ClCG11G006120 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G006120
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPolyprotein
LocationCG_Chr11: 6644515 .. 6645028 (-)
RNA-Seq ExpressionClCG11G006120
SyntenyClCG11G006120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAATGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAAGTTTCTAGGAATATTAATATGATAATAAAAGTCGAGGAACCTTTTTAAAAAAATTCTTCCTATTTGAACCTACAACACTAATATGAAGAATCATTACCTAACACCATCTCCTCCAAACCTTGGATGATGATTTCAAGCCAGACCAGCATACTTATGATGTAACTTATGTCATTAGCTAGCAACAGCTTATGTTCTAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGCAACCCATAA

mRNA sequence

ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAATGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAACTAGCAACAGCTTATGTTCTAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGCAACCCATAA

Coding sequence (CDS)

ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAATGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAACTAGCAACAGCTTATGTTCTAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGCAACCCATAA

Protein sequence

MDQQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGNP
Homology
[Close]
BLAST of ClCG11G006120 vs. NCBI nr
Match: TYK19619.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-13
Identity = 56/168 (33.33%), Postives = 69/168 (41.07%), Query Frame = 0 

Query: 13  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE----- 72
           P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE     
Sbjct: 176 PEIPHADPNQPIFQPNSFDIGKLKDDPSDILSEINKRLAYFSINKDSEVTSLSIEKDKLV 235

Query: 73  ------------------------------------------------------------ 111
                                                                       
Sbjct: 236 STNKNHYSQPSPSDLGWDDLHHERHSYDRTCLVTWNIDGYSEAQMMNMFQEMLLAASAYS 295

[Close]
BLAST of ClCG11G006120 vs. NCBI nr
Match: KAA0041640.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-13
Identity = 56/168 (33.33%), Postives = 69/168 (41.07%), Query Frame = 0 

Query: 13  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE----- 72
           P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE     
Sbjct: 58  PEIPHADPNQPIFQPNSFDIGKLKDDPSDILSEINKRLAYFSINKDSEVTSLSIEKDKLV 117

Query: 73  ------------------------------------------------------------ 111
                                                                       
Sbjct: 118 STNKNHYSQPSPSDLGWDDLHHERHSYDRTCLVTWNIDGYSEAQMMNMFQEMLLAASAYS 177

[Close]
BLAST of ClCG11G006120 vs. NCBI nr
Match: KAA0054117.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK29407.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 9.6e-10
Identity = 51/169 (30.18%), Postives = 68/169 (40.24%), Query Frame = 0 

Query: 8   LKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDK---------- 67
           LK   P +P+I+P +PI QPN+  IG LK D    L EINK+LA    +K          
Sbjct: 141 LKNKNPEIPQINPNQPIFQPNSFNIGRLKEDAVEYLAEINKRLAAISLNKESKTATEGQE 200

Query: 68  ------------PEAEASKKIELA------------------------------------ 112
                       P+   SK + +A                                    
Sbjct: 201 AKGINMIKKDSLPQTSTSKILPIAQWIDMKNHYSQPSPSDLGWDDLHHEKWTYDAAMTYS 260

[Close]
BLAST of ClCG11G006120 vs. NCBI nr
Match: KAA0039552.1 (Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa] >TYK01747.1 Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 44/133 (33.08%), Postives = 62/133 (46.62%), Query Frame = 0 

Query: 3   QQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEA 62
           Q+KT+      GLP++DP +PI+QPN+L I +  +    L +E+ +KL+     K     
Sbjct: 135 QEKTLAPPKRLGLPRVDPNRPIVQPNSLDIKLKGSSTNELFEELTRKLSETSISKEHVGT 194

Query: 63  SKKIEL-------------ATAYV-----------LIFEFTGNLQSWWHNQLTDHDRNVI 112
           S K E+             AT+Y+           L   F GNL+SWWHN LTD +R  I
Sbjct: 195 SSKKEIRQMMIIFQEMFVAATSYLRRMSQREIVDALTVGFKGNLRSWWHNHLTDANREAI 254

[Close]
BLAST of ClCG11G006120 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-09
Identity = 51/188 (27.13%), Postives = 69/188 (36.70%), Query Frame = 0 

Query: 15  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE--------------- 74
           +P +DP +PI QPN+  IG LK DP  L  +IN++L++   +K +               
Sbjct: 57  IPPVDPRQPIFQPNSFKIGPLKEDPSDLFAKINRRLSSLSLNKRDSSQKNEVAKSINVVA 116

Query: 75  ------------------------------------------------------------ 112
                                                                       
Sbjct: 117 TIPTITQASSSTILLVTMHTEVKNHYPRPSPPDMGWDDLRHDQRTYDESSIITWNIDGYS 176

[Close]
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match: A0A5A7TEB7 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001160 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 56/168 (33.33%), Postives = 69/168 (41.07%), Query Frame = 0 

Query: 13  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE----- 72
           P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE     
Sbjct: 58  PEIPHADPNQPIFQPNSFDIGKLKDDPSDILSEINKRLAYFSINKDSEVTSLSIEKDKLV 117

Query: 73  ------------------------------------------------------------ 111
                                                                       
Sbjct: 118 STNKNHYSQPSPSDLGWDDLHHERHSYDRTCLVTWNIDGYSEAQMMNMFQEMLLAASAYS 177

[Close]
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match: A0A5D3D7T3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00050 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 56/168 (33.33%), Postives = 69/168 (41.07%), Query Frame = 0 

Query: 13  PGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIE----- 72
           P +P  DP +PI QPN+  IG LK+DP  +L EINK+LA F  +K     S  IE     
Sbjct: 176 PEIPHADPNQPIFQPNSFDIGKLKDDPSDILSEINKRLAYFSINKDSEVTSLSIEKDKLV 235

Query: 73  ------------------------------------------------------------ 111
                                                                       
Sbjct: 236 STNKNHYSQPSPSDLGWDDLHHERHSYDRTCLVTWNIDGYSEAQMMNMFQEMLLAASAYS 295

[Close]
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match: A0A5D3DZV1 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277G00290 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 51/169 (30.18%), Postives = 68/169 (40.24%), Query Frame = 0 

Query: 8   LKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDK---------- 67
           LK   P +P+I+P +PI QPN+  IG LK D    L EINK+LA    +K          
Sbjct: 141 LKNKNPEIPQINPNQPIFQPNSFNIGRLKEDAVEYLAEINKRLAAISLNKESKTATEGQE 200

Query: 68  ------------PEAEASKKIELA------------------------------------ 112
                       P+   SK + +A                                    
Sbjct: 201 AKGINMIKKDSLPQTSTSKILPIAQWIDMKNHYSQPSPSDLGWDDLHHEKWTYDAAMTYS 260

[Close]
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match: A0A5A7T7W5 (Peptidase_A3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00770 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 44/133 (33.08%), Postives = 62/133 (46.62%), Query Frame = 0 

Query: 3   QQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEA 62
           Q+KT+      GLP++DP +PI+QPN+L I +  +    L +E+ +KL+     K     
Sbjct: 135 QEKTLAPPKRLGLPRVDPNRPIVQPNSLDIKLKGSSTNELFEELTRKLSETSISKEHVGT 194

Query: 63  SKKIEL-------------ATAYV-----------LIFEFTGNLQSWWHNQLTDHDRNVI 112
           S K E+             AT+Y+           L   F GNL+SWWHN LTD +R  I
Sbjct: 195 SSKKEIRQMMIIFQEMFVAATSYLRRMSQREIVDALTVGFKGNLRSWWHNHLTDANREAI 254

[Close]
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match: A0A6J1DFI7 (uncharacterized protein LOC111019629 OS=Momordica charantia OX=3673 GN=LOC111019629 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.9e-09
Identity = 51/188 (27.13%), Postives = 69/188 (36.70%), Query Frame = 0 

Query: 15  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE--------------- 74
           +P +DP +PI QPN+  IG LK DP  L  +IN++L++   +K +               
Sbjct: 57  IPPVDPRQPIFQPNSFKIGPLKEDPSDLFAKINRRLSSLSLNKRDSSQKNEVAKSINVVA 116

Query: 75  ------------------------------------------------------------ 112
                                                                       
Sbjct: 117 TIPTITQASSSTILLVTMHTEVKNHYPRPSPPDMGWDDLRHDQRTYDESSIITWNIDGYS 176

The following BLAST results are available for this feature:
BLAST of ClCG11G006120 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK19619.17.1e-1333.33polyprotein [Cucumis melo var. makuwa][more]
KAA0041640.17.1e-1333.33polyprotein [Cucumis melo var. makuwa][more]
KAA0054117.19.6e-1030.18Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK29407.1 Enzymatic polyprote... [more]
KAA0039552.14.8e-0933.08Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa] >TYK01747.1 Pe... [more]
XP_022151716.18.1e-0927.13uncharacterized protein LOC111019629 [Momordica charantia][more]
BLAST of ClCG11G006120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TEB73.4e-1333.33Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001160 PE... [more]
A0A5D3D7T33.4e-1333.33Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00050 PE... [more]
A0A5D3DZV14.6e-1030.18Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22... [more]
A0A5A7T7W52.3e-0933.08Peptidase_A3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1DFI73.9e-0927.13uncharacterized protein LOC111019629 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of ClCG11G006120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G006120.1ClCG11G006120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding