ClCG11G002870 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G002870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	CG_Chr11: 3034356 .. 3035523 (-)
RNA-Seq Expression	ClCG11G002870
Synteny	ClCG11G002870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTAATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGATATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGGTATACATACCTTCTTTCCCTCCGCTCCATTTCGATCGTGTTTCAAAGCTTTAAAATGTTTCATCTTTATCGTCTTTCAACTTTCACTATAACAAAAATTAGATCCTCTGACGTATAAACATTTCTCGGAAAAACACCCTCTCTCGATGGTTGTTTGGTCGTCAGGAGATCTAGGCATTCCCGATATCATTTTTTAAAGGCGTCAGGGAAGGTACTTTTCCCAACACCAGTTTCATTTGGTGTCGGGCTAAGTTTTAGATTAAAATAGGGTCTTTCCCGACAACACATCCATGGTGTCGGGAAAGACAGTTTATCCCAAGGTTTTTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAGGGCCTCTCCTACCTTTTTTTTTTAAAAAAAAAACGAATTTAATAGGGATTTGTCCATGCTAGTCTAACTTACCGTTAACGTCAAGAAAAGTTGTTTGCAAAAAAGTTGTTTCGTAAAGTTATATTTTTCATTCAAATTGTTGTGATAAATTGACTGTGAAAAAATTAGATAGTGTAGTACGTGGTATTATTAACAACTTTATACCATTTTATTTCATCTCAAGAAATTGTCGAGTCATTTTCATTTTACTACCAAAAAAAAAAATTCTTTTTTTGCTGGTATGGTGATTGCAACAAGTTTTGTAGTTCAAACCTAAACATGAAAATTTTCTATGAGATATTTTGTATAATTTAATTGACTTGGCCTGAAATGAGAATATGTTGAAATTTATGCAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAGAAATTTTGGTAAGAAAAATCAATATATCTTGACTTTTCTTTTCAACCACAAGTGGGGTTAG

mRNA sequence

ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTAATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGATATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAGAAATTTTGGTAAGAAAAATCAATATATCTTGACTTTTCTTTTCAACCACAAGTGGGGTTAG

Coding sequence (CDS)

ATGAATATGAATTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGTTACCCAAAATATGGTGGCCCTGACCCAACAACATATGAATACATTAATGCTAAAACAGATGAAGTTTTGGCTGGAGATTGGTATTGCAATTGTGGAGCACATAATTATGCCAGTAGATCAACTTGTTATAGGTGTAATGCCTATAAGACTCATGATATTGGTGCTTTGCCTGGTTGGAAATCTGGTGATTGGATCTGCACTAGAATAGGATGTGAAACTCACAATTACGCTAGTAGAATGGAATGCTACAAATGCAAAACTCCAAGAAATTTTGGTAAGAAAAATCAATATATCTTGACTTTTCTTTTCAACCACAAGTGGGGTTAG

Protein sequence

MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCNCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRNFGKKNQYILTFLFNHKWG

Homology

[Close]

BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_038890693.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 5.0e-69
Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYINAKTDEVLAGDWYC 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+ Y +YI++KTDEVLAGDWYC
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSAYDQYIHSKTDEVLAGDWYC 60

Query: 61  NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPR 120
           NCGAHNYASRSTCYRCNAYKT D+GALPGWKSGDWICTRIGCETHNYASRMECYKCK PR
Sbjct: 61  NCGAHNYASRSTCYRCNAYKTLDVGALPGWKSGDWICTRIGCETHNYASRMECYKCKAPR 120

Query: 121 NFG 123
           +FG
Sbjct: 121 DFG 123

[Close]

BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_022966014.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCN 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+      EVLAGDWYC+
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEF---NKTEVLAGDWYCH 60

Query: 61  CGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRN 120
           CGAHNYASRS+CYRCNAYK+ DIGALPGWKSGDWIC RIGCETHNYASRMECYKCKTPR+
Sbjct: 61  CGAHNYASRSSCYRCNAYKSADIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRD 119

Query: 121 FG 123
           FG
Sbjct: 121 FG 119

[Close]

BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_008457786.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_008457794.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+  N      TDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRS+CYRC  NAYK+ DIGALPGWKSGDWIC+RIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKTPRNFG 123
           CKTPR+FG
Sbjct: 121 CKTPRDFG 128

[Close]

BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_023538268.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCN 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+      EVLAGDWYC+
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEF---NKTEVLAGDWYCH 60

Query: 61  CGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRN 120
           CGAHNYASRS+CYRCNAYK+ DIGALPGWKSGDWIC RIGCETHNYASRMECYKCKTPR+
Sbjct: 61  CGAHNYASRSSCYRCNAYKSADIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRD 119

Query: 121 FG 123
           FG
Sbjct: 121 FG 119

[Close]

BLAST of ClCG11G002870 vs. NCBI nr
Match: XP_004139322.1 (zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736555.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >KAE8651526.1 hypothetical protein Csa_019441 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 7.5e-65
Identity = 110/128 (85.94%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+  N      TDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRS+CY+C  NAYK+ DIGALPGWKSGDWIC+RIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKTPRNFG 123
           CK PR+FG
Sbjct: 121 CKAPRHFG 128

[Close]

BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 35/106 (33.02%), Postives = 45/106 (42.45%), Query Frame = 0


Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------- 61
           N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+       
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREK-----TTEAKMMKAGGTEIGKTLAEK 64

Query: 62  -----LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSG 93
                 A DW C  CG  N+A RS C  CN  K   +    G+  G
Sbjct: 65  SRGLFSANDWQCKTCGNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

[Close]

BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0


Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------- 61
           N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+       
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREK-----TTEAKMMKAGGTEIGKTLAEK 64

Query: 62  -----LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSG 93
                 A DW C  C   N+A RS C  CN  K   +    G+  G
Sbjct: 65  SRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

[Close]

BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0


Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------- 61
           N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+       
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREK-----TTEAKMMKAGGTEIGKTLAEK 64

Query: 62  -----LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSG 93
                 A DW C  C   N+A RS C  CN  K   +    G+  G
Sbjct: 65  SRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

[Close]

BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0


Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------- 61
           N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+       
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREK-----TTEAKMMKAGGTEIGKTLAEK 64

Query: 62  -----LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSG 93
                 A DW C  C   N+A RS C  CN  K   +    G+  G
Sbjct: 65  SRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

[Close]

BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 34/106 (32.08%), Postives = 44/106 (41.51%), Query Frame = 0


Query: 2   NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEV------- 61
           N   S GDW+C    C +VNF +R +C RCG  K      T  + + A   E+       
Sbjct: 5   NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREK-----TTEAKMMKAGGTEIGKTLAEK 64

Query: 62  -----LAGDWYC-NCGAHNYASRSTCYRCNAYKTHDIGALPGWKSG 93
                 A DW C  C   N+A RS C  CN  K   +    G+  G
Sbjct: 65  SRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105

[Close]

BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A0A0LIX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+  N      TDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRS+CY+C  NAYK+ DIGALPGWKSGDWIC+RIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKTPRNFGKKNQYILTFLF 134
           CK PR+FGK  ++   FLF
Sbjct: 121 CKAPRHFGKNIKFSSLFLF 139

[Close]

BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A6J1HSH3 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465727 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCN 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+      EVLAGDWYC+
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEF---NKTEVLAGDWYCH 60

Query: 61  CGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRN 120
           CGAHNYASRS+CYRCNAYK+ DIGALPGWKSGDWIC RIGCETHNYASRMECYKCKTPR+
Sbjct: 61  CGAHNYASRSSCYRCNAYKSADIGALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRD 119

Query: 121 FG 123
           FG
Sbjct: 121 FG 119

[Close]

BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A1S3C6B6 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103497392 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYIN----AKTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+  N      TDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSTCYRC--NAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRS+CYRC  NAYK+ DIGALPGWKSGDWIC+RIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKTPRNFG 123
           CKTPR+FG
Sbjct: 121 CKTPRDFG 128

[Close]

BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A6J1FCS1 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444219 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.2e-65
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCN 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+      EVLAGDWYC+
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEF---NKTEVLAGDWYCH 60

Query: 61  CGAHNYASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPRN 120
           CGAHNYASRS+CYRCNAYK+ DI ALPGWKSGDWIC RIGCETHNYASRMECYKCKTPRN
Sbjct: 61  CGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRN 119

Query: 121 FG 123
           FG
Sbjct: 121 FG 119

[Close]

BLAST of ClCG11G002870 vs. ExPASy TrEMBL
Match: A0A6J1CPG4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111013106 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYCN 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEY       +LAGDWYCN
Sbjct: 3   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDHQALLAGDWYCN 62

Query: 61  CGAHNYASRSTCYRC--NAYKTHD-IGALPGWKSGDWICTRIGCETHNYASRMECYKCKT 120
           CGAHNYASRS CYRC  NA+K  D IGALPGWKSGDWICTRIGCE HNYASRMECYKC T
Sbjct: 63  CGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECYKCNT 122

Query: 121 PRNFG 123
           PR+FG
Sbjct: 123 PRDFG 127

[Close]

BLAST of ClCG11G002870 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 184.9 bits (468), Expect = 4.4e-47
Identity = 77/139 (55.40%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 3   MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYC--- 62
           M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY Y      EV+AGDWYC   
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLY---NRTEVMAGDWYCGAL 60

Query: 63  NCGAHNYASRSTCYRCN----------------AYKTHDIGALPGWKSGDWICTRIGCET 122
           NCG+HNYASR++CYRC                 AY        PGWK+GDW+C R+GC  
Sbjct: 61  NCGSHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGV 120

[Close]

BLAST of ClCG11G002870 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-32
Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYINAKTDEVLA 67
           GDW C  C H+NF++R++CQRCG             +  +GG   + + +      +V  
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTG--SDVRP 64

Query: 68  GDWYC---NCGAHNYASRSTCYRCNAYKTH------------------DI--------GA 127
           GDWYC   NCG HN+ASRSTC++C  +K                    DI        G 
Sbjct: 65  GDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGG 124

[Close]

BLAST of ClCG11G002870 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 58/166 (34.94%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPKYGGPD----------PTTYEYINAKTDEVLAGDW 67
           GDW C +C H+NF++R++CQRC  P+ GG            P +  +      +V  GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 68  YCN---CGAHNYASRSTCYRCNAYKTH---------------DIGALPG----------- 127
           YCN   CG HN+A+RS+C++C A K                 ++G   G           
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

[Close]

BLAST of ClCG11G002870 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 54/209 (25.84%), Postives = 72/209 (34.45%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYE---- 67
           GDW+C  C + N+  RE C++CG  K                    Y    P +++    
Sbjct: 50  GDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGS 109

Query: 68  ---YINAKTD-----EVLAGDWYCNCGAHNYASRSTCYRCNA------------------ 121
              + NA        E  +GDW C CG HNY+SR  C +CN                   
Sbjct: 110 LLAFSNATNQASVHKEWRSGDWICRCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAH 169

[Close]

BLAST of ClCG11G002870 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 39/113 (34.51%), Postives = 52/113 (46.02%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYINAKTDEVLAGDWYC-NCGAHNY 67
           GDW+C  C  +NF + ++C +C   K  GP  T+   I     E+  GDW C  CG  N+
Sbjct: 338 GDWLCPECSFLNFTRNQSCLKC---KAKGPKKTSMVNI----VEMKKGDWNCTGCGYMNF 397

Query: 68  ASRSTCYRCNAYKTHDIGALPGWKSGDWICTRIGCETHNYASRMECYKCKTPR 120
           AS   C  C   + H   A P    GDW C    C+  N+     C KC+  R
Sbjct: 398 ASNKQCRECREQR-HKTLAEP----GDWECP--SCDFVNFRRNDACKKCECKR 436

The following BLAST results are available for this feature:

BLAST of ClCG11G002870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890693.1	5.0e-69	91.87	zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]	[more]
XP_022966014.1	1.5e-65	89.34	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]	[more]
XP_008457786.1	2.6e-65	86.72	PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_0084...	[more]
XP_023538268.1	4.4e-65	88.52	zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. ...	[more]
XP_004139322.1	7.5e-65	85.94	zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736...	[more]

BLAST of ClCG11G002870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZLX5	1.3e-06	33.02	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
O95218	6.3e-06	32.08	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	6.3e-06	32.08	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	6.3e-06	32.08	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]
Q5R580	6.3e-06	32.08	Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=Z...	[more]

BLAST of ClCG11G002870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIX1	3.0e-67	82.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1	[more]
A0A6J1HSH3	7.3e-66	89.34	zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=...	[more]
A0A1S3C6B6	1.3e-65	86.72	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1FCS1	6.2e-65	88.52	zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata O...	[more]
A0A6J1CPG4	9.9e-63	85.60	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]

BLAST of ClCG11G002870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	4.4e-47	55.40	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	4.0e-32	38.89	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.3e-27	34.94	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	1.3e-14	25.84	zinc finger (Ran-binding) family protein	[more]
AT1G48570.1	1.8e-11	34.51	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 92..118 e-value: 9.3E-6 score: 35.1 coord: 8..32 e-value: 4.3E-6 score: 36.2 coord: 55..78 e-value: 4.6E-5 score: 32.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 90..119 e-value: 1.0E-7 score: 31.1 coord: 8..34 e-value: 3.5E-4 score: 19.8 coord: 54..77 e-value: 4.0E-4 score: 19.6
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 10..29
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 94..115
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 6..35 score: 8.817719
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 90..121 score: 9.653342
None	No IPR available	GENE3D	4.10.1060.10		coord: 1..37 e-value: 8.5E-10 score: 39.7 coord: 87..121 e-value: 1.3E-10 score: 42.3 coord: 45..82 e-value: 4.4E-10 score: 40.6
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 2..124
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 2..124
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..36
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 51..82
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 89..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G002870.2	ClCG11G002870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding