ClCG10G021460 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G021460
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr10: 36104790 .. 36105125 (-)
RNA-Seq ExpressionClCG10G021460
SyntenyClCG10G021460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTTGTATTTGTTTCAGAGCCCGGAAGAAGAAGAGCAATCAAACAGATGGGCACAAAGGTGGTCAGAAATTCAGACCGCCACGAGGATACGGCATGGGAAGGGCGGCAGGTGGTGGATCCAGTGCTGGAAATGGTAACTCGACTATTCTGATTGCTCATGTTGGTGGTGTCGCTTTAGCGGCAACATTTGGTTTTGCAGTTGCTGCAGCTGCGGTGGTCGATGGTGGGGAATGGCAGAAGCTATGGTGGTTGAGATTTTGCCGGTTCGGCCATTCATTAAGATCCATCGTCAAGTGCCTTTTTTTTTTTTATTGTCATATCATCTATTGA

mRNA sequence

ATGAATTGTTGTATTTGTTTCAGAGCCCGGAAGAAGAAGAGCAATCAAACAGATGGGCACAAAGGTGGTCAGAAATTCAGACCGCCACGAGGATACGGCATGGGAAGGGCGGCAGGTGGTGGATCCAGTGCTGGAAATGGTAACTCGACTATTCTGATTGCTCATGTTGGTGGTGTCGCTTTAGCGGCAACATTTGGTTTTGCAGTTGCTGCAGCTGCGGTGGTCGATGGTGGGGAATGGCAGAAGCTATGGTGGTTGAGATTTTGCCGGTTCGGCCATTCATTAAGATCCATCGTCAAGTGCCTTTTTTTTTTTTATTGTCATATCATCTATTGA

Coding sequence (CDS)

ATGAATTGTTGTATTTGTTTCAGAGCCCGGAAGAAGAAGAGCAATCAAACAGATGGGCACAAAGGTGGTCAGAAATTCAGACCGCCACGAGGATACGGCATGGGAAGGGCGGCAGGTGGTGGATCCAGTGCTGGAAATGGTAACTCGACTATTCTGATTGCTCATGTTGGTGGTGTCGCTTTAGCGGCAACATTTGGTTTTGCAGTTGCTGCAGCTGCGGTGGTCGATGGTGGGGAATGGCAGAAGCTATGGTGGTTGAGATTTTGCCGGTTCGGCCATTCATTAAGATCCATCGTCAAGTGCCTTTTTTTTTTTTATTGTCATATCATCTATTGA

Protein sequence

MNCCICFRARKKKSNQTDGHKGGQKFRPPRGYGMGRAAGGGSSAGNGNSTILIAHVGGVALAATFGFAVAAAAVVDGGEWQKLWWLRFCRFGHSLRSIVKCLFFFYCHIIY
Homology
BLAST of ClCG10G021460 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 55/78 (70.51%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 4  CICFRA--RKKKSNQTDGHKGGQKFRPPRGYGMGRAAGGGSSAGNGNSTILIAHVGGVAL 63
          CICFR    KKKSNQ  G KG +KFRPPRGY  G AA GGS+ GNGN T+L  H GGV L
Sbjct: 3  CICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAA-GGSTTGNGNLTVLTDHDGGVVL 62

Query: 64 AATFGFAVAAAAVVDGGE 80
          A+TFGFAVAAAAVVD GE
Sbjct: 63 ASTFGFAVAAAAVVDAGE 79

BLAST of ClCG10G021460 vs. NCBI nr
Match: KAG6580518.1 (hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 51/78 (65.38%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 4   CICFRARK--KKSNQTDGHKGGQKFRPPRGYGMGRAAGGGSSAGNGNSTILIAHVGGVAL 63
           CICFR  K  K SNQ  G  G +KFRPPRGY  G AA   S+ GNGN T+L  H GGV L
Sbjct: 57  CICFRGPKEEKNSNQAHGDNGARKFRPPRGYSGGTAA-AASTPGNGNLTVLTDHDGGVVL 116

Query: 64  AATFGFAVAAAAVVDGGE 80
           A+TFGFAVAAAAVVD GE
Sbjct: 117 ASTFGFAVAAAAVVDAGE 133

BLAST of ClCG10G021460 vs. ExPASy TrEMBL
Match: A0A0A0LDL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.1e-15
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 2  NCCICFRARKKK-----SNQTDGHKGGQKFRPPRGYGMGRAAGGGSSAGNGNSTILI-AH 61
          N CICF A +KK     +NQTDGHKGG+KFRPPRG+G GR   GGS AGNGN  +L   H
Sbjct: 3  NYCICFGAGQKKKKSNNNNQTDGHKGGRKFRPPRGHG-GRTGVGGSGAGNGNLAVLTDHH 62

Query: 62 VGGVALAATFGFAVAAAAVVDGGE 80
           GGVA+ AT GFAVAAAAVVD  E
Sbjct: 63 DGGVAMVATLGFAVAAAAVVDVAE 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023528737.13.0e-1670.51loricrin-like [Cucurbita pepo subsp. pepo][more]
KAG6580518.11.4e-1365.38hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDL88.1e-1565.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G021460.2ClCG10G021460.2mRNA