ClCG10G020270 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G020270
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	29 kDa ribonucleoprotein, chloroplastic
Location	CG_Chr10: 35110718 .. 35112830 (+)
RNA-Seq Expression	ClCG10G020270
Synteny	ClCG10G020270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTCTCCAACCTTATCTCAAAACTCGGAAGCCATGTCTGCCTCCGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAACACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTCTCTCTCAATCCTTCTTCAATTCGCCTTCTTTCAAATCCCATTTCCATTTCTTCTGCTGTTCTTCGTTCTCATAGGGTTTCTTCTCCCTTCTCCTCTCGTTTTGTCCGAAATGTCGCCGTTTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGAATCTAGCTACGCTCCTGACCTCAAGCTGTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGAGTTGAGGTACCTTTCCTTGTAGTGTTCTATTAAGTGTTTCTGTTCTCTCGAGAGACCCATTTGCTTTGCCCTAATTTTCGTGATGTTTTTTTGTTCTCTTAAAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAGCGTTGACGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGTAAGTGATTAAACCCCTTTTACGCCAGCTTGATACTCTGCATTATTGCTTTTGGTTATGATTCATTTACTCCTTGGGTAATCAATTGCTGTAACTGTAACTCAAATGAACAATTAGGAAGTCATAGGGCTATCAAGTTTTGAACATCAAATTATGAAAGAGCATTATACGCTTGTAATTTGTGAGAAATCGAGTTTTATGAATATTGCAGTAAAACTGAGTACATTTACAATGCCTCACTCAAGTTTTCCATTAGAGCACGTTTTATATTATTGTCACAGAGAACCCAACCTAAAGATTTGTTCTTGTTCGGTCTTATTTGTTGGGGCAAGACGTATGTAGAGCTTATCTGCTTCCATGCTTTCTTGAGGTGTAATTTTAACGCCAAAAGTTTCATAGGACCTTTGTGATCCAATTACATAGTGTTATCTTTCATTTTCAATCAAAGGGTTTATATTGGATTTGATTCTGGTTGATAATTTTTGGTTAATTCCTCACAGGAACTTGATGGCAGATCATTGAGGGTAAATTATGGACCCCCTCCACCGAAAAGGGATGATTCCTCTTTCCGAGGTTCCAGAAATGCTTCAAGATTTGATAACCCCAACCGTATTCATGTGAGTAACCTTGCTTGGGGTGTTGATGATCTTACACTGGAGAACTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTATGACCGTGAGAGCGGAAGATCTAGGGGCTTTGGTTTCATAACATATAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAACTGTAAGTTCACATTGACCCTTCATTTTTATGCGTTTGTTTTTTAAGTCAGTGCTGCTTTTGTTTATGATGAATCTTGTTATGCTCCCTCATGTTCAATTGAACCTTTTGCCTACTAATTGTTATGGACCAATTGTTACCATGAAGGACCAATTGTTATGGACATGAAACCCTGTTCATATTAATCATGATTTTGTTGTAGCATCTTCACCCTCTAATTTCCCCGATTAATTTCCAATTCATTCCTATGCATTATCTCAAGTTATCATATTTTTCTTATAAAACTCATATCATGCATCGAACTCCCTTTGGAGGTGTAGATGCCATTGCTTAATGATCAAGAAGTGAATGATTTGGAATCTGAGTATCTTTCATATATCTAAGTAAAAATGTGTACATTGCAGGACCTGAGTGGAAGACCTATCCGAGTAACGCAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGCAGCTTTTATTTTTAAAAGAATTGACGTGGTTTTTGGGCTCGTTTATTAACTTTATTTTTGTATGGTCTGTTCTCCGATAGTAAATGGTGCCGAATGATTTAGTGTACTTTCTATATGATTGATGGTATTTGATATATTTTTTTTTTTCCTTTCTGAATTTGCATTCAACTGAGACTTCATATCTGTCAAACAGAAGTCATGAGTTCAATTCGATGCTACCTACTTAGGATTTTCTACG

mRNA sequence

GCCTTCTCCAACCTTATCTCAAAACTCGGAAGCCATGTCTGCCTCCGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAACACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTCTCTCTCAATCCTTCTTCAATTCGCCTTCTTTCAAATCCCATTTCCATTTCTTCTGCTGTTCTTCGTTCTCATAGGGTTTCTTCTCCCTTCTCCTCTCGTTTTGTCCGAAATGTCGCCGTTTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGAATCTAGCTACGCTCCTGACCTCAAGCTGTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGAGTTGAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAGCGTTGACGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTTGATGGCAGATCATTGAGGGTAAATTATGGACCCCCTCCACCGAAAAGGGATGATTCCTCTTTCCGAGGTTCCAGAAATGCTTCAAGATTTGATAACCCCAACCGTATTCATGTGAGTAACCTTGCTTGGGGTGTTGATGATCTTACACTGGAGAACTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTATGACCGTGAGAGCGGAAGATCTAGGGGCTTTGGTTTCATAACATATAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAACTGACCTGAGTGGAAGACCTATCCGAGTAACGCAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGCAGCTTTTATTTTTAAAAGAATTGACGTGGTTTTTGGGCTCGTTTATTAACTTTATTTTTGTATGGTCTGTTCTCCGATAGTAAATGGTGCCGAATGATTTAGTGTACTTTCTATATGATTGATGGTATTTGATATATTTTTTTTTTTCCTTTCTGAATTTGCATTCAACTGAGACTTCATATCTGTCAAACAGAAGTCATGAGTTCAATTCGATGCTACCTACTTAGGATTTTCTACG

Coding sequence (CDS)

ATGTCTGCCTCCGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAACACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTCTCTCTCAATCCTTCTTCAATTCGCCTTCTTTCAAATCCCATTTCCATTTCTTCTGCTGTTCTTCGTTCTCATAGGGTTTCTTCTCCCTTCTCCTCTCGTTTTGTCCGAAATGTCGCCGTTTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGAATCTAGCTACGCTCCTGACCTCAAGCTGTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGAGTTGAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAGCGTTGACGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTTGATGGCAGATCATTGAGGGTAAATTATGGACCCCCTCCACCGAAAAGGGATGATTCCTCTTTCCGAGGTTCCAGAAATGCTTCAAGATTTGATAACCCCAACCGTATTCATGTGAGTAACCTTGCTTGGGGTGTTGATGATCTTACACTGGAGAACTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTATGACCGTGAGAGCGGAAGATCTAGGGGCTTTGGTTTCATAACATATAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAACTGACCTGAGTGGAAGACCTATCCGAGTAACGCAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGA

Protein sequence

MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSSRFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFRGSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITYNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF

Homology

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BLAST of ClCG10G020270 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 501.9 bits (1291), Expect = 3.5e-138
Identity = 260/277 (93.86%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASAASLTLS+LTL TLSLSNPKIKLFSLNPSS RLLSNP SISS VLRS RVS PFSS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEAD +E+SYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP+RDDSSFR
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRNASRFDNPNR+HVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESG+SRGFGF+T+
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSLDG +LSGRPIRVTQAEARPPRRQF
Sbjct: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 277

[Close]

BLAST of ClCG10G020270 vs. NCBI nr
Match: XP_008442686.1 (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK25133.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 479.6 bits (1233), Expect = 1.9e-131
Identity = 253/277 (91.34%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASAASLTLSSLTL TLSLSNPK KLFSLNPSS   L NPISISS VL SHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGD+S YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRNASRFDN NR+HVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SGRSRGFGF+TY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G DL GR IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

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BLAST of ClCG10G020270 vs. NCBI nr
Match: XP_004137828.1 (29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetical protein Csa_002481 [Cucumis sativus])

HSP 1 Score: 476.5 bits (1225), Expect = 1.6e-130
Identity = 251/278 (90.29%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNP-SSIRLLSNPISISSAVLRSHRVSSPFS 60
           MSASAASLTL SLTL TLS SNPK KLFSLNP SSIRLLSNPISISS +L SHRVS PFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGD+SSYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFIT 240
           RGSRNASRFDN NR+HVSNLAWGVDDLTLENLFRE GNV+EAKVVYDR+SG+SRGFGF+T
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSLDG DL GRPIRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

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BLAST of ClCG10G020270 vs. NCBI nr
Match: XP_023528633.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.4 bits (1139), Expect = 1.5e-120
Identity = 230/277 (83.03%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASA S TLS  TL TLSLSNPKIKLF LNPSSIRLLSNPIS+SS VLRS RVS P SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+DGDESSYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPPKRDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRN+S FD PNR+HVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESGRSRGFGF+T+
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDG DL+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of ClCG10G020270 vs. NCBI nr
Match: XP_022984093.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 443.0 bits (1138), Expect = 1.9e-120
Identity = 229/277 (82.67%), Postives = 247/277 (89.17%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASA S TLS  TL TLSLSNPKIKLF LNPSSIRLLSNPIS+SS VLRS RVS+P SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSTPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+DGDESSYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEV+YDK TGRSRGF FVTMS+ DE EAAAQQFNGYEL+GRSLRVN GPPPPKRDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSNADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRN+S FD PNR+HVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESGRSRGFGF+T+
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDG DL+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of ClCG10G020270 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.7e-87
Identity = 186/286 (65.03%), Postives = 215/286 (75.17%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNP-----KIKLFSLNPSSIRLLSNPISISSAVLRSHRVS 60
           M++SA+SL   SLT  TL L  P      +  FSL PSS+ L     S+SS+       S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNL-----SLSSS-------S 60

Query: 61  SPFSSRFVRNVAVSSDYDQEEDTLEADG---DESSYAPDLKLFVGNLPFSVDSAQLAGLF 120
           S FSSRFVR V + SD+DQ ED  + D    +E +++PDLK+FVGNLPFS DSA LA LF
Sbjct: 61  SCFSSRFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           E AG VE VEVIYDK TGRSRGFGFVTMSS +EVEAA QQFNGYELDGR+LRVN GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KRDDSSFR-GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGR 240
           KR++SSFR GSR    FD+ NR++V NLAWGVD   LE LF E G VV+AKVVYDR+SGR
Sbjct: 181 KRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 240

Query: 241 SRGFGFITYNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           SRGFGF+TY+SAEEVNNAI+SLDG DL+GR IRV+ AEARPPRRQF
Sbjct: 241 SRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

[Close]

BLAST of ClCG10G020270 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-84
Identity = 184/293 (62.80%), Postives = 212/293 (72.35%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNP-----KIKLFSLNPSSIRL-LSNPISISSAVLRSHRV 60
           M++SA+SL   SLT  TL L  P      +  FSL PSS+ L LS+P             
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSP------------- 60

Query: 61  SSPFSSRFVRNVAVSSDYDQEEDTLEAD---GDESSYAPDLKLFVGNLPFSVDSAQLAGL 120
           SS FSSRFVR V +  D+DQ ED  + D    +E +++PDLK+FVGNL FS DSA LA L
Sbjct: 61  SSCFSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAEL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FE AG VE VEVIYDK TGRSRGFGFVTMSS +EVEAA QQFNGYELDGR+LRVN GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PKRDDSSFR-------GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVV 240
            KR++SSFR       GSR    FD+ NR++V NLAWGVD   LE LF E G VV+AKVV
Sbjct: 181 EKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVV 240

Query: 241 YDRESGRSRGFGFITYNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           YDR+SGRSRGFGF+TY+SAEEVNNAI+SLDG DL+GR IRV+ AEARPPRRQF
Sbjct: 241 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

[Close]

BLAST of ClCG10G020270 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 6.3e-82
Identity = 178/295 (60.34%), Postives = 219/295 (74.24%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTL--SLSNPKIKLFSLNPS-SIRLLSNPISISSAVLRSHRVSSP 60
           M+ASA+SL LSS    +L   +S P   +  L+PS S +L S+ +S S A     + +SP
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRP-ASVSLLSPSLSFKLNSDSVSFSIAA----KWNSP 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLE--ADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESA 120
            +SRF RNVA++S+++ EED     A   E S++ DLKLFVGNLPF+VDSAQLA LFESA
Sbjct: 61  -ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 120

Query: 121 GQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRD 180
           G VE VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYELDGR LRVN GPPPPKR+
Sbjct: 121 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 180

Query: 181 DSSFRGSRNA-------------SRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAK 240
           D   RG R++             S   + NR++V NL+WGVDD+ LE+LF E G VVEA+
Sbjct: 181 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 240

Query: 241 VVYDRESGRSRGFGFITYNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           V+YDR+SGRS+GFGF+TY+S++EV NAI+SLDG DL GR IRV++AEARPPRRQ+
Sbjct: 241 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of ClCG10G020270 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-74
Identity = 174/343 (50.73%), Postives = 212/343 (61.81%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   +S     + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of ClCG10G020270 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.9e-74
Identity = 166/298 (55.70%), Postives = 203/298 (68.12%), Query Frame = 0


Query: 2   SASAASLTLSSLTLNTLSLSNPK--IKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFS 61
           S+S +SL    +T  T S   P   +  FSL  SS+ L     S+SS+ +       PF 
Sbjct: 3   SSSVSSLQFLFVTSQTPSSLKPNSTLSFFSLPSSSLNL-----SLSSSSIGHSASIKPFE 62

Query: 62  SRFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 121
           S F   VA+ SD+DQ ED +E   ++  ++ DLKLFVGNLPFSVDSA LAGLFE AG VE
Sbjct: 63  SSFSTRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 122

Query: 122 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSF 181
            VEVIYDK +GRSRGFGFVTMS+ +EVEAA QQFNGYE+DGR++RVN GP P KR++SSF
Sbjct: 123 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 182

Query: 182 RGSRNAS--------------------RFDNPNRIHVSNLAWGVDDLTLENLFREHGNVV 241
            G R  +                      D+ NR++V NL+WGVDDL L+ LF E GNVV
Sbjct: 183 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 242

Query: 242 EAKVVYDRESGRSRGFGFITYNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           +AKVVYDR+SGRSRGFGF+TY+SA+EVN+AI SL+G DL GR IRV+ AE R PRRQF
Sbjct: 243 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292

[Close]

BLAST of ClCG10G020270 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.1e-132
Identity = 253/277 (91.34%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASAASLTLSSLTL TLSLSNPK KLFSLNPSS   L NPISISS VL SHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGD+S YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRNASRFDN NR+HVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SGRSRGFGF+TY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G DL GR IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of ClCG10G020270 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.1e-132
Identity = 253/277 (91.34%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASAASLTLSSLTL TLSLSNPK KLFSLNPSS   L NPISISS VL SHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGD+S YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRNASRFDN NR+HVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SGRSRGFGF+TY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G DL GR IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of ClCG10G020270 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.7e-131
Identity = 251/278 (90.29%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNP-SSIRLLSNPISISSAVLRSHRVSSPFS 60
           MSASAASLTL SLTL TLS SNPK KLFSLNP SSIRLLSNPISISS +L SHRVS PFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGD+SSYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFIT 240
           RGSRNASRFDN NR+HVSNLAWGVDDLTLENLFRE GNV+EAKVVYDR+SG+SRGFGF+T
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSLDG DL GRPIRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of ClCG10G020270 vs. ExPASy TrEMBL
Match: A0A6J1J9K2 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482509 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 9.4e-121
Identity = 229/277 (82.67%), Postives = 247/277 (89.17%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           MSASA S TLS  TL TLSLSNPKIKLF LNPSSIRLLSNPIS+SS VLRS RVS+P SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSTPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+DGDESSYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEV+YDK TGRSRGF FVTMS+ DE EAAAQQFNGYEL+GRSLRVN GPPPPKRDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSNADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
           GSRN+S FD PNR+HVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESGRSRGFGF+T+
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDG DL+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of ClCG10G020270 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.6e-120
Identity = 231/277 (83.39%), Postives = 249/277 (89.89%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSPFSS 60
           M+ASA  LTLSSLT  TLS SNPK +LFSLNPSSI   SNPISIS+ VLRS RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGD+SSYAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDK TGRSRGFGFVTMS+V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRGFGFITY 240
            S+NAS FDN N +HVSNLAWGVDDLTLENLFRE GNVV+AKVVYDR+SGRSRGFGF+TY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           +SAEEVNNAIQSLDG DL+GR IRVTQAEAR PRRQF
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

[Close]

BLAST of ClCG10G020270 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 305.4 bits (781), Expect = 4.5e-83
Identity = 178/295 (60.34%), Postives = 219/295 (74.24%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTL--SLSNPKIKLFSLNPS-SIRLLSNPISISSAVLRSHRVSSP 60
           M+ASA+SL LSS    +L   +S P   +  L+PS S +L S+ +S S A     + +SP
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRP-ASVSLLSPSLSFKLNSDSVSFSIAA----KWNSP 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLE--ADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESA 120
            +SRF RNVA++S+++ EED     A   E S++ DLKLFVGNLPF+VDSAQLA LFESA
Sbjct: 61  -ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 120

Query: 121 GQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRD 180
           G VE VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYELDGR LRVN GPPPPKR+
Sbjct: 121 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 180

Query: 181 DSSFRGSRNA-------------SRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAK 240
           D   RG R++             S   + NR++V NL+WGVDD+ LE+LF E G VVEA+
Sbjct: 181 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 240

Query: 241 VVYDRESGRSRGFGFITYNSAEEVNNAIQSLDGTDLSGRPIRVTQAEARPPRRQF 278
           V+YDR+SGRS+GFGF+TY+S++EV NAI+SLDG DL GR IRV++AEARPPRRQ+
Sbjct: 241 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of ClCG10G020270 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 281.2 bits (718), Expect = 9.1e-76
Identity = 174/343 (50.73%), Postives = 212/343 (61.81%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   +S     + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of ClCG10G020270 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 281.2 bits (718), Expect = 9.1e-76
Identity = 174/343 (50.73%), Postives = 212/343 (61.81%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   +S     + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of ClCG10G020270 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 281.2 bits (718), Expect = 9.1e-76
Identity = 174/343 (50.73%), Postives = 212/343 (61.81%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   +S     + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASRFDNPNRIHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of ClCG10G020270 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 268.9 bits (686), Expect = 4.7e-72
Identity = 174/364 (47.80%), Postives = 212/364 (58.24%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLNTLSLSNPKIKLFSLNPSSIRLLSNPISISSAVLRSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   +S     + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGY---------------- 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGY                
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIR 180

Query: 181 -----ELDGRSLRVNYGPPPPKRDDSSFRGSR---------------------------- 240
                E +GR LRVN GPPPPKR++S  RG R                            
Sbjct: 181 VLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGY 240

Query: 241 ------------------------------NASRFDNPNRIHVSNLAWGVDDLTLENLFR 278
                                         + S   + NR++V NL+WGVDD+ LENLF 
Sbjct: 241 GSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFN 300

The following BLAST results are available for this feature:

BLAST of ClCG10G020270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905951.1	3.5e-138	93.86	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_008442686.1	1.9e-131	91.34	PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 ...	[more]
XP_004137828.1	1.6e-130	90.29	29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetic...	[more]
XP_023528633.1	1.5e-120	83.03	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984093.1	1.9e-120	82.67	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of ClCG10G020270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	1.7e-87	65.03	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	1.0e-84	62.80	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	6.3e-82	60.34	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q43349	1.3e-74	50.73	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	4.9e-74	55.70	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of ClCG10G020270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQA3	9.1e-132	91.34	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	9.1e-132	91.34	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A0A0LAY6	7.7e-131	90.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A6J1J9K2	9.4e-121	82.67	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F601	1.6e-120	83.39	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of ClCG10G020270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	4.5e-83	60.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	9.1e-76	50.73	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	9.1e-76	50.73	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	9.1e-76	50.73	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	4.7e-72	47.80	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 193..266 e-value: 1.2E-25 score: 101.1 coord: 93..166 e-value: 5.9E-28 score: 108.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 195..264 e-value: 9.3E-18 score: 63.8 coord: 94..164 e-value: 7.4E-20 score: 70.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 192..270 score: 19.331329
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.58716
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 175..276 e-value: 5.5E-27 score: 96.6 coord: 51..174 e-value: 9.8E-29 score: 102.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..187
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..274
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..274
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 93..166 e-value: 5.85176E-34 score: 116.559
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 187..276
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G020270.1	ClCG10G020270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding