ClCG10G021900 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G021900
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 36432190 .. 36435039 (-)
RNA-Seq Expression	ClCG10G021900
Synteny	ClCG10G021900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAAAAGAATGGGGCTTAATTAAGAAACCCTCCACTGTGGGAAAATTGAAGAAGATTGATTCAGTCGGCAGTAAGGCTGAAAGCGAGCGTTTAGTTTACGCTCAAATAGATATATCATTTATATATGGGCGTCATACGAGTGAAGCACCAGGAACTTTTACCTACCCTTTAGAAAACTTTGGACCCCATGAAAAAAACTTTGAAGAATATGCTTACAACTCCTCTAATTCTTGGTTTGCAATTGAAGGGTTTTAAGGAAAGATTAGGTTTTTTATATGTGTAATACAAGAGAAGGTTTGGCTAAAGATTAAGCAATGGGAAGTGGATTAGGTCAGAAAAAGAGATGAGTGGAGCCAACTGAGAATAAAAAGAAGAATGAGAAGAAGTAGAAGAGGGAGAGAAGAAAAAGGGGGAGCAAGAGAGAGACAACCACTCGATACTCTTCAGCATCATCGTTGCTTTTGAGGCGCAATGGAGGGGCCCTACGAGTTTCTCTTTTGTTGGCCATCTTGATTCCCATTTTCAGTAGAATCACAGAAATCCATCAGCATGGTAATGCTCCTCTTTCTCTCTATTTCTCTCTCCCTGTTGCTTGAGGCTAGAGAAATTTGTTAGTACTTACTCCTCTATCGTCTATTCTAAATGATATATTAGGAATGTTTAGGGCACTAAATTAATTTCTATAATTAGTAATTATAATAGTTTGTAGGTTATAATAGTAAGTTCAAACTATTTTAATCCAAGTTGTAATAGTATGTACTTGAAATGTAAATTATTTTAGCAAACTTTATATTTGCAACCCCAAAGATGGTAGCATGCACTGCCAACTTCAAGTTCGAGGGCCAAACACAGCCTATTCATTTTATAGGATCTACATTATTTTTTGAGAAAATATCAACTTTTACCTTAAATTTTAGGAGCTGTAACAATTTTAAATATGAACTAATAATTGTATCAATTTAGACTTTGAACTTTTGTAAATGTATCAATTTATAACCTCCACTTTGTTTTGTTTGGACAAACATCGTGTGAATCTAATAATTGAATCAACTGAAAATGGGAACCAATTTAGACTCTTAGACAATTTACTGTGAAACTTGTCCATACATTTACTCTAATTATCCATTTTGTAAAATTGACATTTGAAAAAGTCTACACATGTTTAAAAATTAATGCATGGATAATTTTGAAATGTAATCAGAAGGGTCTAATTTAGGAGTTTAATTAACTTAAATTATAAATTTCACACGATATCGATCTAATGAAATTTGGAGAGGGTGTAATTTGATACATTTTAAAAAATTTTAGGGCTTAAATTGATACAATTATTAGTTTAAGATTTTAATTGATATAACTATAAAGATTAAGTTATAAATCGATATTTGTTACTATTATTATAAAAAGTAATCTGGGGCGGAAGTTAGTAGGATAGCACTAGAATGGTTTCCGTGAGGTCACAGGCTGTGTTTTTTTAAAAAAAAATTATTTGAATGAGCAAAGCAAAAAAAGCTTTTTGTCATTCACTTTTTCTTTTCTTCTTTTAGTGTCCTTTGGCAGAAGAATTTGTGTTGAAAAATCTGCATGCTCTGAGATTTTTGCCCTTTTGACTGAGAAATAAAGGTAAGGGGGGCCTTAATTGAATTCTTCATCTGCCTGTTGACTCCCCCTCCCATGTCTCTCCTTCTGTTCAACACCTTTAATTATACTCTGTACGTCATTGTTTCTTTCCCCCTCTCTACTTTTTCCCTCTTGTCTTTCTTCCTTTCTTTTTCTTAACCAAATTTTGACAGCCATGCCATGGGATTGATCATTCCACACGCCAACATATACTCAACAGTATTATGCTATTCACAATCACCAACATAGAAAACCCTTTCCTTTTTTTCCTTTTTCATTTTATCATTTCCTACTCTTTCATCCATACCCATTTTCATCATTTTTAATCACCTTTTTTAAACATCAACTGTTCCAATTTCCCCTCCTCTATTTTATTTCCATTGAATGTTTTATCAAATGGTAAGCTATATTTTTTAGGCTTTTACGTTTACCAAACAAATGAAAGATAATTTGTGAGGTTTTATTAAATTATAAAGATTAAATTCTAACTTTTACAATGGTAGAGACTAAATATTAATTTACGGACTAAATCTATAATTTAACTTTAATATTAATCGGTCACATGTTAACATGTGAATGTTTGAGCACCATAGATGTTATTCTTCTATTATTATTATTTTTTTTTAAAGAAAAATGTGTGAATCAGTATTTTGAGACATTGACCACTTTAATATAATTCATCCATCAGCATCACCATGATGTCTATTTTTGTTTAATTTCTATGAAGAACGTGTCGTCTGAAAATTGTATTAGGTTGAAAATGATAGTTTCACGTTTAATTGTCCTTATGATTATTTTATAATTTAAAGTTAAACAAGGATTAATCATGATTAATGAGCAACTTGATGTTTTCTTTTTAACAAATCTTTGATCAACCAATTTGACCGATTCTTTCAAAAAGCTCCTCTTTTAGATCATGCAAGTTTCAAAATAAAGTGGTTTTTCAGTCAGGGATACCATTAATAATTAATAAAATAATGATCAATTCTGGCGGTAATTCTTTTTTACCGTTCACACCAAATATTGTTGAAGTAATACTCTCTTGTAAAAAAATGTTTTTTATAATTTTATTTTATGCTAGATTATCGCTTGTCACGTCAAATTTTACTGTAGTTAAATCTTAATAATTATTTTTAAAGATTCGATGGATCGAAGGATATATGGGCTTGCAAACCCTTCTGGGTAGGGGCAAAAGCTGATACGGCCCAAAATGTCAAAACGGGCTGA

mRNA sequence

ATGAAAACAAAAGAATGGGGCTTAATTAAGAAACCCTCCACTGTGGGAAAATTGAAGAAGATTGATTCAGTCGGCAGTAAGGCTGAAAGCGAGCGTTTAGTTTACGCTCAAATAGATATATCATTTATATATGGGCGTCATACGAGTGAAGCACCAGGAACTTTTACCTACCCTTTAGAAAACTTTGGACCCCATGAAAAAAACTTTGAAGAATATGCTTACAACTCCTCTAATTCTTGGTTTGCAATTGAAGGATTCGATGGATCGAAGGATATATGGGCTTGCAAACCCTTCTGGGTAGGGGCAAAAGCTGATACGGCCCAAAATGTCAAAACGGGCTGA

Coding sequence (CDS)

ATGAAAACAAAAGAATGGGGCTTAATTAAGAAACCCTCCACTGTGGGAAAATTGAAGAAGATTGATTCAGTCGGCAGTAAGGCTGAAAGCGAGCGTTTAGTTTACGCTCAAATAGATATATCATTTATATATGGGCGTCATACGAGTGAAGCACCAGGAACTTTTACCTACCCTTTAGAAAACTTTGGACCCCATGAAAAAAACTTTGAAGAATATGCTTACAACTCCTCTAATTCTTGGTTTGCAATTGAAGGATTCGATGGATCGAAGGATATATGGGCTTGCAAACCCTTCTGGGTAGGGGCAAAAGCTGATACGGCCCAAAATGTCAAAACGGGCTGA

Protein sequence

MKTKEWGLIKKPSTVGKLKKIDSVGSKAESERLVYAQIDISFIYGRHTSEAPGTFTYPLENFGPHEKNFEEYAYNSSNSWFAIEGFDGSKDIWACKPFWVGAKADTAQNVKTG

Homology

[Close]

BLAST of ClCG10G021900 vs. NCBI nr
Match: KGN58787.1 (hypothetical protein Csa_002358 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MKTKEWGLIKKPSTVGKLKKIDSVGSKAESERLVYAQIDISFIYGRHTSEAPGTFTYPLE 60
          MKTKEWGLIK+ S VG+LK IDSVGSKA+ ERL YAQID+SFIYG   ++APGTFTYPLE
Sbjct: 1  MKTKEWGLIKQLSAVGRLKMIDSVGSKAQVERLDYAQIDMSFIYGCQMNDAPGTFTYPLE 60

Query: 61 NFGPHEKNFE 71
          NFGPH+K  +
Sbjct: 61 NFGPHKKTLK 70

[Close]

BLAST of ClCG10G021900 vs. ExPASy TrEMBL
Match: A0A0A0LDH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732450 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MKTKEWGLIKKPSTVGKLKKIDSVGSKAESERLVYAQIDISFIYGRHTSEAPGTFTYPLE 60
          MKTKEWGLIK+ S VG+LK IDSVGSKA+ ERL YAQID+SFIYG   ++APGTFTYPLE
Sbjct: 1  MKTKEWGLIKQLSAVGRLKMIDSVGSKAQVERLDYAQIDMSFIYGCQMNDAPGTFTYPLE 60

Query: 61 NFGPHEKNFE 71
          NFGPH+K  +
Sbjct: 61 NFGPHKKTLK 70

The following BLAST results are available for this feature:

BLAST of ClCG10G021900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58787.1	3.5e-20	74.29	hypothetical protein Csa_002358 [Cucumis sativus]	[more]

BLAST of ClCG10G021900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G021900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDH1	1.7e-20	74.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732450 PE=4 SV=1	[more]

BLAST of ClCG10G021900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G021900.2	ClCG10G021900.2	mRNA