ClCG10G016020 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAGCACCCCTAACGATTTCTCGGTCGTCATTCTCCCTTCCGATGGCGGCATCGATTCGCGGCCACTTTTGCCTGACAAAGACAAAGAGTCTGAAGAGGCTGACAATTGGCACGATTGTTCTCAAAACCTTTCCTCCGATGAGGACTTCTCCGATCTCGATCTCTTGCAGTTTGTCCGTCTTGAGGGCTCCGACAAGGCCGGGAATCGCATCCTCCGCGTCGTCGGAAAGTACTTCCCTGGTAAAGAAACTATTCTGTATTACTATTGACTTTTGCGGTAATTGAAATTGATTGAACGATTACTTTTTCGTTCATTAGTTCTTCTATACGTTGCACTCTTTTGCTTCACTAGACAGTATATACTTCAGCCTAATCATTTGGTCGGAGCTGTCTAGTGTCTATCAATAATTGAGATGGATTTTAATTTCATTTTAATGGGTTGATGCGTTGTGTTAATGTTCTTACAAGTTTCATATATTTTTTTACTATTTAATCCTGTATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTAAATTGCTGGGTCCTTGGAACTTTAACTAAATTCCTAATTGGGACTGAACTTTCAATTTTGTATCTAAATAAATCATCTTCGTCAATTGTTTTAGTTTACAATTTTGAGACGCACTGGAGACTGAATTGGAAGTTGGACTAATTAGACCCAACAAAGGTTCATGATGAAAGCTAACCTCTTCTTAATAGTAGTGTTCTTAGTCTATAGCTTCTTAATTTATTGACGAACAATTCATGGCCACATCTTCTCTTGACATCACCAAAAAGTAGATAGGTCTAATGGTTATAGCACAAACTTCTGTTTACGAATTTTGTATAGTATTTTCTTGTATAAGAATTCAGATAACTCCAAATTGTTTTCTAAATATGAGATACGCTAGTGCACCTACTAACCCATCTTTTTTTCTATGATTTCTGGTTTAGTGGTCACTTTGAACTTGGTTTCTTGTATTTTGAGCAATATCCTCTTTTCATTATAACAATTAAAAGTTTTTCAAAAAAGAAAATTTGTTTTCTAAATATAAAATTTCTTCTAACACAGCTGTGGTTGTAAGTGGAGAGCGGCTGAAGAAATATATCTTCCATAAATTCCAGAGCGAATTGTCTGAGGGTCCATTTTGCATTGTGTACTTTCATACTACCGCCCAGAAGGATGATAATTGTCCAGGCTTGACCATCCTGAGGTGGATTTATGAAGAACTTCCATCTGATTACAAGGATAGACTTCAAGTTCTCTACTTTGTACATCCTGGTCTCCGTTCAAGGCTCGTCTTGGCGACTTTTGGCCGTTTTTTCTTAAGTGGCGGGTGAGTGCGTTTGCTATACTGGTTTTCAAATGTAACTACCTTGTTGAATTTGTTGAGATTTGATTATTTTTCTTTAATTAAATTAAGGTTTAACATTATTGAAACTGTTTTTTTTTTATAATTTTTCAGTTTTAGGTTGATGGATAGGATTGAAACTAGGTTTATAATTAAATTAAGGTTTAAAACTAGTTTATTTATTTTAGTAATAGCACTTCTTGTGTTAACTTCTTGCCTGGTACGGTGCAGAAAAACTAGTATGGTTGATCCTTGAACAGGAGCACTTTTGGATAGTTCATTTCTCTATGCCAAAACTGCATTGCTCATTAGTCATAATATCAAATGTTTTGTTAACTTCTCTCTCTCACTCTCTCTTATTATTGATGTATTCTTTAAGAAAATAGGAAGGGAAGAAACAGAAAACCATTCTTCTTTGTAGGGATGTGATCTACACGGTATCCCTGAGAAATTATTAGTCTTTGAAAAGTTTTCTTCCCCCAATTCTTAAAAGTAGCTTACTAGAAAATATAATCTTTAGTAGTGGGAAGAACCAGTGGTACGACTGATTATGGTTGTTTGCAACCTTGAAATTTTGTGCTATCCGTTTCCTCTAATGCTGTATTAACATATATCTCGAGTAATTGATGCTTCACATTGTGTAATTTGTTTGATAAGATTTATTCTCTTTTGATAGATTGTACTGGAAAATCAAGTATGTGAGCCGCCTTCAGTATCTGTCAGAAGATATAAAAAAGGGAGAGGTTGAAATTCCTGATTTCGTGAAAAGTCACGACGAAGTTCTTGAACACAGACCACTGACAGATTACGGCATAGAACCTGATTCCCTCAACGTCACTGAGGCACCTTATTCTGCCAACTCCTTTGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGACCTAGTAAGCTTGGTTAAAGAAGTTGTACTTGATCTTAGGCAACTCCAAGGCTTGTGGGCAATTAACACGAGGCATGGCTAAACAATAAAATATTTGTACATTCTGATTGTGCTGTGTTTTGTAGCTTGTATTAGAACTTCTTTAGCGTTGCTTGTAAACTAAAGGGAATGTTATTTATGATAAGCTATCGAGGTTTGATGCTTGTTTATTTAACCTTACCAGCTGGTTTAAATATTTAATTGTCTTGAAAGTGAGCTCGTGTTCTCCAGTATGGTTGTAGTTGATAGAGTCCAACATCTTCTGCTATGCATCATTGCACTTGCTTTGAGTATTAGAAATTTTGGATATGAAGGATTATTGTAGTACCGTATAGGTCTGGTCTTTATGGTTGTGTTTCATATTAAACTTTGCTTGTAATTTCCCCCCTCACCGAGATGATCTTGTTTGTGTCATATAATGCGAAGAGATATTATGGACCTCACGTCTATTCACCCTAAGATGTATTTAGGGTGAGTTTGATATGACTTTCGAAAAGGTAGTTCAACCTATAGAACCGATTCTGTTCAAGTACGGTCGTGAGTACAAATATTTTCTTTTAGCTTATTCCAAGCATTTTTCAAAACTTTTATAAAACTATAAGAACTCTGAAAGGTACTTCTAGAGTAAGTATTGCTCTAAGAAAAAGTACGTACTTCGCAGATAATTCACATTGAGATCGAGGCATTTGAATTTCCTGTTTTCAATTGGCTATGTTTTTCTACATTGCAAGGGGCAAGAAAATTCAAAGGCTACTGGCCGAAATGTGGTTTATGGATGATTTTGTAGTAATGGCCTTTCAAATTACCTAATTTCTGTCTCGACTCTAGTAACAGCATTCGATGTAACAGGTCTTCAGAGTAAAGATTCAGGGCTGTAAGTATTTGACAAACTTGAAAATTCCCTTGGATGTTTATTTTCCTTCACTCTGTTTATGTAAATTATTCATCATGTTCTTTGTTAGGTGATATTATTTTGGTTTTGGATTATTTTCGTAGTGAATTTTCTTGTACTGAAGGAGGAAGAACCAAGAGACATAATTTGTAAACAGAGTTAAAATGAAGAAGACCCCGTGCAATTTAGGTGTCAGATTGGATCACCCAGTTTATTGGAAGAAGAATAAGCAGAATGCAGAAGCCAAGGAAGGTGAGTTCAAATATAACAGTGACCAAAAGCTTTAA ATGGGCAGCACCCCTAACGATTTCTCGGTCGTCATTCTCCCTTCCGATGGCGGCATCGATTCGCGGCCACTTTTGCCTGACAAAGACAAAGAGTCTGAAGAGGCTGACAATTGGCACGATTGTTCTCAAAACCTTTCCTCCGATGAGGACTTCTCCGATCTCGATCTCTTGCAGTTTGTCCGTCTTGAGGGCTCCGACAAGGCCGGGAATCGCATCCTCCGCGTCGTCGGAAAGTACTTCCCTGCTGTGGTTGTAAGTGGAGAGCGGCTGAAGAAATATATCTTCCATAAATTCCAGAGCGAATTGTCTGAGGGTCCATTTTGCATTGTGTACTTTCATACTACCGCCCAGAAGGATGATAATTGTCCAGGCTTGACCATCCTGAGGTGGATTTATGAAGAACTTCCATCTGATTACAAGGATAGACTTCAAGTTCTCTACTTTGTACATCCTGGTCTCCGTTCAAGGCTCGTCTTGGCGACTTTTGGCCGTTTTTTCTTAAGTGGCGGATTGTACTGGAAAATCAAGTATGTGAGCCGCCTTCAGTATCTGTCAGAAGATATAAAAAAGGGAGAGGTTGAAATTCCTGATTTCGTGAAAAGTCACGACGAAGTTCTTGAACACAGACCACTGACAGATTACGGCATAGAACCTGATTCCCTCAACGTCACTGAGGCACCTTATTCTGCCAACTCCTTTGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGACCTATAATGGCCTTTCAAATTACCTAATTTCTGTCTCGACTCTAGTAACAGCATTCGATGTAACAGGTCTTCAGAGTAAAGATTCAGGGCTAGTTAAAATGAAGAAGACCCCGTGCAATTTAGGTGTCAGATTGGATCACCCAGTTTATTGGAAGAAGAATAAGCAGAATGCAGAAGCCAAGGAAGGTGAGTTCAAATATAACAGTGACCAAAAGCTTTAA ATGGGCAGCACCCCTAACGATTTCTCGGTCGTCATTCTCCCTTCCGATGGCGGCATCGATTCGCGGCCACTTTTGCCTGACAAAGACAAAGAGTCTGAAGAGGCTGACAATTGGCACGATTGTTCTCAAAACCTTTCCTCCGATGAGGACTTCTCCGATCTCGATCTCTTGCAGTTTGTCCGTCTTGAGGGCTCCGACAAGGCCGGGAATCGCATCCTCCGCGTCGTCGGAAAGTACTTCCCTGCTGTGGTTGTAAGTGGAGAGCGGCTGAAGAAATATATCTTCCATAAATTCCAGAGCGAATTGTCTGAGGGTCCATTTTGCATTGTGTACTTTCATACTACCGCCCAGAAGGATGATAATTGTCCAGGCTTGACCATCCTGAGGTGGATTTATGAAGAACTTCCATCTGATTACAAGGATAGACTTCAAGTTCTCTACTTTGTACATCCTGGTCTCCGTTCAAGGCTCGTCTTGGCGACTTTTGGCCGTTTTTTCTTAAGTGGCGGATTGTACTGGAAAATCAAGTATGTGAGCCGCCTTCAGTATCTGTCAGAAGATATAAAAAAGGGAGAGGTTGAAATTCCTGATTTCGTGAAAAGTCACGACGAAGTTCTTGAACACAGACCACTGACAGATTACGGCATAGAACCTGATTCCCTCAACGTCACTGAGGCACCTTATTCTGCCAACTCCTTTGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGACCTATAATGGCCTTTCAAATTACCTAATTTCTGTCTCGACTCTAGTAACAGCATTCGATGTAACAGGTCTTCAGAGTAAAGATTCAGGGCTAGTTAAAATGAAGAAGACCCCGTGCAATTTAGGTGTCAGATTGGATCACCCAGTTTATTGGAAGAAGAATAAGCAGAATGCAGAAGCCAAGGAAGGTGAGTTCAAATATAACAGTGACCAAAAGCTTTAA MGSTPNDFSVVILPSDGGIDSRPLLPDKDKESEEADNWHDCSQNLSSDEDFSDLDLLQFVRLEGSDKAGNRILRVVGKYFPAVVVSGERLKKYIFHKFQSELSEGPFCIVYFHTTAQKDDNCPGLTILRWIYEELPSDYKDRLQVLYFVHPGLRSRLVLATFGRFFLSGGLYWKIKYVSRLQYLSEDIKKGEVEIPDFVKSHDEVLEHRPLTDYGIEPDSLNVTEAPYSANSFGRYEERWMSRQYMTYNGLSNYLISVSTLVTAFDVTGLQSKDSGLVKMKKTPCNLGVRLDHPVYWKKNKQNAEAKEGEFKYNSDQKL Homology
BLAST of ClCG10G016020 vs. NCBI nr
Match: XP_038905531.1 (ganglioside-induced differentiation-associated protein 2 [Benincasa hispida]) HSP 1 Score: 496.5 bits (1277), Expect = 1.7e-136 Identity = 239/247 (96.76%), Postives = 242/247 (97.98%), Query Frame = 0
BLAST of ClCG10G016020 vs. NCBI nr
Match: XP_008443288.1 (PREDICTED: rho GTPase-activating protein 68F [Cucumis melo] >KAA0053862.1 rho GTPase-activating protein 68F [Cucumis melo var. makuwa] >TYK25541.1 rho GTPase-activating protein 68F [Cucumis melo var. makuwa]) HSP 1 Score: 491.1 bits (1263), Expect = 7.2e-135 Identity = 237/247 (95.95%), Postives = 241/247 (97.57%), Query Frame = 0
BLAST of ClCG10G016020 vs. NCBI nr
Match: XP_004136651.3 (rho GTPase-activating protein 68F [Cucumis sativus] >KGN59625.2 hypothetical protein Csa_001773 [Cucumis sativus]) HSP 1 Score: 489.6 bits (1259), Expect = 2.1e-134 Identity = 234/247 (94.74%), Postives = 242/247 (97.98%), Query Frame = 0
BLAST of ClCG10G016020 vs. NCBI nr
Match: XP_022935085.1 (ganglioside-induced differentiation-associated protein 2 [Cucurbita moschata] >XP_023527462.1 ganglioside-induced differentiation-associated protein 2 [Cucurbita pepo subsp. pepo] >KAG6580896.1 hypothetical protein SDJN03_20898, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017652.1 hypothetical protein SDJN02_19518, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 472.2 bits (1214), Expect = 3.4e-129 Identity = 229/248 (92.34%), Postives = 237/248 (95.56%), Query Frame = 0
BLAST of ClCG10G016020 vs. NCBI nr
Match: KAG6580899.1 (hypothetical protein SDJN03_20901, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 472.2 bits (1214), Expect = 3.4e-129 Identity = 229/248 (92.34%), Postives = 237/248 (95.56%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy Swiss-Prot
Match: Q5CZL1 (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis OX=8364 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 5.9e-15 Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy Swiss-Prot
Match: Q5XGM5 (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis OX=8355 PE=2 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.2e-14 Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy Swiss-Prot
Match: Q66HX8 (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio OX=7955 GN=gdap2 PE=2 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.5e-13 Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy Swiss-Prot
Match: Q9DBL2 (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus OX=10090 GN=Gdap2 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.2e-13 Identity = 61/209 (29.19%), Postives = 95/209 (45.45%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy Swiss-Prot
Match: Q66H63 (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus OX=10116 GN=Gdap2 PE=2 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.5e-13 Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy TrEMBL
Match: A0A5D3DPF9 (Rho GTPase-activating protein 68F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006930 PE=4 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 3.5e-135 Identity = 237/247 (95.95%), Postives = 241/247 (97.57%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy TrEMBL
Match: A0A1S3B7Q3 (rho GTPase-activating protein 68F OS=Cucumis melo OX=3656 GN=LOC103486907 PE=4 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 3.5e-135 Identity = 237/247 (95.95%), Postives = 241/247 (97.57%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy TrEMBL
Match: A0A0A0LEY6 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822210 PE=4 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 8.5e-134 Identity = 233/247 (94.33%), Postives = 241/247 (97.57%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy TrEMBL
Match: A0A6J1F9L3 (ganglioside-induced differentiation-associated protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111442061 PE=4 SV=1) HSP 1 Score: 472.2 bits (1214), Expect = 1.7e-129 Identity = 229/248 (92.34%), Postives = 237/248 (95.56%), Query Frame = 0
BLAST of ClCG10G016020 vs. ExPASy TrEMBL
Match: A0A6J1J3J8 (ganglioside-induced differentiation-associated protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111482348 PE=4 SV=1) HSP 1 Score: 469.5 bits (1207), Expect = 1.1e-128 Identity = 227/248 (91.53%), Postives = 236/248 (95.16%), Query Frame = 0
BLAST of ClCG10G016020 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein ) HSP 1 Score: 346.3 bits (887), Expect = 2.7e-95 Identity = 167/236 (70.76%), Postives = 191/236 (80.93%), Query Frame = 0
BLAST of ClCG10G016020 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein ) HSP 1 Score: 183.7 bits (465), Expect = 2.3e-46 Identity = 87/201 (43.28%), Postives = 129/201 (64.18%), Query Frame = 0
BLAST of ClCG10G016020 vs. TAIR 10
Match: AT1G69340.1 (appr-1-p processing enzyme family protein ) HSP 1 Score: 72.0 bits (175), Expect = 9.7e-13 Identity = 43/154 (27.92%), Postives = 80/154 (51.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|