Cla97C01G001820 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G001820
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	RING-type domain-containing protein
Location	Cla97Chr01: 1645916 .. 1648186 (-)
RNA-Seq Expression	Cla97C01G001820
Synteny	Cla97C01G001820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCCTCAAACTCCATCCCCTCCTCATCTTTACCCTCAAGCACTTCAACTTAAGCTTTATCAAGCCTTCATATTCTCCATTCCAATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCCTCTCTCTCTTCTTCTTCTTCTTCATCTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACAACTGTAAGCAAATATTCCTCTGTTTCTCAATCTTCCAATTTTCCTTTTTGGTGTTTCCATTGCTGTAATTTGCTTTTGGAGGGTCAGAGAATCTAAGAAAAAAAGATTGAAGCTTTAATTTTTGTCTTTCTTTTTTTTTTTTTTTAATTCATTTTCTGTGATTTGTTGCCAATTTTTCTTCATCTCATTGATCTTAATTGTTCAGGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCAATTCAATGAAGAACTAAGGACTAGAGATTCTCTGTAAGTATCACCATTTCTGATTGTTTACACAAAAAAAAAAAAAAAAAAAAAAAAGGCTCTTGGCTTTTTGGGGTTCTTTTGAAAGCAAAAAAGATGTTCATGAACAGTGGTTCCTCTAAATGGGTTTGGAATACTGAATTTACAAAATTTGCCAATTGATCCTTTGCCACCCACTTGCACAAATTGATATAGGTTACATGAATTGAAGAGTTGTTTTTTCTTTTTTTTTTTTTTTTGCCTTCCTTCCTTTCTCTTTAAAAAATTTCCAATACAAATCAATAGCTGCAAAACATTTCCATTAGAATAGCATGGAATTAACATCACTCCACAAAAACATATACTAATGTGTTACATTTGCTTCCCATGAAAAGTTTTATTTTTTTCTTTATTGAGTTCGTCAATGACCAAAGTGGAAGAACGATCCAAACTTTTAGAATGATACTTAGTGTCTTATTGAGGGAGCTATATTTGAATTGACACTTAAAAAGTTAAAAAAAAAAAAAAATTAGATATACAGAATAGTCAAGAGATTGAGATGGAAAGATTTAGTGACTTAAATAGGGAGCACACATAACAAACAATAAAAAGATAAAAGTGAAACTGATCCTTTTTCAATTTTTGTTGATTTTTTAGATTTCTTTTCTTTGGAGGATTGGAATCTTTTATAGCATCCGCTCTTTAATTTCTCAAAAGTGGCTTTTAAATTTTTGGTTCTAAAAGTTACTTTTGTATTTGTTTTCTTGAAAGGTGTTGTTTGTAGAACCTTAGGCCGACAAAATTGATATTGAAGATGAAGAGCATGTTTAATTTTTTTTCTCTTTTTCTAGTAATTATGTTGCAATCTTATTTCTAAGGATTATTCTTTATTCTTGTATTACTTTTATAAATAGTTTGATGAACTAATTTAAATCTCATGTTTGAGCACTACTACTAGATGGCCAAGTTTGTCATTAATTTTAAACTCTCATGTATCTTCACACTGATTGGTCTTTTTTGTTTATAGATCTAAATTTCTCATTTCTTTCTTTGGTCTACTTGCATAAATCTAGTAGTTAGCCTCAGAAAAATTTTTTTGTACTCATTTTCTAGTACTACAAGAGTACTATACTCCATTTGTTAACACTAATAAATTTATCTTCATAAATATTAGAAGACCCTATAGCATATGTGAATTTTCCTAAATCTCTTTTCATAGTGCGTTCAACAACACAGAGGATGAAAGATTTAAACATTTGACCTCTTGATCATAAATATATGCCTTAACTAGTTGAGTTGTTTCCGGTTTCTTGCCGCTTGTAATTCAACTTCTCCCAATTGTGGGGGAGAGAGAGAGATTGAGATTTGAAGTCAACCTTATATTGTCCTTAGGATATGTGGGGTTAGAAATGAACAATTGAAACAAAGCTATAACTTTCTTATCCATTTAACAGGTGCTGCGTCTGCCTGGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGACTGTATGAACCATTGGCTCATCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCCGATGTTCTGATCCGCCCATCATTGCACCACCCCCACCCCCGCCACCGCCACTAGCTGGCTCAGCAGAGCTTCCCCTGACTTCCAACCAGACTGCAGAGATGGGATCCTATTCACTCCAACATCTGCAGCTGCAACAACGGGAAGGATCAAGTCAAAGTATATGCTAA

mRNA sequence

ATGGGTTTGCCTCAAACTCCATCCCCTCCTCATCTTTACCCTCAAGCACTTCAACTTAAGCTTTATCAAGCCTTCATATTCTCCATTCCAATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCCTCTCTCTCTTCTTCTTCTTCTTCATCTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACAACTGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCAATTCAATGAAGAACTAAGGACTAGAGATTCTCTGTGCTGCGTCTGCCTGGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGACTGTATGAACCATTGGCTCATCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCCGATGTTCTGATCCGCCCATCATTGCACCACCCCCACCCCCGCCACCGCCACTAGCTGGCTCAGCAGAGCTTCCCCTGACTTCCAACCAGACTGCAGAGATGGGATCCTATTCACTCCAACATCTGCAGCTGCAACAACGGGAAGGATCAAGTCAAAGTATATGCTAA

Coding sequence (CDS)

ATGGGTTTGCCTCAAACTCCATCCCCTCCTCATCTTTACCCTCAAGCACTTCAACTTAAGCTTTATCAAGCCTTCATATTCTCCATTCCAATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACTTGTTTTATCTCAAAAGAAGAGCTTCCTCTCTCTCTTCTTCTTCTTCTTCATCTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACAACTGCTTGTCAAGTGGATTTGAAGGCAGATAATCCCATAGACAAACTTCCCAAGATCCAATTCAATGAAGAACTAAGGACTAGAGATTCTCTGTGCTGCGTCTGCCTGGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGACTGTATGAACCATTGGCTCATCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCCGATGTTCTGATCCGCCCATCATTGCACCACCCCCACCCCCGCCACCGCCACTAGCTGGCTCAGCAGAGCTTCCCCTGACTTCCAACCAGACTGCAGAGATGGGATCCTATTCACTCCAACATCTGCAGCTGCAACAACGGGAAGGATCAAGTCAAAGTATATGCTAA

Protein sequence

MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAGSAELPLTSNQTAEMGSYSLQHLQLQQREGSSQSIC

Homology

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BLAST of Cla97C01G001820 vs. NCBI nr
Match: XP_038907033.1 (probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida])

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-101
Identity = 199/214 (92.99%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEE 120
           PPILPTTSNTLTLYVTTACQVDLKADN I+KLPKIQF+EEL+TRDSLCCVCLGEFEIKE+
Sbjct: 61  PPILPTTSNTLTLYVTTACQVDLKADNLIEKLPKIQFDEELKTRDSLCCVCLGEFEIKEQ 120

Query: 121 LLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAGSAE 180
           LLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPP IA    PPPPLAGS+E
Sbjct: 121 LLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPGIA----PPPPLAGSSE 180

Query: 181 LPLTSNQTAEMGSYSLQHLQL--QQREGSSQSIC 213
           LP TSNQTAEMGSYSLQHLQL  QQ+EGSSQSIC
Sbjct: 181 LPPTSNQTAEMGSYSLQHLQLQQQQQEGSSQSIC 210

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BLAST of Cla97C01G001820 vs. NCBI nr
Match: XP_022928899.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 195/216 (90.28%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  ---PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEI 120
              PPILPTTSNTLTLYVTTACQVDLKADNP+DKLPKI FNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAG 180
           KEELLQVPSCKHVFHIDCMNHWL SNSTCPLCRCSVIPTTRC DPP++  PPPPPP  AG
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPP--AG 180

Query: 181 SAELPLTSNQTAEMGSYSLQHLQL-QQREGSSQSIC 213
           S+ELPLTSNQTAEM SYSL H QL QQ+EGSSQSIC
Sbjct: 181 SSELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

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BLAST of Cla97C01G001820 vs. NCBI nr
Match: KAG6579565.1 (30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.0 bits (933), Expect = 8.8e-97
Identity = 192/213 (90.14%), Postives = 198/213 (92.96%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS--- 63
           PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS   
Sbjct: 192 PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 251

Query: 64  PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEE 123
           PPILPTTSNTLTLYVTTACQVDLKADNP+DKLPKI FNEELRTRDSLCCVCLGEFEIKEE
Sbjct: 252 PPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEE 311

Query: 124 LLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAGSAE 183
           LLQVPSCKHVFHIDCMNHWL SNSTCPLCRCSVIPTTRC DPP++  PPPPPP  AGS+E
Sbjct: 312 LLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPP--AGSSE 371

Query: 184 LPLTSNQTAEMGSYSLQHLQL-QQREGSSQSIC 213
           LP TSNQTAEM SYSL H QL QQ+EGSSQSIC
Sbjct: 372 LPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402

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BLAST of Cla97C01G001820 vs. NCBI nr
Match: XP_023534491.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.0 bits (933), Expect = 8.8e-97
Identity = 194/220 (88.18%), Postives = 201/220 (91.36%), Query Frame = 0


Query: 1   MGLPQTP-SPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG+PQTP +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  S--PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEI 120
           S  PPILPTTSN LTLYVTTAC+VDLKADNPIDKLPKI FNEELR+RDSLCCVCLGEFEI
Sbjct: 61  SSPPPILPTTSNRLTLYVTTACRVDLKADNPIDKLPKIFFNEELRSRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPI-----IAPPPPPP 180
           KEELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRCSDPP+     + PPPPPP
Sbjct: 121 KEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPP 180

Query: 181 PPLAGSAELPLTSNQTAEMGSYSLQHLQLQQREGSSQSIC 213
           PPLA S ELPL SNQTAEM SYSLQH QLQQ+ GSSQSIC
Sbjct: 181 PPLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 220

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BLAST of Cla97C01G001820 vs. NCBI nr
Match: XP_022958025.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 193/219 (88.13%), Postives = 201/219 (91.78%), Query Frame = 0


Query: 1   MGLPQTP-SPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG+PQTP +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  S-PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIK 120
           S PPILPTTSN LTLYVTTAC+VDLKADNP+DKLPKI FNEELR+RDSLCCVCLGEFEIK
Sbjct: 61  SPPPILPTTSNRLTLYVTTACRVDLKADNPMDKLPKIFFNEELRSRDSLCCVCLGEFEIK 120

Query: 121 EELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPI-----IAPPPPPPP 180
           EELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRCSDPP+     + PPPPPPP
Sbjct: 121 EELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPPP 180

Query: 181 PLAGSAELPLTSNQTAEMGSYSLQHLQLQQREGSSQSIC 213
           PLA S ELPL SNQTAEM SYSLQH QLQQ+ GSSQSIC
Sbjct: 181 PLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 219

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BLAST of Cla97C01G001820 vs. ExPASy Swiss-Prot
Match: Q84TF5 (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-46
Identity = 110/175 (62.86%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPI 63
           PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL   SS SP I
Sbjct: 4   PQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL---SSPSPMI 63

Query: 64  LPTTSNTLT-LYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELL 123
           LP +S+  T  ++ + C +D+K +   DKL  + FNEEL TRDSLCCVCLGEFE+KEEL+
Sbjct: 64  LPVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFELKEELV 123

Query: 124 QVPSCKHVFHIDCMNHWLISNSTCPLCRCSV-IPTTRCS-DPPIIAPPPPPPPPL 176
           ++P CKH+FH+DC++ WL S++TCPLCR SV I +T+ S D     P  P   P+
Sbjct: 124 EMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISSTKTSVDDDNDHPDSPQTSPV 174

[Close]

BLAST of Cla97C01G001820 vs. ExPASy Swiss-Prot
Match: Q570X5 (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-24
Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 18  QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPILPTTSNTLTLYVTT 77
           +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS    +  I   + +T+ L ++ 
Sbjct: 19  ELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIPGNSLSTIELGLSK 78

Query: 78  ACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMN 137
             +         + LP + F E     DS C VCLG+++  ++L Q+P CKH FH+DC++
Sbjct: 79  ELR---------EMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 138

Query: 138 HWLISNSTCPLCRCSVIP--TTRCSDPPI 165
            WL S++TCPLCR ++IP  + +  D P+
Sbjct: 139 LWLTSHTTCPLCRLALIPSRSRQSQDDPV 158

[Close]

BLAST of Cla97C01G001820 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 61/156 (39.10%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 3   LPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASS---LSSSSSS 62
           +P+T +P +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS    
Sbjct: 11  IPETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMR 70

Query: 63  SPPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKE 122
               +PT +N  T       ++ L  D   + LP + + E    +DS C VCLG+++ +E
Sbjct: 71  GGTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEE 130

Query: 123 ELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIP 156
           +L Q+PSC H FH++C++ WL S++TCPLCR S+IP
Sbjct: 131 KLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 158

[Close]

BLAST of Cla97C01G001820 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 25  FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPILPTTSNTLTLYVTTACQVDLK 84
           FI  +PI   +I+ L+ Y+    RR S+ +   SS    +PT +N  T       ++ L 
Sbjct: 24  FIVCVPICVILIVLLVLYIM---RRNSNTNVDWSSLGGFVPTNNNLST------AELGLS 83

Query: 85  ADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLISNS 144
            D   + LP + + E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WL S++
Sbjct: 84  KDIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHT 143

Query: 145 TCPLCRCSVIP 156
           TCPLCR S+IP
Sbjct: 144 TCPLCRLSLIP 144

[Close]

BLAST of Cla97C01G001820 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-12
Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 26  IFSIPILFSIILFL-----LFYLFYLKRRASSLSSS---SSSSPPILPTTSNTLTLYVTT 85
           I  I +L S+I F+     L   +YLK++ S+LSSS   S+ +P    + +    L    
Sbjct: 53  ILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLF 112

Query: 86  ACQVDLKADNPIDKLPKIQFNEELRTRDSL-CCVCLGEFEIKEELLQVPSCKHVFHIDCM 145
                      ID LP   + E   T++   C VCL EF   ++L  +P+C H FHIDC+
Sbjct: 113 HLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172

Query: 146 NHWLISNSTCPLCR 151
           + WL+SNSTCPLCR
Sbjct: 173 DTWLLSNSTCPLCR 186

[Close]

BLAST of Cla97C01G001820 vs. ExPASy TrEMBL
Match: A0A6J1EM64 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111435669 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.9e-99
Identity = 195/216 (90.28%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  ---PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEI 120
              PPILPTTSNTLTLYVTTACQVDLKADNP+DKLPKI FNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAG 180
           KEELLQVPSCKHVFHIDCMNHWL SNSTCPLCRCSVIPTTRC DPP++  PPPPPP  AG
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPP--AG 180

Query: 181 SAELPLTSNQTAEMGSYSLQHLQL-QQREGSSQSIC 213
           S+ELPLTSNQTAEM SYSL H QL QQ+EGSSQSIC
Sbjct: 181 SSELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Cla97C01G001820 vs. ExPASy TrEMBL
Match: A0A6J1H2A4 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111459379 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.2e-97
Identity = 193/219 (88.13%), Postives = 201/219 (91.78%), Query Frame = 0


Query: 1   MGLPQTP-SPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG+PQTP +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  S-PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIK 120
           S PPILPTTSN LTLYVTTAC+VDLKADNP+DKLPKI FNEELR+RDSLCCVCLGEFEIK
Sbjct: 61  SPPPILPTTSNRLTLYVTTACRVDLKADNPMDKLPKIFFNEELRSRDSLCCVCLGEFEIK 120

Query: 121 EELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPI-----IAPPPPPPP 180
           EELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRCSDPP+     + PPPPPPP
Sbjct: 121 EELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPPP 180

Query: 181 PLAGSAELPLTSNQTAEMGSYSLQHLQLQQREGSSQSIC 213
           PLA S ELPL SNQTAEM SYSLQH QLQQ+ GSSQSIC
Sbjct: 181 PLAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 219

[Close]

BLAST of Cla97C01G001820 vs. ExPASy TrEMBL
Match: A0A6J1K5R3 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111490976 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.0e-96
Identity = 192/218 (88.07%), Postives = 200/218 (91.74%), Query Frame = 0


Query: 1   MGLPQT-PSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG+PQT  +PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTSAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  S--PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEI 120
           S  PPILPTTSN LTLYVTTAC+VDLKA+NPIDKLPKI FNEELR+RDSLCCVCLGEFEI
Sbjct: 61  SPPPPILPTTSNRLTLYVTTACRVDLKANNPIDKLPKIFFNEELRSRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPP---PPPPPP 180
           KEELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRCSDPP++ PP   PPPPPP
Sbjct: 121 KEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPPP 180

Query: 181 LAGSAELPLTSNQTAEMGSYSLQHLQLQQREGSSQSIC 213
           LA S ELPL SNQTAEM SYSLQH QLQQ+ GSSQSIC
Sbjct: 181 LAASLELPLASNQTAEMVSYSLQHPQLQQQIGSSQSIC 218

[Close]

BLAST of Cla97C01G001820 vs. ExPASy TrEMBL
Match: A0A6J1I2V6 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111469090 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.2e-94
Identity = 190/216 (87.96%), Postives = 197/216 (91.20%), Query Frame = 0


Query: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  ---PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEI 120
              PPILPTTSNTLTLYVTTACQVDLKADNP+DKLPKI FNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAG 180
           KEELLQVPSCKHVFHIDCMNHWL SNSTCPLCRCSVIPTTRC D P++  PPPPP   AG
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPS--AG 180

Query: 181 SAELPLTSNQTAEMGSYSLQHLQL-QQREGSSQSIC 213
           S+E P TS+QTAEM SYSL H QL QQ+EGSSQSIC
Sbjct: 181 SSEPPPTSDQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of Cla97C01G001820 vs. ExPASy TrEMBL
Match: A0A6J1DWP0 (probable E3 ubiquitin-protein ligase RHA4A OS=Momordica charantia OX=3673 GN=LOC111023829 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 184/212 (86.79%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MGLPQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLS SSSSS
Sbjct: 1   MGLPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSFSSSSS 60

Query: 61  PPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEE 120
           PPILPT+SN LTLYVTTACQVD KADNPI+KLPKI FNEELR RDSLCCVCLGEFEIKEE
Sbjct: 61  PPILPTSSNALTLYVTTACQVDSKADNPIEKLPKILFNEELRARDSLCCVCLGEFEIKEE 120

Query: 121 LLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPIIAPPPPPPPPLAGSAE 180
           LLQVPSCKHVFHIDCMNHWL +NSTCPLCRCSVIP  RC DPP+ AP P  P P    +E
Sbjct: 121 LLQVPSCKHVFHIDCMNHWLTTNSTCPLCRCSVIPPIRCPDPPVAAPSPTLPLP----SE 180

Query: 181 LPLTSNQTAEMGSYSLQHLQLQQREGSSQSIC 213
           LPLTSNQTAEM SYSL+H QLQQ+EGSSQSIC
Sbjct: 181 LPLTSNQTAEMVSYSLRHPQLQQQEGSSQSIC 208

[Close]

BLAST of Cla97C01G001820 vs. TAIR 10
Match: AT4G24015.1 (RING/U-box superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-47
Identity = 110/175 (62.86%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 4   PQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPI 63
           PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL   SS SP I
Sbjct: 4   PQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL---SSPSPMI 63

Query: 64  LPTTSNTLT-LYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELL 123
           LP +S+  T  ++ + C +D+K +   DKL  + FNEEL TRDSLCCVCLGEFE+KEEL+
Sbjct: 64  LPVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFELKEELV 123

Query: 124 QVPSCKHVFHIDCMNHWLISNSTCPLCRCSV-IPTTRCS-DPPIIAPPPPPPPPL 176
           ++P CKH+FH+DC++ WL S++TCPLCR SV I +T+ S D     P  P   P+
Sbjct: 124 EMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISSTKTSVDDDNDHPDSPQTSPV 174

[Close]

BLAST of Cla97C01G001820 vs. TAIR 10
Match: AT1G33480.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-25
Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 18  QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPILPTTSNTLTLYVTT 77
           +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS    +  I   + +T+ L ++ 
Sbjct: 19  ELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIPGNSLSTIELGLSK 78

Query: 78  ACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMN 137
             +         + LP + F E     DS C VCLG+++  ++L Q+P CKH FH+DC++
Sbjct: 79  ELR---------EMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 138

Query: 138 HWLISNSTCPLCRCSVIP--TTRCSDPPI 165
            WL S++TCPLCR ++IP  + +  D P+
Sbjct: 139 LWLTSHTTCPLCRLALIPSRSRQSQDDPV 158

[Close]

BLAST of Cla97C01G001820 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 61/156 (39.10%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 3   LPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASS---LSSSSSS 62
           +P+T +P +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS    
Sbjct: 11  IPETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMR 70

Query: 63  SPPILPTTSNTLTLYVTTACQVDLKADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKE 122
               +PT +N  T       ++ L  D   + LP + + E    +DS C VCLG+++ +E
Sbjct: 71  GGTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEE 130

Query: 123 ELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIP 156
           +L Q+PSC H FH++C++ WL S++TCPLCR S+IP
Sbjct: 131 KLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 158

[Close]

BLAST of Cla97C01G001820 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 25  FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSPPILPTTSNTLTLYVTTACQVDLK 84
           FI  +PI   +I+ L+ Y+    RR S+ +   SS    +PT +N  T       ++ L 
Sbjct: 24  FIVCVPICVILIVLLVLYIM---RRNSNTNVDWSSLGGFVPTNNNLST------AELGLS 83

Query: 85  ADNPIDKLPKIQFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLISNS 144
            D   + LP + + E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WL S++
Sbjct: 84  KDIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHT 143

Query: 145 TCPLCRCSVIP 156
           TCPLCR S+IP
Sbjct: 144 TCPLCRLSLIP 144

[Close]

BLAST of Cla97C01G001820 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-13
Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 26  IFSIPILFSIILFL-----LFYLFYLKRRASSLSSS---SSSSPPILPTTSNTLTLYVTT 85
           I  I +L S+I F+     L   +YLK++ S+LSSS   S+ +P    + +    L    
Sbjct: 53  ILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLF 112

Query: 86  ACQVDLKADNPIDKLPKIQFNEELRTRDSL-CCVCLGEFEIKEELLQVPSCKHVFHIDCM 145
                      ID LP   + E   T++   C VCL EF   ++L  +P+C H FHIDC+
Sbjct: 113 HLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172

Query: 146 NHWLISNSTCPLCR 151
           + WL+SNSTCPLCR
Sbjct: 173 DTWLLSNSTCPLCR 186

The following BLAST results are available for this feature:

BLAST of Cla97C01G001820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907033.1	1.5e-101	92.99	probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida]	[more]
XP_022928899.1	1.2e-98	90.28	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]
KAG6579565.1	8.8e-97	90.14	30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_023534491.1	8.8e-97	88.18	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita pepo subsp. pepo]	[more]
XP_022958025.1	1.5e-96	88.13	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]

BLAST of Cla97C01G001820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TF5	1.9e-46	62.86	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q570X5	3.5e-24	41.61	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1	[more]
Q9SN28	2.5e-22	39.10	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q9SN27	2.3e-15	37.40	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q8GW38	5.3e-12	37.31	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]

BLAST of Cla97C01G001820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM64	5.9e-99	90.28	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1H2A4	7.2e-97	88.13	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1K5R3	8.0e-96	88.07	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I2V6	1.2e-94	87.96	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1DWP0	2.2e-93	86.79	probable E3 ubiquitin-protein ligase RHA4A OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Cla97C01G001820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24015.1	1.4e-47	62.86	RING/U-box superfamily protein	[more]
AT1G33480.1	2.5e-25	41.61	RING/U-box superfamily protein	[more]
AT4G10150.1	1.8e-23	39.10	RING/U-box superfamily protein	[more]
AT4G10160.1	1.6e-16	37.40	RING/U-box superfamily protein	[more]
AT1G23980.1	3.8e-13	37.31	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 108..149 e-value: 0.002 score: 27.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 108..150 e-value: 1.8E-11 score: 44.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 108..150 score: 11.766381
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 76..155 e-value: 8.7E-17 score: 62.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..178
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 4..163
None	No IPR available	PANTHER	PTHR22765:SF187	E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED	coord: 4..163
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 89..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G001820.1	Cla97C01G001820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity