ClCG11G002950 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G002950
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Alba domain-containing protein
Location	CG_Chr11: 3095273 .. 3097517 (+)
RNA-Seq Expression	ClCG11G002950
Synteny	ClCG11G002950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGGTATTATTGTACTTTTGCATACACATAAAATGAAGAAAATGCTTAACAAAAGAAGTAATAGAAAATCAGAGTTTATAATAAGTCTTCCTTCGACCTCCAATAACCCGAGAAGCTAGGGTTTTGAGTTGGAGTTTTTCTAGGGTTTTTGCGAGGTTGAGGAAGAGCTTCATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAACTTGAGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTATGTCAATCTCGCTAAGGTTTGCTATTTCCCAATGTTTTGATTCCATTTACTATTTTGAGGGTTTTTGTTTTCTAAGTGATTACTGTATCCAGTTTAATTGTTAATTATGTCTTGTGTTTCTGATTTTTGTTTTCGGTTTTCAATGTAGAGGTACATGCAGCAGCATGATGAGGTTGAACTTTCTGCTCTGGGAATGGGTAATTTTGCTGCTTTATGCTTTCATTTTGTTCTTTAAGTACTTTTCCCGACTTTAAATCATGAACCCCAGAAGAAATGGGACTGTGTAATTGTATTTGATTTGAAGTCTGCCTTAAAAGGACTTTAAATGCTGAGTTCTGGGACAATCAGTTAAAGTGAAATAATGTGGCGTTTTTGGGTAGCTTATATTCAACCTTGGCCTGAGCAGTTTGCAATTCGTTTGTTTCCTTTCTTGTTGCCAATGGCCATTTGACTATCTTAGTCCTCCTTGGATCTGACGACCTTAATACTGTTCATCTCACTAATTGGATTCTATGCCACAGTATAAGGATTAACATTAACAATGCAAGTGAAATTGTTTCTTTTGTATCTCTTTGGATATTATAGTCATCAGTAAAATTGTTTTTTATCCAAAACTAATAATAATTAACAATGATGAAAAACATTTGGATGACTGGGGGGACTTGAGTATAATTGGAACTAAATGGACCGTGAATGATGTTTTGGAAAAGTTTGGTAGATATATACTAATATTATCTTTGTTGATATCAAGTTTTTGGATGATTGATATTCACATTGTCTTAAGAATGAGGCCGACAGGTTGGTTTTAAGAAATTTGGTTGAAGATTTCTCCAGCACTGGTTACATTTAGTTTTTGGTCTTTTATCTATTTTTACCTTCCCAATGAAAGAACATTATCTCCGTATCCTCCATTAATAAGCGTACGTACTTGCAATGTTTTGCAGCAATTGCCACAGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAGTAAGATTTTTGGATTTCTTACTTTTTAGACAAGAATGTTTACTCTTGTTCCTTTTAGTGACTTGCATCAAATTTACAGAGATCGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGGTAAAGATTACTCACTCTATGTATATTTAAGATCTCCTAATAAGTAAATAGTTGACAAATGCAAACAAGGACATTTATTCAGTATGTAGGATTTTTTATAATGGCGCATAGCTTAATTGTTGTTCCATTTGCATTCAGATATTAAATAATGACAAGACTGGTCTCCAATGTTTAGTTCCATGGTCTATGTTTTGTTGTATGACAAGGAGATTGGAGTCAAAAAAATTCTTTTAATACATTCATTATTTGTTAGATTGGTTACCTGTTTATGTTAAATGAAAAGGTATTAGTTAGTGTTCTATCACCATGAAACTGAATGAATTTGTGATTCTCTTTCTCCAAGAGCTTCTTGAGTAGTTATTATAACTTTGGCCTCATCAGATTGAGATATTGCTGGGTAAAACTGAGAACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAGATAGGTGATGCAGATGAGCAGATTTAAAAGATGGACTGCGTTTGCTGTATCTTTTTATTTTAGCTATAATTTTTGTTAGCAATGTCGAATTTTCCATCTATTATTTGTAGCTCTTTACGGATACGCAAGAAGTTGAGGCACTATTTCTCATTCATTGTGAGTTTGTTCATAAATTTCATTTTAGGGATCTTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCAAATTTTGTATTGTTATTTTTTGCTACCAATCATTTGGTTTTTTTTTTCCCTTCTTTTTTACAAATTTTATTTTTCTATATATCCCATGTCAAGAGTAGATATTGAAATGTAATAATATATTGGTATTGAAGCAA

mRNA sequence

AGAAGGGTATTATTGTACTTTTGCATACACATAAAATGAAGAAAATGCTTAACAAAAGAAGTAATAGAAAATCAGAGTTTATAATAAGTCTTCCTTCGACCTCCAATAACCCGAGAAGCTAGGGTTTTGAGTTGGAGTTTTTCTAGGGTTTTTGCGAGGTTGAGGAAGAGCTTCATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAACTTGAGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACAGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAAGATCGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATATTAAATAATGACAAGACTGGTCTCCAATGTTTAGTTCCATGGTCTATGATTGAGATATTGCTGGGTAAAACTGAGAACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAGATAGGTGATGCAGATGAGCAGATTTAAAAGATGGACTGCGTTTGCTGTATCTTTTTATTTTAGCTATAATTTTTGTTAGCAATGTCGAATTTTCCATCTATTATTTGTAGCTCTTTACGGATACGCAAGAAGTTGAGGCACTATTTCTCATTCATTGTGAGTTTGTTCATAAATTTCATTTTAGGGATCTTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCAAATTTTGTATTGTTATTTTTTGCTACCAATCATTTGGTTTTTTTTTTCCCTTCTTTTTTACAAATTTTATTTTTCTATATATCCCATGTCAAGAGTAGATATTGAAATGTAATAATATATTGGTATTGAAGCAA

Coding sequence (CDS)

ATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAACTTGAGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACAGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAAGATCGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATATTAAATAATGACAAGACTGGTCTCCAATGTTTAGTTCCATGGTCTATGATTGAGATATTGCTGGGTAAAACTGAGAACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAGATAGGTGATGCAGATGAGCAGATTTAA

Protein sequence

MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDADEQI

Homology

[Close]

BLAST of ClCG11G002950 vs. NCBI nr
Match: XP_008457716.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa] >TYJ97805.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 128/147 (87.07%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEERGEIGDADEQ
Sbjct: 121 LGKTENFDELMAAAAEERGEIGDADEQ 130

[Close]

BLAST of ClCG11G002950 vs. NCBI nr
Match: XP_004139317.1 (uncharacterized protein At2g34160 [Cucumis sativus] >KAE8651529.1 hypothetical protein Csa_019360 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 6.9e-56
Identity = 126/147 (85.71%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLALEKKIATSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEERGEIG+ADEQ
Sbjct: 121 LGKTENFDELMAAAAEERGEIGEADEQ 130

[Close]

BLAST of ClCG11G002950 vs. NCBI nr
Match: XP_038890892.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 128/150 (85.33%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMA 60
           MEEIVEGVNSMNLSS   DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMA
Sbjct: 1   MEEIVEGVNSMNLSSDSYDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMA 60

Query: 61  IATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMI 120
           IATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKAK                 I
Sbjct: 61  IATVVTVAEILKNNGLAIEKKIATSTVDIKDDSRGRPVQKAK-----------------I 120

Query: 121 EILLGKTENFDELMAAAAEERGEIGDADEQ 148
           EILLGKT+NFDELMAAAAEERGEIGDADEQ
Sbjct: 121 EILLGKTKNFDELMAAAAEERGEIGDADEQ 133

[Close]

BLAST of ClCG11G002950 vs. NCBI nr
Match: KAG6599408.1 (hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 4.9e-54
Identity = 124/147 (84.35%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 266 MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 325

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 326 VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAK-----------------IEIL 385

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEER E GDADEQ
Sbjct: 386 LGKTENFDELMAAAAEERAETGDADEQ 395

[Close]

BLAST of ClCG11G002950 vs. NCBI nr
Match: XP_022946216.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypothetical protein SDJN02_08742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.5 bits (563), Expect = 4.9e-54
Identity = 124/147 (84.35%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEER E GDADEQ
Sbjct: 121 LGKTENFDELMAAAAEERAETGDADEQ 130

[Close]

BLAST of ClCG11G002950 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-45
Identity = 105/148 (70.95%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEI +GVN+MNL++DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+++VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAK                 IEI 
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAK-----------------IEIT 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQI 149
           L K+E FDELMAAA EE+    DA+ Q+
Sbjct: 121 LVKSEKFDELMAAANEEK---EDAEAQV 128

[Close]

BLAST of ClCG11G002950 vs. ExPASy TrEMBL
Match: A0A5D3BH52 (DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00150 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.1e-57
Identity = 128/147 (87.07%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEERGEIGDADEQ
Sbjct: 121 LGKTENFDELMAAAAEERGEIGDADEQ 130

[Close]

BLAST of ClCG11G002950 vs. ExPASy TrEMBL
Match: A0A1S3C651 (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.1e-57
Identity = 128/147 (87.07%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEERGEIGDADEQ
Sbjct: 121 LGKTENFDELMAAAAEERGEIGDADEQ 130

[Close]

BLAST of ClCG11G002950 vs. ExPASy TrEMBL
Match: A0A6J1G312 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111450368 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 124/147 (84.35%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEER E GDADEQ
Sbjct: 121 LGKTENFDELMAAAAEERAETGDADEQ 130

[Close]

BLAST of ClCG11G002950 vs. ExPASy TrEMBL
Match: A0A6J1KJN4 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111493796 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.9e-54
Identity = 123/147 (83.67%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK                 IEI 
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAK-----------------IEIF 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEER E GDADEQ
Sbjct: 121 LGKTENFDELMAAAAEERAETGDADEQ 130

[Close]

BLAST of ClCG11G002950 vs. ExPASy TrEMBL
Match: A0A6J1CNW3 (uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC111012990 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 121/147 (82.31%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEIVEGVNS+NL  D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSLNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKAK                 IEIL
Sbjct: 61  VVTVAEILKNNGLVVEKKIATSTVDIKDDSRGRPVQKAK-----------------IEIL 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           LGKTENFDELMAAAAEERG+ GD DEQ
Sbjct: 121 LGKTENFDELMAAAAEERGDTGDTDEQ 130

[Close]

BLAST of ClCG11G002950 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-47
Identity = 108/147 (73.47%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEI EGVN+MNL+ D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAK                 IEI 
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAK-----------------IEIT 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQ 148
           L K+E FDELMAAA EE+ E  +A EQ
Sbjct: 121 LAKSEKFDELMAAANEEK-EAAEAQEQ 129

[Close]

BLAST of ClCG11G002950 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 105/148 (70.95%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60
           MEEI +GVN+MNL++DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+++VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEIL 120
           VVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAK                 IEI 
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAK-----------------IEIT 120

Query: 121 LGKTENFDELMAAAAEERGEIGDADEQI 149
           L K+E FDELMAAA EE+    DA+ Q+
Sbjct: 121 LVKSEKFDELMAAANEEK---EDAEAQV 128

[Close]

BLAST of ClCG11G002950 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-34
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 16  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAV 75
           +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH+EVELSALGMAI TVVT++EILKNNGLA 
Sbjct: 33  ETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLAT 92

Query: 76  EKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWSMIEILLGKTENFDELM 132
           EKK+ TSTV +KD+++G+ VQKAK                 IEI+LGK++ FD L+
Sbjct: 93  EKKVLTSTVGMKDETKGKMVQKAK-----------------IEIVLGKSDKFDSLV 131

The following BLAST results are available for this feature:

BLAST of ClCG11G002950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457716.1	1.1e-56	87.07	PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 D...	[more]
XP_004139317.1	6.9e-56	85.71	uncharacterized protein At2g34160 [Cucumis sativus] >KAE8651529.1 hypothetical p...	[more]
XP_038890892.1	2.0e-55	85.33	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
KAG6599408.1	4.9e-54	84.35	hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946216.1	4.9e-54	84.35	uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypoth...	[more]

BLAST of ClCG11G002950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	1.9e-45	70.95	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of ClCG11G002950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BH52	5.1e-57	87.07	DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C651	5.1e-57	87.07	uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 P...	[more]
A0A6J1G312	2.4e-54	84.35	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KJN4	6.9e-54	83.67	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114937...	[more]
A0A6J1CNW3	1.2e-53	82.31	uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of ClCG11G002950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29250.1	1.2e-47	73.47	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	1.4e-46	70.95	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	4.6e-34	64.66	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..102 e-value: 5.8E-50 score: 166.4 coord: 103..148 e-value: 1.4E-5 score: 22.3
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 1..147
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 21..79 e-value: 2.9E-13 score: 49.4
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 19..106 e-value: 4.6E-45 score: 154.3
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 20..132
None	No IPR available	PANTHER	PTHR31947:SF32	SUBFAMILY NOT NAMED	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G002950.2	ClCG11G002950.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding