ClCG11G002870 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTAATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGATATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGGTATACATACCTTCTTTCCCTCCGCTCCATTTCGATCGTGTTTCAAAGCTTTAAAATGTTTCATCTTTATCGTCTTTCAACTTTCACTATAACAAAAATTAGATCCTCTGACGTATAAACATTTCTCGGAAAAACACCCTCTCTCGATGGTTGTTTGGTCGTCAGGAGATCTAGGCATTCCCGATATCATTTTTTAAAGGCGTCAGGGAAGGTACTTTTCCCAACACCAGTTTCATTTGGTGTCGGGCTAAGTTTTAGATTAAAATAGGGTCTTTCCCGACAACACATCCATGGTGTCGGGAAAGACAGTTTATCCCAAGGTTTTTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAGGGCCTCTCCTACCTTTTTTTTTTAAAAAAAAAACGAATTTAATAGGGATTTGTCCATGCTAGTCTAACTTACCGTTAACGTCAAGAAAAGTTGTTTGCAAAAAAGTTGTTTCGTAAAGTTATATTTTTCATTCAAATTGTTGTGATAAATTGACTGTGAAAAAATTAGATAGTGTAGTACGTGGTATTATTAACAACTTTATACCATTTTATTTCATCTCAAGAAATTGTCGAGTCATTTTCATTTTACTACCAAAAAAAAAAATTCTTTTTTTGCTGGTATGGTGATTGCAACAAGTTTTGTAGTTCAAACCTAAACATGAAAATTTTCTATGAGATATTTTGTATAATTTAATTGACTTGGCCTGAAATGAGAATATGTTGAAATTTATGCAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAGAAATTTTGGTAAGAAAAATCAATATATCTTGACTTTTCTTTTCAACCACAAGTGGGGTTAG ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTAATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGATATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAGAAATTTTGGTAAGAAAAATCAATATATCTTGACTTTTCTTTTCAACCACAAGTGGGGTTAG ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTAATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGATATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAGAAATTTTGGTAAGAAAAATCAATATATCTTGACTTTTCTTTTCAACCACAAGTGGGGTTAG MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNFGKKNQYILTFLFNHKWG Homology
BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_038890693.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]) HSP 1 Score: 271.2 bits (692), Expect = 5.0e-69 Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0
BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_022966014.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]) HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65 Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_008457786.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_008457794.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo]) HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65 Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0
BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_023538268.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65 Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_004139322.1 (zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736555.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >KAE8651526.1 hypothetical protein Csa_019441 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 7.5e-65 Identity = 110/128 (85.94%), Postives = 116/128 (90.62%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06 Identity = 35/106 (33.02%), Postives = 45/106 (42.45%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06 Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06 Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06 Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06 Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A0A0LIX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67 Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A6J1HSH3 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465727 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66 Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A1S3C6B6 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103497392 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65 Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A6J1FCS1 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444219 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 6.2e-65 Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0
BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A6J1CPG4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111013106 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63 Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0
BLAST of ClCG11G002870 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 184.9 bits (468), Expect = 4.4e-47 Identity = 77/139 (55.40%), Postives = 95/139 (68.35%), Query Frame = 0
BLAST of ClCG11G002870 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 135.2 bits (339), Expect = 4.0e-32 Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 0
BLAST of ClCG11G002870 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27 Identity = 58/166 (34.94%), Postives = 80/166 (48.19%), Query Frame = 0
BLAST of ClCG11G002870 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14 Identity = 54/209 (25.84%), Postives = 72/209 (34.45%), Query Frame = 0
BLAST of ClCG11G002870 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11 Identity = 39/113 (34.51%), Postives = 52/113 (46.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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