ClCG11G004730 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G004730
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr11: 5081735 .. 5086708 (+)
RNA-Seq ExpressionClCG11G004730
SyntenyClCG11G004730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGCATGGAGATTGTTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGTCCAATGGAATTTCCGAGTCGGTTGCTTGCTAACAGTGGGCCGATTGGGAGAATGTGAGGAGCCAAGCTGAGAATTCCTACCTCAAGGTCATAAACTGTATTGCATATAACCCAATCTGCCACTTCCACTGCTCTGTTGTTCCTTAAGCAAGCTTGAAATAGGATTTTCTTTGTCTCTTCGTCGGCAAAACATGCCCAGGGCAAACTTTCCGTTCTGGCTGTAGGTACTGATGGCGCTAACTTAATCTCCTCGCTTTTCAGTAAAGTTCCTGTTGATATTTGAAACTAATTAACTATTAGACTACTAATCTTAAAGCATCTTGACCAAATTCTGTTTTTGATATTGTTTCAAATTATTTTTTTGGCTAAGAAAGTGAATTTATTTGATTTTGCTGCCTAGTTTAATCTCATAGGTAAGATTTAAGTAAATAAAGCATTGAGTTTAACATAAGATTTTGTGTGAACAAAACAATTTATTGTGAGGTTGACTAAGAGTGTGTTTGGAATACATTGTTTAATTTAAAAAATAAGTCATTTTGAAAAAATTTAGAGTGTTCGGCAACCACTTAAAAGAGCTTTTGAGTTATATTTTAAACAATTTTTGAAAAAAACTTTTTTCTCTAGTCTATCCAAACGGGCCTAACTTGATAAAAAAAAAAACTATTGGTGTTAATCTTACCATCAAAATCAATTAGCTTCTCTTGAATCAGTTTTGGGATACTGAATAACATAGCCAACAATGCAGCTGCTGCTGGGAAGAAGGCGGCTCGTCGGATTCTCATCTTTGCAGCAACTTCCAGAGCCCACCCAAGACTTTCATCAGCAATAACACTCGTAATTTCATTGCCACCCAATCCATTGATTGTATTTATCAGCTCTTCAAGCTTCATGGGCATGACATCCAACATTGTGCCAGTTAATTTACCAAGATCATTTCTATCCGCTCCAGGTTCCATGCCATCTGTGAGTGAAACTAGGTGAATATTAGCATCCCCTATATGATCTGTTTCTGCTAGAGCATTCATTACACGTTTGTGATTGTGCTCTGTGTTCACGAACGTGATTTCAAACCCTTGTTCGGCTAAGTGCAGAGAGAATTCTAACAGGGGGATCACATGGCCTTGTGCTGGATAAGGTATGGCTAATATGTGCCCGCTACCCATTTCTCTTCTGTAATTTAGGATTTAATTCAATTGATTGTTGCTCCTGAGCTTCAATTTATCACTATATATACAACACACATCACAAGCAAAATGATTAGGGGAGGAATCTTCTTCTCTTTACTCTCTAAGCCATTGGCCTTGTCATTTTATAATGTGACACTAACCTAACTTTGGTTATATCTAGCTCCTAATTGTTAATTGTTCTGTGTCTTTGTCTTCACCTTCTTCTGGTATTAATTATATTCAATTTGTCTTGGCTTGTTATTGGGAACTTTTCTTAATATTCCATTCTTTTTTTTTTCTCTTCATTTTCTTGGCTTTATATGCTATGATATTTGAAATTTAAGCTGGCTTAGAGTTCCTTTAAATAAATGCGACAGAACTTCACAGGAGTGATGTTACTTCTCAATAGATTATACCAATCCTCCCAGGAGAAACTTTCAAGATTGAACTATACAACTTTTAGGTTACTAAAATTATAACTTAGAACTGTGTGTCACAGTGGCAAGCAATTGTGTTGTAGATTTGTATGCTTGTGAACGTCTTATTGTTGTCAAAGTGTGAATAGCTTAACATGCATAAAGGGTACCTGGCCAAAATGCCTGAAGTTTGAATTCTCTTCTCCCATGTTCAACTCAAAAACAAAAAAAGGAAAAAAAGAAAAAGAAAAAAAGGAAAAAAAGGTCTTAATTGACGTTTTGTATTCGGTGACCGTGATTCCTTTTTAGATGATGCTTGTAGTAGTAGACACCTTTTCTATATTTATATGTCGTCCTTTTGAATTGTTATATTGTTTCTGCAATAAATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGTGACATCTTTAATAATATTTTAAGATGGATTACATCACGATGAGGATGTAAATGTTATGCCAGTCTAGTTGAATTATTGGGTGCATGGACTAATTCTGATTTTTGTTACTGGTTTTATTTATCAATTGAATTGAAAGAATTTAATAGAAAGAAATTAGGTAGACTTTGATTCCAGGGAAGTCTTCACTATGTACTCGTTATTATTATTTTTAAACAGCATCTTAAAAGTTTAGTAAAGATGAAATGAAATTAGAGGTTTTTTAGATATGTTTAAAAAATAGTTTGACTTTTGATAAATAGAAAAAAAATTATATATTTAATGTGGAAATTTTGTTTGTTAAGACAATTATAAAAAAAAATGATTTTGTTGTGTAGTTTTGAGTTAGGTAGTTCATTCCATCTATTAATTAATGGAAAACAGAATAAAGACATTGTTCAAAATGGTTGTTATTTTTAAGCTGTTGAAAATAAAACGGACATGTCAAAATTTTAACGATAAAAATGAGATATTTAGAACTTCAAGAACTAAAATAAAATTTTTGAAGTGGTTGCTTATGGAAGACTGCAAAGCTTTTAATTTGTAGTGTTTGTTTATTTATTTATTACAATATTTAGGAGAACAATCAAACCTCAAACTTTGATGTCAATAGGACAAGTTCATGTTTGTTGAGTTATGTTTATGTTGGTTTGATTAAATTATTAGATAATATGTCAACGAATGTTAACTACATTTTACATTAATAGGATTAAAGAACTTAAACCCTTATTTTTCTAAATAAAAAAAACTTGTACACGATAAATATAAAATATAAGATTTAAAGTTGGGCAAATTTTACTTTTAGTTTCTATGGTTTATGGGTGATGTCTAGTTAGCCCATGAAGTTTCAAAAGTAAAAGCAAGAAAATAAAAGGTGAGAAAATCAACTTATGAAGTAGAGGGCATATTGGAGAGGAGGATAGCTTTTGATCAATATCTTAAACGATCTTTTAACTTTTAGTTCAATTTTCAAATTTATTTGTTAATTAATCAAACAAAATCAACATGTAAGTTAAGTCTAATTACCATTCCATTAGGTTAAAGTTATCATGGATCATTTAGAGTTGTTATACAAACTTGATGATCAACGTCCTCATTTTGAACTAAAAAGACATCAACCAACCATCATAGGTTGGCATAGTGGTAAAAAGGAGACAGTCTATTTCTTATGAGTTTCCTTAATTGCGTAAGCTGGCTCGGACATTAACGGATATAAAACAAGGAAACTAAAAAGACATCAACCCCAATCTTTAAGGATCACACAAACATTTTGCTAAAAAAATGTTTTAAAATGTATGTGTATGGTAAACAAATCGAACTTTAAACTTTGAAGTTGATATAATAAGTAGCTAGTTGAGCTACGCTCGTGTTAGTTGAGATGATAGCTGAGATGATGATATTTATAGGTGGAGAATTTTATGTTTAGCAACAAACATATAGTAGTTCCTTTATTGATAATAAATTAAACTATGTTATGGTTTCAACCATTTTATGAAATTGTTGAAGTTATTATAAGATCGACCGCCTTCTTCCACACTCTCCAGGACTGTTTTCTTCAATTTTTGAATTCTCTGTTTCAAATCCTCATCTCCGAGGAGCTTCTCCACCTTTTCTTCAATCTCTGTTCTTGTAACGATTCCATGTTGGTCTTTCTTCAATTCTAACCCCACCTTCCATATATCACAAATGTAGCTCTCATTAAGAAATTGGTCGGCGAAGTACGGCCAACACAGGAATCGGACGCCATTGCTGAGGCTTTCAAGGGTCGAATTCCACCCACAGTGGCTCAGAAAGCAAGCGATCGAGGGATGATTAAGAACCCTCTGTTGAGGAGCCCAACCCACAATCTTCCCACGGGATTCTACCCTCTCTTGAAACCCTAACGGGAAAACATTGTCAGGGTTTTCTTCAGTAATGTCTGGCCTCACCACCCAGAGAAATGGCTTGCCTGTAAGCTCAAGCCCTAGGGCTAATTCCTGGAATTGAGTTTTTTCTAGAACAGTGAAGCTTCCAAATGCAACGTAAATGACTGAGCATGGAGATTGTTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGTCCAATGGAATTTTCGAGTCGATTGCTTGCTAAAAGTGGGCCAATTGGGAGAATGCGAGGAGCTAAGCTGAAGATTTCTCTTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTGTTATTTTTTAAGCAAACTTGAAATAGAATTTTCTCTGTCTCTTTGTCGCCAACACATGCCCAAACCAATCTTTCCGTTCTGGTTGTGGGTACTGTTGCTGCTAACTTGATCTCCTCGCTTTTTAGTAAGGTTCCTGTTGATATTGAAACTATTTAACAACTGCTAATCTTGAAGCGTTATGAGCAAATTCTATGTTGCTATTGTGCCTATTGATTAGATTGTTTAAAATTCTTTATGTGGCTAATAAGGTGAATTTGTTTGTTTGTCTTGCCTAGTTTGATACTCTGATCTCATAACTAAGATTTAAGTCAATGAAAGACTGAGTTTGACATATGATTGATTTTGTCTGAATAAAAAAACTCGTTGGATGGACTCATTAGCTTTGATTAAGCTACAATTGAAACCCATCTTACCATCAGAATCAATCAGTTTTTCTTCAATAAGCTTTGGGATGCTAAATTGCATAGCCAGCAATGCAGCAGCCGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACCA

mRNA sequence

ATGACTGAGCATGGAGATTGTTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGTCCAATGGAATTTCCGAGTCGGTTGCTTGCTAACAGTGGGCCGATTGGGAGAATGATTTTCTTTGTCTCTTCGTCGGCAAAACATGCCCAGGGCAAACTTTCCGTTCTGGCTGTAGGTACTGATGGCGCTAACTTAATCTCCTCGCTTTTCACCAACAATGCAGCTGCTGCTGGGAAGAAGGCGGCTCGTCGGATTCTCATCTTTGCAGCAACTTCCAGAGCCCACCCAAGACTTTCATCAGCAATAACACTCGTAATTTCATTGCCACCCAATCCATTGATTGTATTTATCAGCTCTTCAAGCTTCATGGGCATGACATCCAACATTGTGCCAGTTAATTTACCAAGATCATTTCTATCCGCTCCAGGTTCCATGCCATCTGTGAGTGAAACTAGGCAAGTTGAATCTTCTGGCCAGAAGTGTCCAATGGAATTTTCGAGTCGATTGCTTGCTAAAAGTGGGCCAATTGGGAGAATGCGAGGAGCTAAGCTGAAGATTTCTCTTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTAATTTTCTCTGTCTCTTTGTCGCCAACACATGCCCAAACCAATCTTTCCGTTCTGGTTGTGGGTACTGTTGCTGCTAACTTGATCTCCTCGCTTTTTAGTAAGCTACAATTGAAACCCATCTTACCATCAGAATCAATCAGTTTTTCTTCAATAAGCTTTGGGATGCTAAATTGCATAGCCAGCAATGCAGCAGCCGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACCA

Coding sequence (CDS)

ATGACTGAGCATGGAGATTGTTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGTCCAATGGAATTTCCGAGTCGGTTGCTTGCTAACAGTGGGCCGATTGGGAGAATGATTTTCTTTGTCTCTTCGTCGGCAAAACATGCCCAGGGCAAACTTTCCGTTCTGGCTGTAGGTACTGATGGCGCTAACTTAATCTCCTCGCTTTTCACCAACAATGCAGCTGCTGCTGGGAAGAAGGCGGCTCGTCGGATTCTCATCTTTGCAGCAACTTCCAGAGCCCACCCAAGACTTTCATCAGCAATAACACTCGTAATTTCATTGCCACCCAATCCATTGATTGTATTTATCAGCTCTTCAAGCTTCATGGGCATGACATCCAACATTGTGCCAGTTAATTTACCAAGATCATTTCTATCCGCTCCAGGTTCCATGCCATCTGTGAGTGAAACTAGGCAAGTTGAATCTTCTGGCCAGAAGTGTCCAATGGAATTTTCGAGTCGATTGCTTGCTAAAAGTGGGCCAATTGGGAGAATGCGAGGAGCTAAGCTGAAGATTTCTCTTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTAATTTTCTCTGTCTCTTTGTCGCCAACACATGCCCAAACCAATCTTTCCGTTCTGGTTGTGGGTACTGTTGCTGCTAACTTGATCTCCTCGCTTTTTAGTAAGCTACAATTGAAACCCATCTTACCATCAGAATCAATCAGTTTTTCTTCAATAAGCTTTGGGATGCTAAATTGCATAGCCAGCAATGCAGCAGCCGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACCA

Protein sequence

MTEHGDCWSSHFRQVESSGQKCPMEFPSRLLANSGPIGRMIFFVSSSAKHAQGKLSVLAVGTDGANLISSLFTNNAAAAGKKAARRILIFAATSRAHPRLSSAITLVISLPPNPLIVFISSSSFMGMTSNIVPVNLPRSFLSAPGSMPSVSETRQVESSGQKCPMEFSSRLLAKSGPIGRMRGAKLKISLSRSYTVLQITQSATSTALIFSVSLSPTHAQTNLSVLVVGTVAANLISSLFSKLQLKPILPSESISFSSISFGMLNCIASNAAAAGQKATRRILIFSATSRAHPRFSSAITP
Homology
[Close]
BLAST of ClCG11G004730 vs. NCBI nr
Match: KAA8517955.1 (hypothetical protein F0562_015429 [Nyssa sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 7.3e-04
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 76  AAAAGKKAARRILIFAATSRAHPRLSSAITLVISLPPNPLIVFISSSSFMGMTSNIVPVN 135
           AAAAG+KAAR I IF+ATS+A   LSSAI  +I   P+PLI  +SSSSF GMT  I   N
Sbjct: 15  AAAAGQKAARLIPIFSATSKAQLILSSAIMQLILSLPDPLIFSMSSSSFPGMTWKIASDN 74

Query: 136 LPR 139
            PR
Sbjct: 75  FPR 77

[Close]
BLAST of ClCG11G004730 vs. NCBI nr
Match: CAB3498142.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 55.8 bits (133), Expect = 7.3e-04
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 0 

Query: 2   TEHGDCWSSHFRQVESSGQKCPMEFPS-RLLANSGPIGRMIFFVSSSAKHAQ-GKLSVLA 61
           TE     SSH R + SSG+ CP  F S R   N GP+GRM  + S++   A   +L ++ 
Sbjct: 172 TERSGWASSHSRHLVSSGKNCPTGFLSCRSSVNRGPMGRMFGYSSNAPGSASTNELQIMF 231

Query: 62  VGTDGANLI---SSLFTNNAAAAGKKAARRILIFAATSRAHPRLSSAITLVISLPPNPLI 121
                A+L+   S      AA  G+K A  +  F ATS A P  SSA++ +I +PP+  I
Sbjct: 232 SARSFASLLRITSWKMARKAADPGQKQADLMPSFLATSNAQPMASSAMSQLIFVPPDASI 291

Query: 122 VFISSS 123
           +  SSS
Sbjct: 292 LSTSSS 297

[Close]
BLAST of ClCG11G004730 vs. ExPASy TrEMBL
Match: A0A0A0KSG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638450 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.9e-40
Identity = 105/156 (67.31%), Postives = 116/156 (74.36%), Query Frame = 0 

Query: 154 RQVESSGQKCPMEFSSRLLAKSGPIGRMRGAKLKISLSRSYTVLQITQSATSTALIFSVS 213
           RQVESSGQKCP+EFSSR LAKSGPIGR+RGAKLKIS SR+                FSVS
Sbjct: 7   RQVESSGQKCPIEFSSRFLAKSGPIGRIRGAKLKISASRN----------------FSVS 66

Query: 214 LSPTHAQTNLSVLVVGTVAANLISSLFS------------KLQLKPILPSESISFSSISF 273
           LSP HAQTN SVLV+GT +ANL+SSLFS            K+QLKP LPSESISF SI F
Sbjct: 67  LSPIHAQTNFSVLVMGTDSANLMSSLFSKKTCWMDSSTLIKIQLKPFLPSESISFCSIKF 126

Query: 274 GMLNCIASNAAAAGQKATRRILIFSATSRAHPRFSS 298
           GMLN IA+NAAAAGQKATR I IF+ATS+AHPRF +
Sbjct: 127 GMLNSIANNAAAAGQKATRGIFIFAATSKAHPRFQA 146

[Close]
BLAST of ClCG11G004730 vs. ExPASy TrEMBL
Match: A0A0A0KVT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638460 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-15
Identity = 86/230 (37.39%), Postives = 101/230 (43.91%), Query Frame = 0 

Query: 68  ISSLFTNNAAAAGKKAARRILIFAATSRAHPRLSSAITLVISLPPNPLIVFISSSSFMGM 127
           + S FT +   AG+K  RRIL+  ATSRAHPRLSSAITL+                    
Sbjct: 14  MESFFTTD---AGEKPTRRILVVTATSRAHPRLSSAITLLFK------------------ 73

Query: 128 TSNIVPVNLPRSFLSAPGSMPSVSETRQVESSGQKCPMEFSSRLLAKSGPIGRMRGAKLK 187
                        L A GSM SV ET              ++R+LA              
Sbjct: 74  -------------LHAHGSMSSVIETS-------------TARILA-------------- 133

Query: 188 ISLSRSYTVLQITQSATSTALIFSVSLSPTHAQTNLSVLVVGTVAANLISSLFSKLQLKP 247
                            S  L+        H+ T +                  K QLKP
Sbjct: 134 ---------------GGSHGLVLDKKTCWMHSSTPI------------------KKQLKP 149

Query: 248 ILPSESISFSSISFGMLNCIASNAAAAGQKATRRILIFSATSRAHPRFSS 298
            LPSESISF SI FGMLNCIA+NAAAAGQKATR I IF+ATS+AHPRF +
Sbjct: 194 FLPSESISFCSIKFGMLNCIANNAAAAGQKATRGIFIFAATSKAHPRFQA 149

[Close]
BLAST of ClCG11G004730 vs. ExPASy TrEMBL
Match: A0A5J4ZHD2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015429 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 76  AAAAGKKAARRILIFAATSRAHPRLSSAITLVISLPPNPLIVFISSSSFMGMTSNIVPVN 135
           AAAAG+KAAR I IF+ATS+A   LSSAI  +I   P+PLI  +SSSSF GMT  I   N
Sbjct: 15  AAAAGQKAARLIPIFSATSKAQLILSSAIMQLILSLPDPLIFSMSSSSFPGMTWKIASDN 74

Query: 136 LPR 139
            PR
Sbjct: 75  FPR 77

The following BLAST results are available for this feature:
BLAST of ClCG11G004730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA8517955.17.3e-0460.32hypothetical protein F0562_015429 [Nyssa sinensis][more]
CAB3498142.17.3e-0437.30unnamed protein product [Digitaria exilis][more]
BLAST of ClCG11G004730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G004730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSG18.9e-4067.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638450 PE=4 SV=1[more]
A0A0A0KVT12.6e-1537.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638460 PE=4 SV=1[more]
A0A5J4ZHD23.5e-0460.32Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015429 PE=4 SV=1[more]
BLAST of ClCG11G004730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G004730.1ClCG11G004730.1mRNA