------------------------------------------------WITPTKKKYFVF 822
                                                           WITPTKKKYFVF
Sbjct: 721 ELKIFSGDIHFPREMDKISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVF 780

Query: 823 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 851
           VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC
Sbjct: 781 VRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTC 840

[Close]

BLAST of Cla97C01G010930 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 1300.0 bits (3363), Expect = 0.0e+00
Identity = 664/890 (74.61%), Postives = 721/890 (81.01%), Query Frame = 0


Query: 47  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 107 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 166
           DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 167 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 226
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 227 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPER 286
           SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP   NRM+ ER
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240

Query: 287 IFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWIC 346
           IFIQTLIGRVLADDIY+G RC+  RNQD+GIGL+NR ITF TQ ISIRTPFTCR+TSWIC
Sbjct: 241 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC 300

Query: 347 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNG 406
           RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NG
Sbjct: 301 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 360

Query: 407 KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQ 466
           KIKFNEDLVHPTRTRHGHPAFLCYIDL V IESEDIIH+VTIPPKS LLVQNDQYVESEQ
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 420

Query: 467 VIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILS 526
           VIAEIR GTYT + KERVRK+IYSDSEGEMHWSTDV HAPEFTYSNVHLLPKTSHLWILS
Sbjct: 421 VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 480

Query: 527 GGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGRDLSGKNKSGSP 586
           GGSCG S++ FS++KDQDQ+N+  LS ER+ ISSLSVNND+V QKF+  D +   K G  
Sbjct: 481 GGSCGSSLIRFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIY 540

Query: 587 DYSKLNPIVCTSQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIE 646
           DYS+LN  + TS  N  Y AIF+ NSDLLAKRRRN F+I F+S+QE+EKE  P SGIS+E
Sbjct: 541 DYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPQSGISVE 600

Query: 647 IPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIVVHLILKTEDLIEYRGVKDFKPKYQR 706
           IPINGIFRRNSI A+FDDP+YRR SSGI KYGT+    I++ ED+IEYRGV+  K KY  
Sbjct: 601 IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKY-- 660

Query: 707 QMKVDRFFFIPEEVHILPESSSIM------------------------------------ 766
           +MKVDRFFFIPEEVHILPESS+IM                                    
Sbjct: 661 EMKVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIEL 720

Query: 767 -----------------------------------------W-----ITPTKKKYFVFVR 826
                                                    W     ITPTKKK+FV VR
Sbjct: 721 KIFSGDIHFPDKTDKISRHSGILIPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVR 780

Query: 827 PVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLL 853
           PV  YE+ D INL TLFPQDL +E+DN++LRV NYILYGNGKP RGIS TSIQLVRTCL+
Sbjct: 781 PVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLV 840

[Close]

BLAST of Cla97C01G010930 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 77.4 bits (189), Expect = 6.2e-14
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 0


Query: 172  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 231
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 232  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI------VVRRTD 291
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ +       VR  D
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055

Query: 292  CGTIR------GISVSPGN--RMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 351
               I+      G+ V   +      E    Q ++ +  ++D+  G         D+ I L
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSY---ISDLPISL 1115

Query: 352  INRFITF-QTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPG 389
                  F +  P++ R          + +L   +S     L + GE VG++A QS+GEP 
Sbjct: 1116 KKGAEKFVEAMPMNERIASKFVRQEELLKLV--KSKFFASLAQPGEPVGVLAAQSVGEPS 1175

[Close]

BLAST of Cla97C01G010930 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-10
Identity = 55/219 (25.11%), Postives = 96/219 (43.84%), Query Frame = 0


Query: 211  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 270
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 835  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894

Query: 271  GIS----------------VSPGNRMIP---ERIFIQT-LIGRVLADDIYMGPRCIG--- 330
              S                +  G    P    R+F++        +   Y+    +    
Sbjct: 895  NASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKF 954

Query: 331  ----IRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRNTSWICRLCYGR 390
                +R+       D  +  +  F++          Q +   +  T +      ++C  R
Sbjct: 955  EEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR 1014

[Close]

BLAST of Cla97C01G010930 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-10
Identity = 55/219 (25.11%), Postives = 96/219 (43.84%), Query Frame = 0


Query: 211  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 270
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 852  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911

Query: 271  GIS----------------VSPGNRMIP---ERIFIQT-LIGRVLADDIYMGPRCIG--- 330
              S                +  G    P    R+F++        +   Y+    +    
Sbjct: 912  NASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKF 971

Query: 331  ----IRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRNTSWICRLCYGR 390
                +R+       D  +  +  F++          Q +   +  T +      ++C  R
Sbjct: 972  EEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR 1031

[Close]

BLAST of Cla97C01G010930 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-06
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 211 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 270
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876

HSP 2 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 357  LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 390
            LV  GE +G +A QSIGEP TQ+TL TFH  GV
Sbjct: 1077 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1109

The following BLAST results are available for this feature:

BLAST of Cla97C01G010930 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010131084.1	0.0e+00	87.98	RNA polymerase beta'' subunit [Benincasa hispida] >QPZ75731.1 RNA polymerase bet...	[more]
YP_009525176.1	0.0e+00	87.66	RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94570.1 RNA polymerase be...	[more]
QJS52311.1	0.0e+00	86.78	RNA polymerase beta'' subunit [Indofevillea khasiana]	[more]
QWQ50133.1	0.0e+00	86.97	RNA polymerase beta'' subunit [Cyclanthera pedata]	[more]
APW82621.1	0.0e+00	88.78	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]

BLAST of Cla97C01G010930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	0.0e+00	86.63	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B1NWE0	0.0e+00	79.09	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
Q0ZJ30	0.0e+00	78.63	DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P...	[more]
Q49L08	0.0e+00	78.43	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
B1A925	0.0e+00	77.79	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]

BLAST of Cla97C01G010930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T3QNJ7	0.0e+00	87.98	RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1	[more]
A0A346QNZ0	0.0e+00	87.66	DNA-directed RNA polymerase subunit beta'' OS=Hodgsonia macrocarpa OX=2184935 GN...	[more]
A0A6M4SPN7	0.0e+00	86.78	DNA-directed RNA polymerase subunit beta'' OS=Indofevillea khasiana OX=383665 GN...	[more]
A0A1P8LFL6	0.0e+00	88.78	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A1P8LF52	0.0e+00	88.78	DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rp...	[more]

BLAST of Cla97C01G010930 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	0.0e+00	74.61	DNA-directed RNA polymerase family protein	[more]
AT3G57660.1	6.2e-14	27.78	nuclear RNA polymerase A1	[more]
AT5G60040.1	1.4e-10	25.11	nuclear RNA polymerase C1	[more]
AT5G60040.2	1.4e-10	25.11	nuclear RNA polymerase C1	[more]
AT4G35800.1	4.8e-06	38.33	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 105..242 e-value: 4.7E-47 score: 161.6
IPR012756	DNA-directed RNA polymerase, subunit beta''	TIGRFAM	TIGR02388	TIGR02388	coord: 54..550 e-value: 2.7E-143 score: 476.8
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 31..104 e-value: 3.1E-11 score: 45.6
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 218..404 e-value: 1.5E-39 score: 136.0
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 141..203 e-value: 2.8E-10 score: 40.1
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 47..728
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 728..850
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 728..850 coord: 47..728
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 49..756

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G010930.1	Cla97C01G010930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding