ClCG10G011290 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G011290
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Gag-protease polyprotein
Location	CG_Chr10: 24902686 .. 24908844 (-)
RNA-Seq Expression	ClCG10G011290
Synteny	ClCG10G011290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTATCAAAGTATCTTATATAATTTGTAGATTGTGTAGTATACGAAAATAGAAAAAAGAAACACATTTAGGGCGACTTAGTTAAGAATCTAGATTCTATTTGATGTTTTCTTATTCGTTAAATTCAGTAAATATATGTTTGGTAGAAATTTTAAAATCTGTTTCATAAAATTGTTTCCGGATTCTTGATCCAAACAATGCAAATTTTGAAAACAATATATTTATGTTTTTTAATATATCCAGATTTTGAATTATAAATTTTAAAATATAGAATTATATTAAATAAAGATAAAGACCATTAAAAATATAGTATTTTGTCAAGTTATAAACTCAATTCAATTTTTTAAAAAGTTAAAATTTATATTACGTAATGTATTATAAATTATATAATACTACAAAATAATAGCTATACAAAAAATTAACATAAAACATGTTCATAAATTAATTAACAATAGTTTAAAATCAACTTAATGTTTAGTGATTACATAGCTACAACTAGTATTATGGTTTATAAGTAAAGTATTAAACACATATAAAATAATTGTTTAAATTAGAATTTAATTTCTAAATTTGCTACCAAACACTTATATGAAAACATGAAATGCAACTCTGTTTATTTGCCTCTCTTGTTTTCAAATTTCCTATCAAATGGCCCATTATAAGCTTGCTCCTCTAAAATGTGGAAAATGAATTTGATTTATGGATATTTTTGGCAAAAATATTCAAGTTTTATTTATTATTTTTTAGGAATTATTGTATGTTTGGATTATTTCAAGAAAAATTTGGAATTGAAATGGTACATTTGTCTTGTGTTAGCAGACTTGTGTAAGTGTCTACTAGTTATATTCTTATTTTAACATTTGTTTTAAAGGGTGATTGTATTTTAAAATGGGTGCAACACAAGGATTTTTCAAGTGGTCACCCAACCTTACTACAATCATCCAAGCATACTTAATTGTAGAGTTTTAATGGAATTCAATGCATTATTTGTGTTGGTATGATCGCATCCATTTATGTTATTGCTTAGTTGGCTACTGTTATTTTCTTTATCTTATTACTGCATGCTATTGTTGTTATCTTGTGGTGTGGCTTGTTTTTTAGGAGATTATATCCTTCCTTATTTGGCCCTGTGATTATTTAATTCTTCCCATTTTGACGGTGATCTCCTTCCTTTATTATTAAGGTGGTTTCCTTTTATGCAACATATTTGTTTGTTGGTTGCCTTGCTATTAGGTTAAGCCGCTTTTCATAGAGGTGTGTTTTTGCAATAGAAGGAGCTGCATAATCTTTGTGTGTTACCACAGTCTTGTTGATAATATCGTACTAGATAAATCCTGTGATAGGATTGTGGATGTTGTTGTTGTTGTTTGTACCGTAAATACCTCTGATTGAACGAAGTTCAATCGAAGAATGAAAAGATAGAAGAGTTGCATTTCGACTGCATCAGATTCAATGCAAGCCTAATATGAATACTCTTCTAGAGGGAGCTTTTATTTTAGGGGGAGTCTAATTCTCCTCACTAGATATTCTAGTTTGTTGCATTACTCTTGTAAGAGTAGTTCTATGAAGTTGTATACTTATAAGTTATCTAGTGAAGTTCTTTTCATTTAGGCGTATTGCTTCCCAGACGTAGGTGTGGTTACACCGAACTGGGTTACCAATTTTGTGTGTTATTTTTCTCTCTCTTTCTCTTGTTGCTACTTTTGTTATTAACATCTTCGGTCACATTGTTGCAATCCTCAAAATTTCAATTGGTATTAGAGCAAGGTCGGCCTCTTTTACATTGAGCTATTTAATGGAGGCTATTAAATAAGGTGGATCGACAACACGCCTGTTCTAGATGGTTCGAACTATTCCTATTGGAAAGAGAGGATGATAGCCTTCTTGAAATCTATTGATAATAAGACATGGAAGACTGTTGTGAATGGATGGAGTCCTCCATAAGTAACAGACACTAAAGGGAAGATTGGTCCCAAACGAGAGGAGGAAGATGAAGCTTCCTTAGGAAATTCTCGTAACTCTTAATGAGACCTTCAACGGTGTTAACAAGAATGTTTTTTGTCTTATCAATATTTTCATATTTGCTAAAAAGGCATGAGACATCCTTGCTGTTGCCCATGAAGATACTTCCAAAGTGAAAATGTCTAGACTGCAGCTTTTAACTACTAAATTTGAGTCTCTAAGAATGTCTGAAGAAGAGACCATAACTGAGTTTAATGTTCGCCTTCTAGATATTGCAAATGAATCTTTTGCTTTGGGTGAAAAGATATTAGAAGAGAAATTGGTTTGAAAGGTTCTTCGCTCTTTTCCAAAGAGATTCGATATGAAAGTCACAACGATTGAGGAAGGTCATGATATTGCAACAATGAAAGTTGATGAACTCTTTGGCTCTCTAAGAACCTTTGAAATGTCATTTGACGACAAGCTTGATAAAAAAAATATATATATATATATTGCCCTACAATCGTCTATTGAGTCCGATTTAGTAAGTGTTAAAAATAATGAATCGTATGAGAATCTAGCTCAATCTATTTCCTTACTTGCTAAACAATTTGAAAAGGCCTTTAGACGGTGGGATAAGCGTAATCTGTCCAGGAATAGTAATATTTCTCCCAATGGTTAGGAAAATTTTGTTCAGGTGGTTGGTTCTTTGTTAAAAATTGTCGATCTTCTGATCAAAAGGTTGACAATGGAAAAGGTTTTAGTTCCAGCTAAGATTTAGGAGACAAAAAAATCAGATGTAGAGAGTGTGAGGGATATAGACACTATCAAGCTAAATGTCCTAATTTTATGAAGAGAAAGAATAAAAGCTACTCAGTTACTCTATCAGATGATGATGAAGAGGAAGTTATCTCAAATGGTGTTTCTGATGAAGAAATGTGTGCCTTAATGGGCTATCTATCCCCAAGCAGTGTCCTAGAGATTAAATTTTCTGACAGTGCTGCTGATGTGCTCCCTCAGATGTCTCTTGATAGAAAGTCTGATCAGCATTGTCTTACCTTAGATGAAGTGTATCAGTGATGGACTGAAGACACAAAATGTAAACCCTACTTTCATTTCTAAGCACTTAATCTAACTACATAATATCGTTGTGGACTTAATTGTTTTCTCTTGTGTAGCTCAAAGGGAGAAATGAAGGAAAGCCGAGCATATTTTTGGTAAGTTGAATCCTAAATCAAACTTGGAATTTAGTTTGACTTAACAATTAGAATATATATAACACTTAAGAAAAGTGTCAATGATCGAACCAAAGTGAAGAAATATTATTATGGATTTTGTGTTATTACAATTATTGTGTAATTATTAATAATGAAGATTTATTAAAGAAAAAGAATAGGAAAAAAGAAAGAAGTGGAAGGAAGGAAAAAAAAAAAAGGAAAGAAAAAGGGAAAAAAAAGAAAAAAAAAAGAAAACAAAAAGAAAGTGGAATGTGAAAGTCAGTGGTTTGGAAAACATTTAACCGATTTGTAGAGCTGGCACTTCTCATTTTTCCAATCTCAAACCGACTTAAACTCTTAGCTTTGCATCGAGGGGAGGAAGAAGAAGACGACCAAGGTGAATTGGAGTGAAATTCTAGAAGAAATCGTGCTAGAAATTGAAGCTGAAATCGAGACTGGTCTGGTGTCCGCACAATCTGAGCAAGGTTTGGTATTTGGAAGATAGCGAGCTGTAGAGATCGCGTTTAGGGCTAAACATTTGAGGTTAGTTAGTAAATTTATTTCTTAAAAACTTTTATGAAGGATAATTGAGCTGAATGTGAAAAGAAACAGGTTTAATTATAGGTGAAAGTGACTAGTGCGAATTTCTCGAGTGATCAGGAGCATGGTAAAGTAAAATTAAAATATCTGATGAATGAAGAGAAGATAGACCCGGGAACTTGGAGGTAAGTTAGGAAACACATTTCCCTACAAGTTTGTAGAAGGAAGGAAATGCTAATTCAGGTTAGAAATGCTACTTTTAGCATTTAGAAACTAAGATAGAAGCTGTGTGAAACAGGTCTCGCTGGGAAAGAACAGCGACACTGGGCTTGGAGCAAGATGAATCTCGCTGGTGTCATATGTTGCTTTTTGTCTCACAAATCTCACTAGATCTCGCTGCTCTTGCTCGTCTCGCTGGTCTTGTTAGTCAGGTAAATCTCGCTAGTCACAGTCTCGCTGGTACAATTTCATTGGTTCCATGGTTTCGTTAGTCTAGTCTCGCTGGTGGACTGAATCTCGCTAGTTAGTGAATTTTGTTATAAAGTTTGGTCTCGGTAGGGACATGTGCATCAATATTTAAGGCCTATTTTCTATTACAATGGGAATTCTAAGGAATCTAACAAAGGAAACTAAACCATTTCAGGCTAAAAGAAGCTAAGGAAGGCGTATAATCCATTAAGGGCCCAAGACAAGTTGTGAGTGACAACTTTATTTAAAACGAGCTTACTTTAAACAAAGTTTTCATGATATATGATTATGTTTAGAAACATTTTTATATGTTTTCATGAGTTTAAATACACTACGATGAATATTTGTTTGAAAGAAAGCATGTGTTTTCATGTAAATGCATATTATGGTTTTGCATAGGAAATATTTGAAGCATGCTAGTTGTTAACCGAGCTTTATGAAAGACATGCTATTTATTAATCTATGGTTTTATGGAAGCATGATGATTGTTAATGGATTTGTGAAAGTCTAAGATGTTATAAACTCGTGAATTTTTATTATGTTATTTTCAAAGCATGTTGATTTTGAATTATGTTTTCGAAAAAGCTTTCAATGCTGAAGGACTCGAAGAAGGCATGTGGGTAGTCGGGATATAGAAATGGTTCCCAATGTTGAAGGACTCGGAGAAGGCATGTGGGTGGCCTAAATCTCGTATATGGGACCCGATACTGAAGTACTCGAGAAGGTATACGAGCAACCGAAGATATTATATCTATGTGCACATAGAGGTATGATTGATGTTGTTGTGTTGATATTACTCCACATAGCTAAGGATATTCGATGTTGGGTGTGTTTTGCGATTACTCCACCCCAACTAAGGAAGTTTTCGATGTTGAGTAGCGTTGAGCTTCGCTCTGCCTCAACTAAGAAAAATGTTTCTGAATGTGTTGTATTTTCAAGGTTTTTCAAAAATGAAACGTATATGGTTTGATAACGTTTTTCGAGCATGATTTTCTTGGACATGGAAATGAATTATTTACTGTTTATTAATTATCATATTTTGAACACGATTTTGATGTATTTCTAAGCTCGAAAAGATTTTTCCGGACTTGTCACTCACTGGGCAACCTTAGCTCATGTTTTCCTTGTTTTTTTGTTTTCTAGGTAGCGAGTGAATCCGGGGTGCTTAGCCTACACAACAACTCGTCTAGGCCTACCACTAGTATCTGTGAACTTTTAACATTGTTATTTGATATTAAGCATGTGTTGTACATATAAGGGGTTAAGAAGTGGTAGTTAGTGAACTCATGTAATATTTAAGTTTGAATGTAAGCCAGTATTTGTATGATAGTTTACCCCTAGTAAAAGATTTATGTTCTATCATTGATTTATATCTGCTTATTAGATGTTTGGTCATGGTTTAAAGTGGTACAGGTTGACAGTAGACGTCGTAGGAGGGTCGGCATCTGTTGTCCTCACACTTTCTCCTAGGTTAAAAGGGTACTTGGGAGGGGGTGTGCACAAAAGCTATTACTATTCAGGAAGAAAGAATTGAGAAACTAATGGGAGACAATCATCGTCTATTGAGCACTATATTTGAGCTGAAGAAGGAACTGAAAATAGCAAAGACTGAGTTGGAGTCAATGGCTAAATCTGTTCGTATGATGAACTCTAGCACAGATGATTTGAACAAGATCTTGTCCTTTGGTAAAAAAAGCTTCGGACAAGAGTGGTGGTAGCTTTTCTCCATAAAAAAAAATAATGAGTTCAGAGGAGAATCTTCCTTGTCCAAGGTCTTTGTTCTTGTCAAACATGTCCAAATATCCTCTCATGATTATAATCAGAAAGGTCTGTGTGTTGAGCCTGTTCAACATAAGTCTTAGAAGAGGTGGATTTGTCATTTCTACAGAAGCGTTGGTCATATTCATCCTTACTATTTTCAGCTGCATGGAAGTCATTCCTATCCGAGACTGCATAAGCTATCGTTTAAAGCTCATAATTTTGCTCGAC

mRNA sequence

ATGGTAAGTGTTAAAAATAATGAATCGTATGAGAATCTAGCTCAATCTATTTCCTTACTTGCTAAACAATTTGAAAAGGCCTTTAGACGGTGGGATAAGCGTAATCTGTCCAGGAATAGTAATATTTCTCCCAATGGAAAATTTTGTTCAGGTGGTTGGTTCTTTGTTAAAAATTGTCGATCTTCTGATCAAAAGGTTGACAATGGAAAAGGAGACAAAAAAATCAGATGTAGAGAGTGTGAGGGATATAGACACTATCAAGCTAAATGTCCTAATTTTATGAAGAGAAAGAATAAAAGCTACTCAGTTACTCTATCAGATGATGATGAAGAGGAAGTTATCTCAAATGGTGTTTCTGATGAAGAAATGTGTGCCTTAATGGGCTATCTATCCCCAAGCAGTGTCCTAGAGATTAAATTTTCTGACAGTGCTGCTGATGTGCTCCCTCAGATGTCTCTTGATAGAAACTGCATGGAAGTCATTCCTATCCGAGACTGCATAAGCTATCGTTTAAAGCTCATAATTTTGCTCGAC

Coding sequence (CDS)

ATGGTAAGTGTTAAAAATAATGAATCGTATGAGAATCTAGCTCAATCTATTTCCTTACTTGCTAAACAATTTGAAAAGGCCTTTAGACGGTGGGATAAGCGTAATCTGTCCAGGAATAGTAATATTTCTCCCAATGGAAAATTTTGTTCAGGTGGTTGGTTCTTTGTTAAAAATTGTCGATCTTCTGATCAAAAGGTTGACAATGGAAAAGGAGACAAAAAAATCAGATGTAGAGAGTGTGAGGGATATAGACACTATCAAGCTAAATGTCCTAATTTTATGAAGAGAAAGAATAAAAGCTACTCAGTTACTCTATCAGATGATGATGAAGAGGAAGTTATCTCAAATGGTGTTTCTGATGAAGAAATGTGTGCCTTAATGGGCTATCTATCCCCAAGCAGTGTCCTAGAGATTAAATTTTCTGACAGTGCTGCTGATGTGCTCCCTCAGATGTCTCTTGATAGAAACTGCATGGAAGTCATTCCTATCCGAGACTGCATAAGCTATCGTTTAAAGCTCATAATTTTGCTCGAC

Protein sequence

MVSVKNNESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVDNGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNGVSDEEMCALMGYLSPSSVLEIKFSDSAADVLPQMSLDRNCMEVIPIRDCISYRLKLIILLD

Homology

[Close]

BLAST of ClCG10G011290 vs. NCBI nr
Match: PNX70731.1 (gag-protease polyprotein [Trifolium pratense])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 8   ESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVD 67
           +S ++++++I LL +QF K  +R D++  +   N+ PN    +G     K     D+K  
Sbjct: 44  DSSDSISEAIVLLGRQFNKVMKRMDRKLRANGKNLIPNSNRSTGTQIKTK----PDEKTS 103

Query: 68  NGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNGVSDEEMCALM 127
             KG   I+C ECEGYRH +A+CPN++K++ KS +V+ SDD+  +   +  S +++ AL 
Sbjct: 104 QSKG---IQCHECEGYRHIRAECPNYLKKQKKSLTVSWSDDEVSDNEGDVESAKQITALT 163

Query: 128 GYLSPSS 135
           G  +  S
Sbjct: 164 GICASES 163

[Close]

BLAST of ClCG10G011290 vs. NCBI nr
Match: MCH79357.1 (gag-protease polyprotein [Trifolium medium])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 7   NESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKV 66
           +ES E+LA+S+++L +QF K  ++ D+R         PNG+F +       N +SS QK 
Sbjct: 240 SESEESLAESMAMLGRQFNKLMKKLDQR-------AKPNGRFNN-------NKQSSSQKK 299

Query: 67  DNGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNG--------- 125
            N + +K +RC ECEG+ H + +CP F+KR+ KS   + SD D EE  S           
Sbjct: 300 TN-EDEKGVRCHECEGFGHIRPECPTFLKRQKKSLVASWSDTDSEEEESYKFVNALTGVC 351

[Close]

BLAST of ClCG10G011290 vs. NCBI nr
Match: MCH86967.1 (gag-protease polyprotein [Trifolium medium])

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-09
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 8   ESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVD 67
           +S E+L+++I LL +QF K  RR DKR     SN+ P+ KF        +     D+K  
Sbjct: 77  DSDESLSEAIVLLGRQFNKVLRRMDKR---PKSNV-PSIKFDISKQANSQRKNRGDEKTS 136

Query: 68  NGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNGVSDEEMCALM 127
             KG   ++C ECEGY H + +C  F+KR+ KS +VT SD+D+ E      S + + AL 
Sbjct: 137 QSKG---VQCHECEGYGHIRTECATFLKRQKKSLAVTWSDEDDSEEEIENESAKHVHALT 190

Query: 128 G 129
           G
Sbjct: 197 G 190

[Close]

BLAST of ClCG10G011290 vs. NCBI nr
Match: PNX96336.1 (gag-protease polyprotein [Trifolium pratense])

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-09
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 8   ESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVD 67
           +S E+L++++ LL +QF K  +R DKR+       +P+ K         +    SD K+ 
Sbjct: 240 DSDESLSEAMVLLGRQFNKIMKRMDKRSKFN----APSTKLDISKPITNQRRTRSDDKLT 299

Query: 68  NGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEE 113
             KG   ++C ECEGY H +A+CP FMK++ KS +VT SDDD+ E
Sbjct: 300 TSKG---VQCHECEGYGHIKAECPTFMKKQKKSLAVTWSDDDDSE 337

[Close]

BLAST of ClCG10G011290 vs. NCBI nr
Match: XP_024630197.1 (uncharacterized protein LOC112418154 [Medicago truncatula])

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-09
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 1   MVSVKNNESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCR 60
           M S +  E  E++++S++LL +QF+K F+R+D+R+     NI PN          + N  
Sbjct: 199 MYSDETQEDDEDMSESLALLGRQFKKIFKRFDRRSRPNGQNIKPN----------IDNQP 258

Query: 61  SSDQKV---DNGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNG 120
           S ++     +     K ++C ECEGY H + +C  F+K++ KS+ V+LSD D+       
Sbjct: 259 SKEKMTRFNEMNSHYKGVQCYECEGYGHIRTECATFLKKQKKSFVVSLSDGDDSNEEVKV 318

Query: 121 VSDEEMCALMG 129
            S   + AL G
Sbjct: 319 ESSNHVSALTG 319

[Close]

BLAST of ClCG10G011290 vs. ExPASy TrEMBL
Match: A0A2K3KWR0 (Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g057687 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.0e-12
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 8   ESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVD 67
           +S ++++++I LL +QF K  +R D++  +   N+ PN    +G     K     D+K  
Sbjct: 44  DSSDSISEAIVLLGRQFNKVMKRMDRKLRANGKNLIPNSNRSTGTQIKTK----PDEKTS 103

Query: 68  NGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNGVSDEEMCALM 127
             KG   I+C ECEGYRH +A+CPN++K++ KS +V+ SDD+  +   +  S +++ AL 
Sbjct: 104 QSKG---IQCHECEGYRHIRAECPNYLKKQKKSLTVSWSDDEVSDNEGDVESAKQITALT 163

Query: 128 GYLSPSS 135
           G  +  S
Sbjct: 164 GICASES 163

[Close]

BLAST of ClCG10G011290 vs. ExPASy TrEMBL
Match: A0A392LWL9 (Gag-protease polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0000106 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-10
Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 7   NESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKV 66
           +ES E+LA+S+++L +QF K  ++ D+R         PNG+F +       N +SS QK 
Sbjct: 240 SESEESLAESMAMLGRQFNKLMKKLDQR-------AKPNGRFNN-------NKQSSSQKK 299

Query: 67  DNGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNG--------- 125
            N + +K +RC ECEG+ H + +CP F+KR+ KS   + SD D EE  S           
Sbjct: 300 TN-EDEKGVRCHECEGFGHIRPECPTFLKRQKKSLVASWSDTDSEEEESYKFVNALTGVC 351

[Close]

BLAST of ClCG10G011290 vs. ExPASy TrEMBL
Match: A0A392MHK4 (Gag-protease polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0007831 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 8   ESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVD 67
           +S E+L+++I LL +QF K  RR DKR     SN+ P+ KF        +     D+K  
Sbjct: 77  DSDESLSEAIVLLGRQFNKVLRRMDKR---PKSNV-PSIKFDISKQANSQRKNRGDEKTS 136

Query: 68  NGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNGVSDEEMCALM 127
             KG   ++C ECEGY H + +C  F+KR+ KS +VT SD+D+ E      S + + AL 
Sbjct: 137 QSKG---VQCHECEGYGHIRTECATFLKRQKKSLAVTWSDEDDSEEEIENESAKHVHALT 190

Query: 128 G 129
           G
Sbjct: 197 G 190

[Close]

BLAST of ClCG10G011290 vs. ExPASy TrEMBL
Match: A0A2K3MZZ1 (Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g019540 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 8   ESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQKVD 67
           +S E+L++++ LL +QF K  +R DKR+       +P+ K         +    SD K+ 
Sbjct: 240 DSDESLSEAMVLLGRQFNKIMKRMDKRSKFN----APSTKLDISKPITNQRRTRSDDKLT 299

Query: 68  NGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEE 113
             KG   ++C ECEGY H +A+CP FMK++ KS +VT SDDD+ E
Sbjct: 300 TSKG---VQCHECEGYGHIKAECPTFMKKQKKSLAVTWSDDDDSE 337

[Close]

BLAST of ClCG10G011290 vs. ExPASy TrEMBL
Match: A0A0A0L327 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088950 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 5   KNNESYENLAQSISLLAKQFEKAFRRWDKRNLSRNSNISPNGKFCSGGWFFVKNCRSSDQ 64
           K   SYENLA+SISLLAK+F +A +RWDKR   R + + P          +VKN  SS  
Sbjct: 28  KKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDP----------YVKNVGSSG- 87

Query: 65  KVDNGKGDKKIRCRECEGYRHYQAKCPNFMKRKNKSYSVTLSDDDEEEVISNGVSDEEMC 124
                 G+K         ++H+  KCPN+++++ + Y V LSD++    I    SD+E+ 
Sbjct: 88  ------GNK---------FKHFHVKCPNYLRKQGQWYFVMLSDEETHSCID---SDDEVH 124

Query: 125 ALMGYL 131
           AL+  L
Sbjct: 148 ALIDKL 124

The following BLAST results are available for this feature:

BLAST of ClCG10G011290 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX70731.1	1.2e-11	33.86	gag-protease polyprotein [Trifolium pratense]	[more]
MCH79357.1	1.2e-09	37.80	gag-protease polyprotein [Trifolium medium]	[more]
MCH86967.1	3.4e-09	38.02	gag-protease polyprotein [Trifolium medium]	[more]
PNX96336.1	4.4e-09	39.05	gag-protease polyprotein [Trifolium pratense]	[more]
XP_024630197.1	4.4e-09	32.06	uncharacterized protein LOC112418154 [Medicago truncatula]	[more]

BLAST of ClCG10G011290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G011290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3KWR0	6.0e-12	33.86	Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g057687 PE=4 SV=...	[more]
A0A392LWL9	5.6e-10	37.80	Gag-protease polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0000106 PE=4 SV=1	[more]
A0A392MHK4	1.6e-09	38.02	Gag-protease polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0007831 PE=4 SV=1	[more]
A0A2K3MZZ1	2.1e-09	39.05	Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g019540 PE=4 SV=...	[more]
A0A0A0L327	2.8e-09	37.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088950 PE=4 SV=1	[more]

BLAST of ClCG10G011290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 57..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G011290.1	ClCG10G011290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding