ClCG10G018680 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G018680
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 33715888 .. 33716217 (-)
RNA-Seq Expression	ClCG10G018680
Synteny	ClCG10G018680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGTGGCTGCGATGATATTTTCGAGTTCGTTAGCTCAACTCGTCGCGAACTATGAACAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTCCGACTCTTCTCTGACGGTAGCAACGATGGAGAAGTAAACTACAAAAATGATAACCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA

mRNA sequence

ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGTGGCTGCGATGATATTTTCGAGTTCGTTAGCTCAACTCGTCGCGAACTATGAACAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTCCGACTCTTCTCTGACGGTAGCAACGATGGAGAAGTAAACTACAAAAATGATAACCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA

Coding sequence (CDS)

ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGTGGCTGCGATGATATTTTCGAGTTCGTTAGCTCAACTCGTCGCGAACTATGAACAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTCCGACTCTTCTCTGACGGTAGCAACGATGGAGAAGTAAACTACAAAAATGATAACCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA

Protein sequence

MEGKKVALVVVVVAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSNDGEVNYKNDNPRKMMKAAAPPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCVDF

Homology

[Close]

BLAST of ClCG10G018680 vs. NCBI nr
Match: KGN59161.1 (hypothetical protein Csa_002402 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 3.5e-25
Identity = 70/113 (61.95%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 1   MEGKKVALVVVVVAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSNDGEVNYKN 60
           MEGKK+ALVV++V   IF+ SLAQ   N ++RQ E+NEN  + ++LFSDGSND  V YK+
Sbjct: 1   MEGKKLALVVLMVMT-IFTCSLAQDALNDDKRQFEKNEN-KEYIQLFSDGSNDKGVRYKD 60

Query: 61  DNPRKMMKAA------APPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           D  RKMMK A       PP P CFGNFCGGGLL C EPC CNIPMGA RG CV
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

[Close]

BLAST of ClCG10G018680 vs. NCBI nr
Match: TYK30388.1 (hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.8e-22
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MEGKKVALVVVVVAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSND-GE-VNY 60
           MEGKK+AL VVV+  MIF+  LA +  N E+RQ EENEN  + ++LFSD SN+ GE V Y
Sbjct: 1   MEGKKLAL-VVVMTTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKY 60

Query: 61  KNDNPRKMMKAA-----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           KND  RKM+K A      PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61  KNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

[Close]

BLAST of ClCG10G018680 vs. NCBI nr
Match: KAA0043852.1 (hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 13  VAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSND-GE-VNYKNDNPRKMMKAA 72
           +  MIF+  LA +  N E+RQ EENEN  + ++LFSD SN+ GE V YKND  RKM+K A
Sbjct: 1   MTTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEA 60

Query: 73  -----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
                 PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61  PTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

[Close]

BLAST of ClCG10G018680 vs. NCBI nr
Match: KAG6580718.1 (hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-15
Identity = 59/117 (50.43%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 1   MEGKKVALVVVVVAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSNDGEVNYKN 60
           MEGKKVALVV++V  M F+S+LA+                    +L +DGSND   + + 
Sbjct: 1   MEGKKVALVVLLV-TMAFTSALAR-------------------NQLIADGSNDRAGSDEY 60

Query: 61  DNPRKMMKAA-------AP-PRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCVDF 110
           D   KM + A       AP PRPSCFGNFCGGGLLPC EPC C IPMG+ RG CVDF
Sbjct: 61  DELIKMAEGAPEAAPEPAPSPRPSCFGNFCGGGLLPCDEPCFCFIPMGSQRGSCVDF 97

[Close]

BLAST of ClCG10G018680 vs. ExPASy TrEMBL
Match: A0A0A0LGQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 70/113 (61.95%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 1   MEGKKVALVVVVVAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSNDGEVNYKN 60
           MEGKK+ALVV++V   IF+ SLAQ   N ++RQ E+NEN  + ++LFSDGSND  V YK+
Sbjct: 1   MEGKKLALVVLMVMT-IFTCSLAQDALNDDKRQFEKNEN-KEYIQLFSDGSNDKGVRYKD 60

Query: 61  DNPRKMMKAA------APPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           D  RKMMK A       PP P CFGNFCGGGLL C EPC CNIPMGA RG CV
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

[Close]

BLAST of ClCG10G018680 vs. ExPASy TrEMBL
Match: A0A5D3E3L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9509G00010 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MEGKKVALVVVVVAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSND-GE-VNY 60
           MEGKK+AL VVV+  MIF+  LA +  N E+RQ EENEN  + ++LFSD SN+ GE V Y
Sbjct: 1   MEGKKLAL-VVVMTTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKY 60

Query: 61  KNDNPRKMMKAA-----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           KND  RKM+K A      PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61  KNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

[Close]

BLAST of ClCG10G018680 vs. ExPASy TrEMBL
Match: A0A5A7TKL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001870 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.1e-19
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 13  VAAMIFSSSLAQLVANYEQRQLEENENGNDLLRLFSDGSND-GE-VNYKNDNPRKMMKAA 72
           +  MIF+  LA +  N E+RQ EENEN  + ++LFSD SN+ GE V YKND  RKM+K A
Sbjct: 1   MTTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEA 60

Query: 73  -----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
                 PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61  PTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

The following BLAST results are available for this feature:

BLAST of ClCG10G018680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59161.1	3.5e-25	61.95	hypothetical protein Csa_002402 [Cucumis sativus]	[more]
TYK30388.1	4.8e-22	60.87	hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa]	[more]
KAA0043852.1	1.9e-18	58.25	hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa]	[more]
KAG6580718.1	4.3e-15	50.43	hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG10G018680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G018680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGQ3	1.7e-25	61.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1	[more]
A0A5D3E3L2	2.3e-22	60.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TKL8	9.1e-19	58.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG10G018680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G018680.1	ClCG10G018680.1	mRNA