ClCG11G008650 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G008650
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description50S ribosomal protein L18-like
LocationCG_Chr11: 12577251 .. 12579110 (-)
RNA-Seq ExpressionClCG11G008650
SyntenyClCG11G008650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGGTACAATTTCTTCACTCCCATCATACTCGATTCTCTATCTATTCCGGAGGATATCTTATTTACATTTTCAAGTTTATGATTTATCGATTGTTGACCACGAATTTCTCTATTGTTATTGTTCACTTTTGTTGGGAGAAGCAGAATTATTTGTGAGGCAGTTTAATCTGTGGTGGGTTTGCTGCTAGTAGTCAATAGTAAAGGAGAGATAAATAATTCAGGATAATTTTTCAGGATATGGTTTGAGAATTTGAAAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTTCCACATCTTTCAGATACTTCCGTTTCGACCTTCTATTTTAGTTGGGTGTGAAATTGAGGACAGAGCTTAGAAATTCGTGAGATAAATGGCCACAACGTTTTGAACCCATGACCACACGGTGAGAAGTTTCCTCTACGTTAACATCCTTGGACTCAGCTAGGTATATTAACAATTTTCCGACTTGAAATGTGGAATATTCAGGAAGATTTCCACTGAACCAAGAATAATACTTGCCTTTTTGAAGAAGAGGAAGAGATAACCCCCTTTTGGTGGCAATGTTATCATTGTTACACGTGGCTTTCGTGGTGGTTATTTTCCTTGGTTTGTATCATATTATTGTTTCAAAAGTTTGTTGCTAGCTGTCAAGCTTGGATTCAGGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGTGCTCACTGATTCTCCTATTGAAAATGCCTTGCTCATTTAAATTTTAGTTGCTATTTTGGCAAGGTCGATAATTTTAGTTGCTGATATTCATCTCTTGGATGTTCATGTAGAGAGTGAGGGAAATATGGCATAGGGCAAGATAGATAGGCTTTGGAGTCAACGTCAGAAGGAAGAGCAATTATGGCGGTGGAATGTTTAGTACCGGGACGGAAAATAGTTTTTAAGGTGGAAGAGGGTGGCACACAGCTAATGTTGATATTTGAGAAAGATCTCGGATTGTGATTGGTTGGTTGATCCAATGATGGAGAAGGGTAAGGGTCTTTCAAAGAGGGCGGATCATAGTTGTTGGTGAAGGCTGGGGAAGAAGCCATGTTGTTAATGGTTGGGTAACCTGTGGGTGGTGAGGGGGTAGGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

mRNA sequence

ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

Coding sequence (CDS)

ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

Protein sequence

MMAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAKNTACSHFCENSRAVIMAGEDRNDCSMVYRVLNYFLLRSRSIDFIAIVEQCPSLKLLPGPVIMGLASHMDDRICAKLQPLAFLPFEARDMIEQGKQDGLWRLVVKKKEGKGSLDAGAGELLDSDGRDDEDEAVVFCRGDERGGGVGGLTKGEVWLSGGLKVEEGKELLGGEGVGGRRDVVYGKEK
Homology
[Close]
BLAST of ClCG11G008650 vs. NCBI nr
Match: XP_022993255.1 (uncharacterized protein LOC111489327 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-14
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAK 63
          AH K
Sbjct: 61 AHDK 64

[Close]
BLAST of ClCG11G008650 vs. NCBI nr
Match: XP_008441144.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-12
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 58

Query: 62 K 63
          K
Sbjct: 61 K 58

[Close]
BLAST of ClCG11G008650 vs. NCBI nr
Match: XP_023550056.1 (uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-11
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 2  MAFTAISSSLP--SCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASS 61
          MAFTAISSSLP  S SSVPS++SFQ PS+P    QKSSSLSW+SSFPH++ISRGSP  SS
Sbjct: 1  MAFTAISSSLPSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

Query: 62 NPAHAK 63
          NPAH K
Sbjct: 61 NPAHDK 66

[Close]
BLAST of ClCG11G008650 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-11
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTAISSS+PS +SV S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAK 63
          AHAK
Sbjct: 61 AHAK 64

[Close]
BLAST of ClCG11G008650 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-11
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNP
Sbjct: 7  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 62 AHAK 63
          AHAK
Sbjct: 67 AHAK 70

[Close]
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-15
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAK 63
          AH K
Sbjct: 61 AHDK 64

[Close]
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match: A0A1S3B2Q8 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-13
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 58

Query: 62 K 63
          K
Sbjct: 61 K 58

[Close]
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL--QKSSSLSWSSSFPHLSISRGSPFASSNPA 61
          MAFTAISSS+PS +SV S+LS Q  STP   QKSSSLSW+SSFP +S+SRGSPF SSNPA
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPQKSSSLSWASSFPSISLSRGSPFVSSNPA 60

Query: 62 HAK 63
          HAK
Sbjct: 61 HAK 63

[Close]
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNP
Sbjct: 7  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 62 AHAK 63
          AHAK
Sbjct: 67 AHAK 70

[Close]
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTAISSS+PS + V S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNP
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAK 63
          AHAK
Sbjct: 61 AHAK 64

The following BLAST results are available for this feature:
BLAST of ClCG11G008650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022993255.11.3e-1479.69uncharacterized protein LOC111489327 [Cucurbita maxima][more]
XP_008441144.11.6e-1278.69PREDICTED: 50S ribosomal protein L18-like [Cucumis melo][more]
XP_023550056.11.7e-1174.24uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo][more]
XP_023521951.11.7e-1173.44uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo][more]
XP_022152485.16.5e-1171.88uncharacterized protein LOC111020202 [Momordica charantia][more]
BLAST of ClCG11G008650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JY306.2e-1579.69uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327... [more]
A0A1S3B2Q87.5e-1378.6950S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1[more]
A0A6J1JHY73.2e-1174.60uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153... [more]
A0A6J1DE203.2e-1171.88uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1HH864.1e-1171.88uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640... [more]
BLAST of ClCG11G008650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G008650.1ClCG11G008650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome