Cla97C01G010215 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G010215
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionTransposon Tf2-1 polyprotein isoform X1
LocationCla97Chr01: 14595391 .. 14596613 (+)
RNA-Seq ExpressionCla97C01G010215
SyntenyCla97C01G010215
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAGGAAGCAACTACCATGACTGCAATGATGGTGAGTCCTCAAGGAGGGAAGATTCGATAACGAAACAATGTAGGTTTAATATTGAGATGCTAGTGTTTTTAGGAGTAGATTCAGACTAGTGGTTGTTCTGCACTGAATGGTACTTTGACATTCATAAGTTATTTGATGTGGAAAAGTTAAGGGTGGTTGTCATAAGCTTTGAGGGAAAAGCGATAAGTGGTATGGATGGGCTGTGAATGAAGAACCCTTTCAGGGTGGATGAAGGTAAAGGCTCAAATTTTTGAGAGATTTCAACTGTTGCAGGAGGGGAATTTGTGTGCATGGTTATTTGTCATGAAGTTGGAGGGAAGGATTGCAGATTGTCATGAACTTTCTAAAGGGCTGTGGTGATGCCTTTTAGAACACTTTTTTAATTGGGCTAACTCGTCAAATTAGGGAAGACTTCCTTAGTCGTGGGCTTAAAAAATATTTTGAGGCAAGTCCAACTCATAGAGGATAGGGAGCCAGTGTTCCAATTGGCCCAAGAATCAGAAGATCCAAGTTACGCCACAAACTTAACAAAAGGAGGTGGGAGCGGAAATGGGTTGAATAAAATGACCCAGTCAACAGTATGGAAATCCTCATGTTGAGTGGCTAACTCAATCCTATTCACATTGTGACTTTGCCAGAAAAAAAGGGGTGGAGCGAAGTGGGAGCCTAATTTGAAACAAATATCTAAGAAAGAATTTCATGTGCGAAAAGGGAAGGGGCTTTTTTGCGTTGCAAATTGCAACAAGAAGTATTCAATTGGCCATTGTTGTAAGCTATAAGAGATAAGAATCGTGTTTGCACGTGAAGAGGGAGAAGTCGAGATGGATATAGAGGAATCGGTGTTGGGATTTTCAAGTCTGAGCATGATCAAGCTCAGAGGAAAAGTGGGAGACCACAAGGTTTTAGTACTGATTGACTATGAGACGACCCTTAATTTTATATACATCATGTTGGTTGAATAGTTGAACTTGAACCTTATGCTATTAGAAACAACAAATTCTAGGGTCATCATGGAGAAATGGGGCAACAACAACGGGGCATGGAGTATGATCACAAAGATGATGGTAGAGGATCTCCTCCTGCTTGATTTAGGAGGGGTTATATGATTGGCATTGGGATTTTTGTGTCTGGGCATGATCAAGCTCAAAGTAAAAATGGGAGACCACGATGTTCAGGGCAACCCATAA

mRNA sequence

ATGTCGGAGGAAGCAACTACCATGACTGCAATGATGTGGTTGTTCTGCACTGAATGGTACTTTGACATTCATAAGTTATTTGATGTGGAAAAGTTAAGGGTGGTTGTCATAAGCTTTGAGGGAAAAGCGATAAGTGGGTGGATGAAGGTAAAGGCTCAAATTTTTGAGAGATTTCAACTGTTGCAGGAGGGGAATTTGTGTGCATGGTTATTTGTCATGAAGTTGGAGGGAAGGATTGCAGATTGTCATGAACTTTCTAAAGGGCTGCAAGTCCAACTCATAGAGGATAGGGAGCCAGTGTTCCAATTGGCCCAAGAATCAGAAGATCCAAGTTACGCCACAAACTTAACAAAAGGAGGTGGGAGCGGAAATGGGTTGAATAAAATGACCCAGTCAACAGGAAGGGGCTTTTTTGCGTTGCAAATTGCAACAAGAAGTATTCAATTGGCCATTGTTGGAGAAGTCGAGATGGATATAGAGGAATCGGTGTTGGGATTTTCAAGTCTGAGCATGATCAAGCTCAGAGGAAAAGTGGGAGACCACAAGGTTTTATTGAACTTGAACCTTATGCTATTAGAAACAACAAATTCTAGGGTCATCATGGAGAAATGGGGCAACAACAACGGGGCATGGAGTATGATCACAAAGATGATGGTAGAGGATCTCCTCCTGCTTGATTTAGGAGGGCTCAAAGTAAAAATGGGAGACCACGATGTTCAGGGCAACCCATAA

Coding sequence (CDS)

ATGTCGGAGGAAGCAACTACCATGACTGCAATGATGTGGTTGTTCTGCACTGAATGGTACTTTGACATTCATAAGTTATTTGATGTGGAAAAGTTAAGGGTGGTTGTCATAAGCTTTGAGGGAAAAGCGATAAGTGGGTGGATGAAGGTAAAGGCTCAAATTTTTGAGAGATTTCAACTGTTGCAGGAGGGGAATTTGTGTGCATGGTTATTTGTCATGAAGTTGGAGGGAAGGATTGCAGATTGTCATGAACTTTCTAAAGGGCTGCAAGTCCAACTCATAGAGGATAGGGAGCCAGTGTTCCAATTGGCCCAAGAATCAGAAGATCCAAGTTACGCCACAAACTTAACAAAAGGAGGTGGGAGCGGAAATGGGTTGAATAAAATGACCCAGTCAACAGGAAGGGGCTTTTTTGCGTTGCAAATTGCAACAAGAAGTATTCAATTGGCCATTGTTGGAGAAGTCGAGATGGATATAGAGGAATCGGTGTTGGGATTTTCAAGTCTGAGCATGATCAAGCTCAGAGGAAAAGTGGGAGACCACAAGGTTTTATTGAACTTGAACCTTATGCTATTAGAAACAACAAATTCTAGGGTCATCATGGAGAAATGGGGCAACAACAACGGGGCATGGAGTATGATCACAAAGATGATGGTAGAGGATCTCCTCCTGCTTGATTTAGGAGGGCTCAAAGTAAAAATGGGAGACCACGATGTTCAGGGCAACCCATAA

Protein sequence

MSEEATTMTAMMWLFCTEWYFDIHKLFDVEKLRVVVISFEGKAISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPVFQLAQESEDPSYATNLTKGGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDIEESVLGFSSLSMIKLRGKVGDHKVLLNLNLMLLETTNSRVIMEKWGNNNGAWSMITKMMVEDLLLLDLGGLKVKMGDHDVQGNP
Homology
BLAST of Cla97C01G010215 vs. NCBI nr
Match: KAA0066078.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-04
Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V VISF+G A+            + W  +K+++ ERF+ 
Sbjct: 149 WLFRADRYFQIHKLTDAEKMTVSVISFDGPALDWFRSQEQRNKFTDWSNLKSRLLERFRS 208

Query: 73  LQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPVFQ 103
           ++EG+L    F  K    + +   L   L   L +  + V +
Sbjct: 209 IREGSLYGKFFATKQTTTVEEYQNLFDRLVAPLSDLSDKVLE 250

BLAST of Cla97C01G010215 vs. NCBI nr
Match: KAA0033137.1 (polyprotein [Cucumis melo var. makuwa] >TYK17096.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-04
Identity = 51/224 (22.77%), Postives = 98/224 (43.75%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEG------------KAISGWMKVKAQIFERFQL 72
           WLF  + YF IH L D EKL V V+SF+G            +A +GW  +K ++  RF++
Sbjct: 12  WLFRADRYFKIHNLSDSEKLTVAVMSFDGPALDWYRSQEEREAFTGWDDLKQKMLMRFRV 71

Query: 73  LQEGNLCAWLFVMKLEGRIADCHE------------LSKGLQVQLIEDREPVFQLAQESE 132
            +EG L      +K E  + +                +  L+   +    P  +   E+ 
Sbjct: 72  TREGTLVGRFLTIKQETTVEEYRNHFDKLLAPVAFLPTVVLEETFMNGLNPWLKFEVETL 131

Query: 133 DPSYATNLTK------GGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDI-EE 192
           +P+    + K          G  L  + +     FF  +I  +  ++  V  + +++   
Sbjct: 132 EPNGLAQMMKLALKIENREGGEELEIVEEE----FFDAEIEIKQAEVQNVENLNIELFIN 191

Query: 193 SVLGFSSLSMIKLRGKVGDHKVLLNLNLMLLETTNSRVIMEKWG 206
           SV+G S+   +K++GK+G+ +V++ ++  +     +  I+ K G
Sbjct: 192 SVVGLSNPGTMKVKGKIGEEEVVILIDCGVTHNFIAEKIVTKLG 231

BLAST of Cla97C01G010215 vs. NCBI nr
Match: KAA0037388.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-04
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ 
Sbjct: 676 WLFRADRYFQIHKLTDAEKMTVSVISFDGPTLDWFRSQEQRNKFTDWSNLKSKLLERFRS 735

Query: 73  LQEGNLCAWLFVMK 75
           ++EG+L   +F +K
Sbjct: 736 IREGSLYDKIFAIK 749

BLAST of Cla97C01G010215 vs. NCBI nr
Match: TYJ97524.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-04
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ 
Sbjct: 676 WLFRADRYFQIHKLTDAEKMTVSVISFDGPTLDWFRSQEQRNKFTDWSNLKSKLLERFRS 735

Query: 73  LQEGNLCAWLFVMK 75
           ++EG+L   +F +K
Sbjct: 736 IREGSLYDKIFAIK 749

BLAST of Cla97C01G010215 vs. NCBI nr
Match: XP_031745972.1 (uncharacterized protein LOC116406393 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-03
Identity = 28/81 (34.57%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V  ISFEG A+            +GW  +K ++  RF+ 
Sbjct: 127 WLFRADRYFQIHKLSDAEKVLVATISFEGPALNWYRAQEERDKFTGWHNLKERLLVRFRS 186

Query: 73  LQEGNLCAWLFVMKLEGRIAD 82
            +EG++C     +K +  + +
Sbjct: 187 SREGSICGQFLRIKQQTTVEE 207

BLAST of Cla97C01G010215 vs. ExPASy TrEMBL
Match: A0A5D3BLG2 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00210 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-05
Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V VISF+G A+            + W  +K+++ ERF+ 
Sbjct: 149 WLFRADRYFQIHKLTDAEKMTVSVISFDGPALDWFRSQEQRNKFTDWSNLKSRLLERFRS 208

Query: 73  LQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPVFQ 103
           ++EG+L    F  K    + +   L   L   L +  + V +
Sbjct: 209 IREGSLYGKFFATKQTTTVEEYQNLFDRLVAPLSDLSDKVLE 250

BLAST of Cla97C01G010215 vs. ExPASy TrEMBL
Match: A0A5A7SUY2 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00290 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-05
Identity = 51/224 (22.77%), Postives = 98/224 (43.75%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEG------------KAISGWMKVKAQIFERFQL 72
           WLF  + YF IH L D EKL V V+SF+G            +A +GW  +K ++  RF++
Sbjct: 12  WLFRADRYFKIHNLSDSEKLTVAVMSFDGPALDWYRSQEEREAFTGWDDLKQKMLMRFRV 71

Query: 73  LQEGNLCAWLFVMKLEGRIADCHE------------LSKGLQVQLIEDREPVFQLAQESE 132
            +EG L      +K E  + +                +  L+   +    P  +   E+ 
Sbjct: 72  TREGTLVGRFLTIKQETTVEEYRNHFDKLLAPVAFLPTVVLEETFMNGLNPWLKFEVETL 131

Query: 133 DPSYATNLTK------GGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDI-EE 192
           +P+    + K          G  L  + +     FF  +I  +  ++  V  + +++   
Sbjct: 132 EPNGLAQMMKLALKIENREGGEELEIVEEE----FFDAEIEIKQAEVQNVENLNIELFIN 191

Query: 193 SVLGFSSLSMIKLRGKVGDHKVLLNLNLMLLETTNSRVIMEKWG 206
           SV+G S+   +K++GK+G+ +V++ ++  +     +  I+ K G
Sbjct: 192 SVVGLSNPGTMKVKGKIGEEEVVILIDCGVTHNFIAEKIVTKLG 231

BLAST of Cla97C01G010215 vs. ExPASy TrEMBL
Match: A0A5D3BEN4 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00350 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ 
Sbjct: 676 WLFRADRYFQIHKLTDAEKMTVSVISFDGPTLDWFRSQEQRNKFTDWSNLKSKLLERFRS 735

Query: 73  LQEGNLCAWLFVMK 75
           ++EG+L   +F +K
Sbjct: 736 IREGSLYDKIFAIK 749

BLAST of Cla97C01G010215 vs. ExPASy TrEMBL
Match: A0A5A7T3M0 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00950 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQL 72
           WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ 
Sbjct: 676 WLFRADRYFQIHKLTDAEKMTVSVISFDGPTLDWFRSQEQRNKFTDWSNLKSKLLERFRS 735

Query: 73  LQEGNLCAWLFVMK 75
           ++EG+L   +F +K
Sbjct: 736 IREGSLYDKIFAIK 749

BLAST of Cla97C01G010215 vs. ExPASy TrEMBL
Match: A0A5A7SZC7 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00430 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 28/85 (32.94%), Postives = 42/85 (49.41%), Query Frame = 0

Query: 13  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKA------------ISGWMKVKAQIFERFQL 72
           WLF  + YF IH L D EK+ V V+SF+G A               W  +K ++  RFQ 
Sbjct: 48  WLFQVDRYFQIHNLTDSEKMIVAVVSFDGAASNWYRSQEECNKFKDWADLKQRLLVRFQS 107

Query: 73  LQEGNLCAWLFVMKLEGRIADCHEL 86
           ++EG++C     +K E  + +   L
Sbjct: 108 IREGSICGRFLAIKQESSVEEYRNL 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066078.11.5e-0432.35transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 t... [more]
KAA0033137.12.0e-0422.77polyprotein [Cucumis melo var. makuwa] >TYK17096.1 polyprotein [Cucumis melo var... [more]
KAA0037388.15.9e-0437.84transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
TYJ97524.15.9e-0437.84transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
XP_031745972.11.0e-0334.57uncharacterized protein LOC116406393 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BLG27.5e-0532.35Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SUY29.7e-0522.77Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00290 P... [more]
A0A5D3BEN42.8e-0437.84Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T3M02.8e-0437.84Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SZC74.8e-0432.94Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G010215.1Cla97C01G010215.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process