ClCG11G009855 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G009855
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr11: 16519341 .. 16519712 (+)
RNA-Seq Expression	ClCG11G009855
Synteny	ClCG11G009855

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAATTGCAACCTCAAGACGATGTGACTATTGGATTTAGGATTGCATTTGACACCAAACTAGTTGTAGCGAGTTTCATCGTCTTCATTTCATGTGACCAGTTTGTCCATATGATCTTGAAAGCCAACTTTAAACACTATCAATTCCAGAACATCATCGTTGAAAATGAAGTTCAAAGTAGAAACAAAAGTAGGAAACACGTGTGCGAGTACCAAGGCCGACAACCTGTCAGGGGTGGTCATCAAAAGCTAGTCAAGAAGATGGAATTCAAGAGAAGGTTGCTAAATGAGCTAGATAAGAAGATGGAATTCAAGAACAGGTTGCTAAATAAACGCAGACATGAGATTGAGAAGGAGAGAGAGATTTGA

mRNA sequence

ATGAAGGAATTGCAACCTCAAGACGATGTGACTATTGGATTTAGGATTGCATTTGACACCAAACTAGTTGTAGCGAGTTTCATCGTCTTCATTTCATGTGACCAGTTTGTCCATATGATCTTGAAAGCCAACTTTAAACACTATCAATTCCAGAACATCATCGTTGAAAATGAAGTTCAAAGTAGAAACAAAAGTAGGAAACACGTGTGCGAGTACCAAGGCCGACAACCTGTCAGGGGTGGTCATCAAAAGCTAGTCAAGAAGATGGAATTCAAGAGAAGGTTGCTAAATGAGCTAGATAAGAAGATGGAATTCAAGAACAGGTTGCTAAATAAACGCAGACATGAGATTGAGAAGGAGAGAGAGATTTGA

Coding sequence (CDS)

ATGAAGGAATTGCAACCTCAAGACGATGTGACTATTGGATTTAGGATTGCATTTGACACCAAACTAGTTGTAGCGAGTTTCATCGTCTTCATTTCATGTGACCAGTTTGTCCATATGATCTTGAAAGCCAACTTTAAACACTATCAATTCCAGAACATCATCGTTGAAAATGAAGTTCAAAGTAGAAACAAAAGTAGGAAACACGTGTGCGAGTACCAAGGCCGACAACCTGTCAGGGGTGGTCATCAAAAGCTAGTCAAGAAGATGGAATTCAAGAGAAGGTTGCTAAATGAGCTAGATAAGAAGATGGAATTCAAGAACAGGTTGCTAAATAAACGCAGACATGAGATTGAGAAGGAGAGAGAGATTTGA

Protein sequence

MKELQPQDDVTIGFRIAFDTKLVVASFIVFISCDQFVHMILKANFKHYQFQNIIVENEVQSRNKSRKHVCEYQGRQPVRGGHQKLVKKMEFKRRLLNELDKKMEFKNRLLNKRRHEIEKEREI

Homology

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BLAST of ClCG11G009855 vs. NCBI nr
Match: XP_038888698.1 (superoxide dismutase [Fe], chloroplastic-like [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 7.3e-11
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 15 RIAFDTKLVVASFIVFISCDQFVHMILKANFKHYQFQNIIVENEVQSRN-----KSRKHV 71
          RI FDTK  V S I F+SCDQF H ILKANFKHYQ QN+IVEN+VQSRN     + R+ V
Sbjct: 28 RITFDTKPAVGSLIAFVSCDQFAHRILKANFKHYQSQNVIVENDVQSRNMCVNDQGRRLV 87

The following BLAST results are available for this feature:

BLAST of ClCG11G009855 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888698.1	7.3e-11	65.57	superoxide dismutase [Fe], chloroplastic-like [Benincasa hispida]	[more]

BLAST of ClCG11G009855 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G009855 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G009855 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..102
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..33 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G009855.1	ClCG11G009855.1	mRNA