ClCG11G002760 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G002760
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr11: 2940957 .. 2947327 (-)
RNA-Seq Expression	ClCG11G002760
Synteny	ClCG11G002760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCGTTTTGAAGATTGTTGATTGTTGGAATGTAAAGCACTTGCACAAAAGAGGCGTTGATGTTAGTGATTTCAGCATTGTTGATACTACTTCGATGAACATTGAAGGAGATCACAACAGTATGGATGCATATAATTATCTAATGCCATGCTTCGAAGGTGATGACGATGATGAAGACCCAATTTATGATTATGCTCCAGCTGCGTAATTTGATGCATACATATGATTACTACGTGAGAGTTGAGTCATATAACATTATTTTACATTTTAATGATCTATTTGTTTTTAATTTTAATATCCATAAAAGAGAAGTCTAGTCTTTTAATAAATTATTTCTTTTGGTAAGCTATGTGTAAGAAAAAGAAAAAGAATTATATTCTACATTAACGTGAAATAATATTTGAAAAAGGAGACAATTCATTGTTGATTTATTTTCGTAAATGAAACATAATATGTTCTCCATTATTGTTCTTCCATCATATTTTTTCACAATATTTTTAGGTCAATCACATATATTTATTTAAAGAAATATAGATTACAATTTTTTTTTTAGAATAACAATTGTGAGAATGGGAATTGAACCTCTAACTTCTAATAACAAAGGTTATGTCAATTACTACCCACCAAAGCATATTTAGCAAAGAAACATAATTAATTATATATAAATATTTAGTATTTCAAACATTTTTTTTTTTAGGATAACAATTTATTATCCTTGATAAGCAAAAGTATGACATGTTTATTTTTATGGATCACTAATTATACCTATGTTATAATTAGTGGATGGTGAATTAGTAGAAATTAAATAAAAATGTAAAATTGGTACATCTTGAAGGAACCGAATTTCCTGCGGAAGCGAAGGATTGATTGTCTTGTACCATTAAATTTGTTTTTGAAAAACTAAAATTTAATAAGGATAAACAACAAAATATTAGCATTAGCATGATTTTTAGAAGAAATAAAGGATAAAAGATTTCCTACCTTTCAAGACTGTCTTCAGATTGTCTTTAGTGGAATTTTTCTTTTTTAAGTCACGAACCGAAAAAATTCTCCAATGGAAACAACAAGAACTCTTTTTGTTTGGATCACCACCACAATGTTACCTTACAATTCTCAAGGAAGAATCTAACAGAGAAGTTGTGTGAACTCTCTATTTCTTTTGTTAAGGAAATTCTTTTTGGGAGAGAATAGGGAATTGGAGAAGGAAAGATCTCACAAAACTTTTTTGTGTTAAGGTATGCTATAACTTACTCTCCCCTTTCCCTCTTCTTTTTAGCGTGAGAGATGAGAAATAACTTCTTAAAAAAGATGGGAAGTTATTTCTTTAATAATAAAAATAATAATAATAATAATATTATTATAATTAATTTAATTATATAATTAAATCATATTTAATATATAATTAAATAAATTAATTAATTAATCAATAAATTAAATATTCATTTGAATCATATTCAAACAACATTCTCTCACATAACCTATAGTTTTGATATGAATTTGATTCATATTAATTCTTAACTATAAAAAACATAACCTATAGTTTTGATATGAATCTCATTCATATTAATTTTTAACTATAGTTTTTATATGAGCCTCATTCGTATAATTAATATTTAAATCTCATTTAGATATTTATATCTCTCATAATATAAAGTATAAATTTTGAATCTCATTCAAAATAAACTTTATATTATAATGTATTTATATACATTATGTAAATTATATCACATACAATTAATTCCCTTATTAATTTGAACATTTTAAATTAAACCAAAATGTTTAATTCTCATACTAATCATTAATGAGCAAGCAAGGGGACCTCATGGACCTATAATTAAAAGCTCCAATGATATGCAATTAATCAATTAAATGCTTTAATTAGATTAATCAATATTCTTAAAGTCTAAGTATTCATAACATAGGCATGGGTCCTTAGTTTATTGGACTTAGAGTTATGATAAAAACAATTCACACATATTCAATAACATATTTATTGAATTAAATAATATTTATAACAACTTTATTGAGAATATGTTCAATGTTTACAAACTACGAATTTTAAGACATAAAACCCAACAAGATTGATTTTCTCCAAATTTTAATTTATAAAATTAAATAGTACCTTTTATAATTAAATTTGGAATATGTTGATTTGTTATAATAGAAATTAGGGCAAAATACACTTTTGGTTTACGAAGTTTGAGTTTAGTGTCACTTTGGTCCTTGAAATTATAAAATAGACACTTTAGTCACTGAGGCTTGATAAATAGTTATAAATGGTCCTTAGACAGTTAGTTGACTAACGAGAAATGATGTGGAGAGTTAGATTGTTGATTGTGGGTTTACGAGGGGACAAATATATGAATGTAATATTAATTTTGTTAGTGAGGTGACTTGTTCTCTCCTTTACTCTTTTCCTTCCCATCTTCTTATATTCTCACACGTTCGAATACGCTTTGCCACAACCATCCGCCGACCACCCCTCCTTAGCAATATTCTCACACTCATCATCCAACATGAAAATTCAAAGGCCACCTCTGTAAAGTACAAGGAAAATTATCTTGTAAATTTTTTCATGTCCAAACAAATTTCGGCTAAAATCTGCTTTGAATCTTCCTTTTTCTTTGTTCGGTATTTAAAAAAAAAAAAAAACACTAAATTTCATCCATATAAACTAGAATAATGGAAGCCAGTAATTCCATACATACACCAAATCGTCTGGTAGCTAGTTTGGCCTTCAACCTTTTGCATCTCTTCCTCTTCTTGTTGATCATCTCCATGACAACGGCTAGGTGTTTGGGTAAAATAGAATAGAGTTTGAAGCATGTTGAATAGTTAATAATTTTTGTAGATGGTGAGAGAAGGCAAATAATGGGCATGAAGAAAGCGACGACTTTTGAGATTGTGGACATCAAAATTGGAGAACCCGACTTGGGTTCTTTGCTGCTTGTTATAGCTAGTAAAAATTGTAGTGGGGGAAATGAAGTTTTGAAAGCAACAAATTTAGAAGTTAATTGAAAATGTATTCCATTAATTAATGATTTGAGTCAGTTTGTTCACAATGTTTGTCGGATCAAGGAAGATGAAGCAAAAAATTTGCAATGGATTTCTGGGTTGAATTTGTCGGTTTGTTCAACATGAAAGTACTTGCATAAACAGAGAAATTATTTTGTTTTCAGAATGCTGATACACACCAGATCATCATCTTGCACGGTGGACAACAATGGTGATGTTTGTCATAGGTGAGGGAGAATAAGGGCAAAAAGGAAAAGATAGAAGGAGAGAGAACACCTTACTAATTATATTAATATATTTGTCTCGTCATCAATGCTCAATCAACAACCTAACCCTCCACGTCATTTTCCGTTAGTCACTTAACGAAAAGTACATTTAAAACTATTTATCAAACTCAAAGACTAAAGTGACCATTTTAAAACCTTAGGGACCAAATTGACACTAAACCCTCAAATTTTGGGATACAAAAAAGTGTATTTTGCCCTATAAATTATAAGCGAACAACCATCCCGTATGTATGATCATCAAATAATGTTTGACTTTAACTTAATTAAAAATTTTCATTAGCTTTCAACTTTATTGTTTAGCATGCGGAGTTGACTTCATATATTTATAAAGTTCATATGTCTATTTCTAAAGTGCGTTAGTTTTGGATGCTAAGTCGAGTTCATAGGAACTCTTTCTAAAGTGTGCTAGTTCAGAGTACAGAGTAAAGTTCATATATTAAGAACATTTGGTGCAGTTTTTTATGAGATGAATAATCTATTTTTATGGTGATTATTTTTGTTTTTGGAAACCTTTTTATTCAATAAACCTACATATTTTTTAATAAACTATGGAATCACTTTGTTTTGTTTTGTTTTTTTAAATACAAATGTATTGTTGAGAGTTTTGAAAAATGGGGTTTAGGGTTTACTTTTGGTTCACGTTCATTTTTTTTTTTAAAAAAATATAAACAATCATTTTACAAATTTGTGCCTGTGACATTTCTAATTAAGTTGGACAAAATTATATAGGATTCATTGGTACAAAACAAATTTAAATTTATATTGCAAGTGAAATATCCTCCAAAATGTAATTATATTGTAATTACCCTATATTATATTATAGTATACAAAACAAATTTGAATTTATATTAATGGTCATATTACATGGTTGCCACAAAAAATATATAACAAAAAGTATTTAGTTTGTGTATATGCTAAAAATGTTTTTATTAATGTATAATTACTATAAATAATGACTTGAATATAAAAGATTATGAAACTAATAAAAAAAAATTGAATGAAAACTTGTTTTAAACTGTTTGTGTATATACTAAACCATTTATTGACATTTTATAATAATCGATATATGTATTTTTTAAATTAATGATTATTTTTAAGCTCTAAATTAAAATTTTATGGATGGTTTTATGTCACGAGCGTCAACAAAACTCAAATTTGAAGTAGTGATAATTTAAAACAATGGTCATCAGAGTTGGTGGAGGTGGTAACTATTGGAGGTCGCTAGAGTTGGTTGTTGATGGTGGTGGTCAGATGTGACTAGAGTTGGCCGCCACTTTTTTAAGTACATTACCCCCATTCGTGCAATTTGATTGCTCTACCTGATGTGTCAATTTGATTACAATGAAAGCTATGTCCTGTATAGTAGAGAATGCCAGAACCAAATCCACGTGCATTATTATGCCATAGAAGCTCAATTGATTTAAAAACACTTCTCAAATGATGGAGTACTCAAAGGATTGGTTGAGATTTTAGAGAGTATTGAGAGAGATTTCATAAGGCAGATGACACTGATACACCACTCTGCTCTGTTTACAAAACCCACATCTCTCTCTAACACAATGTGTCTCTTTTTCAAACATAACATACTCATCAATGAAACTTTAAAAACATATATATCAATCACTTAAAATGTGAAAATGAAATATGAAAAAAATATACAATTCATTTTGATGAAAATATGTATAAAATAATGAAAATGATTGAGATACAATTAACTGTGCTAACAAAAAAAATTTAAATAATTGTTGATTAGGTAAGACAAAATCAAATTAAAAATAGGGGGAGAAAAATTATGAGGAAGAGGTTGGTTCATTTTGAATCCATTCGTAAAGTAGTTATCAAAATCTAATTTGAATATTAAAAATAAATTTGATTCTTAAAAGAGGGCATAAATTACATGATGACGCTCATTTTCATTATGAAATCGAATTTGTTAGATTCTAATTTGATTAATCAAGCTCTCCAATTACACTGGATTTATGTCATGGTTATTAATGAAGCTCTCCTCCACTTACACTGTATTTATATCTTAGTTATTAATCAGACTCTCCACTTACACTGTATTTCATATTATTCCGGACATACAAACCAACTAAGGGCAAATAAGGTATTATCAAAATGTCACCCACGTGCCTTAGCTTGCACACAATTTGCTATATATCCAAACGAATTCTCATTTGTTGCTATCTTATCCAATTTCCCTTAAAATAATTACTATTTCTTTTTAAATCCTTAGTTTGGGTATTAAATTTTTAAAAATTTTGAGGGTATTGTGGTAAAACACACACTTATTTATTTAATTATTAACAATTACACAAGTTAGTAAATACAACTAAAAGCAGTTTTGTTATAGTTGAGCCCCTTGTTTCTGTAAGTTCGTAAACATAATCAAAAGTAGTCCATTTACTATTGCATTTTAATTACTTTATAATGTAATATAATTATGAGAGTTATAAATACACTATAAAAAAAGTGAAGAAGAAAAAAAAGTAATCCCAAGTTGAGAATAGTGTAAATGCAAAAGGAAAAAGAAAAAAAAAAAAAAACCCTAAATAGAAATAGATATATATTCTCTTCTTATCTTCATATATCTCTCAAGATTCCTTCATTTTGGAATTTGTTTGGTTGAAAAAACTTGTCTTCCACGTGTTTGATGACATGTCAACCTAAATCCAACGTGGCTACAGCTACATTGAAATCCCATTCGTGGTTGGAGTGCACCATGAGGAGCCCCTCACTCTGGCTCGTGCCCACCTTGCGCCACAAACGAGCCCACTCATAAATCAATCCCTTCTCACCTTTTCATCTTGCCTATATATAAAGTACCAAAGACCACACCAAATAACCAAAATCTGATCAACAATAATTCCTCTCCTCTTTATTTTCTTGATCTAGACATCAAAATATCAACATGGTTCCCATTTCTAAATCATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGGGAACATGGTTATTGCGATTATATTGCTCTCGTTTCAACGGTAGAAGGGGATGGTGACGACGATGACGACGGCTACGACTATGCTCCGGCTGCTTGA

mRNA sequence

ATGTCTATCGTTTTGAAGATTGTTGATTGTTGGAATGTAAAGCACTTGCACAAAAGAGGCGTTGATGTTAGTGATTTCAGCATTGTTGATACTACTTCGATGAACATTGAAGGAGATCACAACAGTATGGATGCATATAATTATCTAATGCCATGCTTCGAAGGTGATGACGATGATGAAGACCCAATTTATGATTATGCTCCAGCTGCACATCAAAATATCAACATGGTTCCCATTTCTAAATCATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGGGAACATGGTTATTGCGATTATATTGCTCTCGTTTCAACGGTAGAAGGGGATGGTGACGACGATGACGACGGCTACGACTATGCTCCGGCTGCTTGA

Coding sequence (CDS)

ATGTCTATCGTTTTGAAGATTGTTGATTGTTGGAATGTAAAGCACTTGCACAAAAGAGGCGTTGATGTTAGTGATTTCAGCATTGTTGATACTACTTCGATGAACATTGAAGGAGATCACAACAGTATGGATGCATATAATTATCTAATGCCATGCTTCGAAGGTGATGACGATGATGAAGACCCAATTTATGATTATGCTCCAGCTGCACATCAAAATATCAACATGGTTCCCATTTCTAAATCATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGGGAACATGGTTATTGCGATTATATTGCTCTCGTTTCAACGGTAGAAGGGGATGGTGACGACGATGACGACGGCTACGACTATGCTCCGGCTGCTTGA

Protein sequence

MSIVLKIVDCWNVKHLHKRGVDVSDFSIVDTTSMNIEGDHNSMDAYNYLMPCFEGDDDDEDPIYDYAPAAHQNINMVPISKSSFALWLKNLEGGEHGYCDYIALVSTVEGDGDDDDDGYDYAPAA

Homology

[Close]

BLAST of ClCG11G002760 vs. NCBI nr
Match: KAG6599418.1 (hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 6.9e-17
Identity = 64/131 (48.85%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MSIVLKIVDCWNVKHLHKRGVDVSDFSIVDTTSMNIEGDHNSMDAYNYLMPCFEGDDDDE 60
           MSIV KI   WNV   +K   D +D  I+  T MN E D NS+DAY YL PCF     D+
Sbjct: 1   MSIVFKIAVRWNVNDSYKGDDDGTDLDIIYATKMNTEEDRNSIDAY-YLKPCF-----DD 60

Query: 61  DPIYDYAPAAHQNINMVPISKSSFALWLKNLEGGEHGY-----CDYIALVSTVEGDG-DD 120
           D  +D          MVPISK   A WL +L  G HGY     C YIA VS  + DG DD
Sbjct: 61  DAFFD----------MVPISK-PMASWLTSLGAGRHGYGERRDCGYIAPVSMAKEDGDDD 114

Query: 121 DDDGYDYAPAA 126
           DDD YD+APAA
Sbjct: 121 DDDSYDFAPAA 114

[Close]

BLAST of ClCG11G002760 vs. NCBI nr
Match: KAA8523059.1 (hypothetical protein F0562_009482 [Nyssa sinensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 41/82 (50.00%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 54  EGDDDDEDPIYDYAPAAHQNINMVPISKSSFALWLKNL------EGGEHGYCDYIALVST 113
           +GDDDD+D  YDYAPAA     M PISK     W K        + G+ GY    A  + 
Sbjct: 41  DGDDDDDDSDYDYAPAASTEEKMSPISK-VIGPWCKRHGDGDGDDDGDDGY--NYAPAAC 100

Query: 114 VEGDGDDDDD----GYDYAPAA 126
           +EGDGDDDDD    GYDYAPAA
Sbjct: 101 MEGDGDDDDDDDDGGYDYAPAA 119

[Close]

BLAST of ClCG11G002760 vs. NCBI nr
Match: KGN60650.1 (hypothetical protein Csa_019209 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 33/56 (58.93%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 76  MVPISKSSFALWLKNLEG-GEHGY-----CDYIALVSTVEGDGDDDDDGYDYAPAA 126
           M PIS+    L LKNL G G HGY     C Y  LVS  EGD DDDD GYD+APAA
Sbjct: 1   MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 56

[Close]

BLAST of ClCG11G002760 vs. ExPASy TrEMBL
Match: A0A5J4ZYE2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_009482 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07
Identity = 41/82 (50.00%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 54  EGDDDDEDPIYDYAPAAHQNINMVPISKSSFALWLKNL------EGGEHGYCDYIALVST 113
           +GDDDD+D  YDYAPAA     M PISK     W K        + G+ GY    A  + 
Sbjct: 41  DGDDDDDDSDYDYAPAASTEEKMSPISK-VIGPWCKRHGDGDGDDDGDDGY--NYAPAAC 100

Query: 114 VEGDGDDDDD----GYDYAPAA 126
           +EGDGDDDDD    GYDYAPAA
Sbjct: 101 MEGDGDDDDDDDDGGYDYAPAA 119

[Close]

BLAST of ClCG11G002760 vs. ExPASy TrEMBL
Match: A0A0A0LF41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 33/56 (58.93%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 76  MVPISKSSFALWLKNLEG-GEHGY-----CDYIALVSTVEGDGDDDDDGYDYAPAA 126
           M PIS+    L LKNL G G HGY     C Y  LVS  EGD DDDD GYD+APAA
Sbjct: 1   MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 56

[Close]

BLAST of ClCG11G002760 vs. ExPASy TrEMBL
Match: M1BUQ2 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 39/91 (42.86%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 37  EGDHNSMDAYNYL-MPCFEGDDDDEDPIYDYAPAAHQNINMVPISKSSFALWLKNLEG-G 96
           +GD +S D Y+Y    C EGD DD D  YDYAPAA                   +LEG  
Sbjct: 18  DGDDDSDDGYDYAPAACLEGDGDDNDGDYDYAPAA-------------------SLEGDD 77

Query: 97  EHGYCDYIALVSTVEGDGDDDDDGYDYAPAA 126
           + G  DY    S    +GDDDD  YDYAPAA
Sbjct: 78  DDGDYDYAPAASL---EGDDDDGDYDYAPAA 86

The following BLAST results are available for this feature:

BLAST of ClCG11G002760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599418.1	6.9e-17	48.85	hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA8523059.1	1.1e-06	50.00	hypothetical protein F0562_009482 [Nyssa sinensis]	[more]
KGN60650.1	2.7e-05	58.93	hypothetical protein Csa_019209 [Cucumis sativus]	[more]

BLAST of ClCG11G002760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G002760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J4ZYE2	5.4e-07	50.00	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_009482 PE=4 SV=1	[more]
A0A0A0LF41	1.3e-05	58.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1	[more]
M1BUQ2	3.3e-04	42.86	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of ClCG11G002760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37077	FAMILY NOT NAMED	coord: 1..70 coord: 100..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G002760.2	ClCG11G002760.2	mRNA