ClCG10G010700 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G010700
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPMD domain-containing protein
LocationCG_Chr10: 23640021 .. 23642804 (+)
RNA-Seq ExpressionClCG10G010700
SyntenyClCG10G010700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCCAAGTAATTATAAGCTCTTGGATTTCATTCTGGTTTCTTGGGGCTCGAAAATATGATAAGCCTCCTGTACAAAAACAAAGGAAGGCTTCCCGCTCTCGGTCCACTCATAACCTGGATGATGCAAAAATCAAGTATCGAGCCTGGTCAACTAGGAAAAATATGCGATTCAAGGAACTTGGAATAGAAGACACCTTAAGAGACAAGACATATCTGGTTGCTTTCTTGTCCTGTTTGTTGTGTCTTTTCGTGTTCCCCCAAAAGGGAGCTTTCCTTCGCCCAAGAGTTTTTAAAGTTGCTAGCACGATGGCTGATGGGAAGTCTTATAGCCTTGGTATTCCAGTCCTAGCCAATATATATCATGGTCTAGGGCTGATTACCGAAGCTACCAACCCGATTTGACGTATGGACTTTCATTTTCCTATGCATTATGTCTACGGCTGGCTGGTCCATTACTTTAACATGCATTACCTTGTTCCTGTGGATGTGCGGCGTCCCAAGATGGCCAATTTATCTGAAGGAGGTGGCTTGATCTATTTCGGGGAATATGAAGCACGAGAGTTGATCCATAGAGGTGCAAACATCCAATGGCATGTAACTATCTAGGGCCGAAATAAGCATGAGTGCTTGGTTGATGATAATGACTTATCATCCCAACATTCTTACCAAATTTCCAGCATGCGATCCGGTTATGTATCATCCCAGTGTGGAGACACTTTGATACTAGAATCATATAGTCCTCATCGATTTGGGCAGTAGTTTGGATTTTATCAAGACACTCCTAATGATATAGGGGGAATGCCCCCTACCGCTACACTTAATAACATCTTATATTACTTCAGGGTTTGTACGAGGCGTAACACATTATCCCAAGTGTTCTTTCCAGCTCACCAATTGGAGCCACGTAACCATGTTACATCACAATACAGAAACTGGTGGCTGTCAAAATATGAGAGTTATTTTGAGGATAACATTCATCAACTAGTAAGTAATGCTATTCCTCCCCCATCACAACCCCGACTACCCAAGAACAAATGGGCCAACCAAGGTGGCAAACAACTTCGTCTTATTGAAGAAGTGATTTGTACCTCTCAAGATGATGATGTGACTCATGCGGAAGGGAATCACAGTAGTANTTGCATCCCAACAGAACAACTCTCTTTTTTTTTTTTTGGGGCTTACGAACCTTCAAATTGTACTTGCCAACGATTGATTTAACGTCTCCACTACGGACTCGGGGCGTGACGACTTGAATTATTAATTTTTCATCTCTCTATTGCTTTGGTGCATGAAGATTTGAGTTACTAACTCACCGCCTCTCTGCTGCCTTGGCGCATGAAGATTTAAATTGTTGATCTGCCGTCTCCCTACAGGTAGGGACGACCCTGGAGCTCTGAACTATTGAGTTAGGGATGAGCCAGGGAAGATCTTAGCGACTATGGCTCGCCATCACCCTACAGGTAGGGATGACCCTGGGTCTTTGAACTATTGAATTAGGGATGAGCCCGAGAAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGTCTCTGAACTATTGAATTAGGGATTAGCCCGGGAAGATCTTAGCAATTTGAAGGTCTTAGCAACTGAAGTTCGCCATCACCCTACAGGTAGGGATAACCCTGGGTCTCTGAACTATTGAATTAGGGATGAGCCCAGGGAGATCTTAGCGATATGAAGGTCTTAGCGTTGAAGTTTGCCGTCACCCTACAGGTAGGGATGACCCTGGGTCTCTGAACTATTGAATTAGGGATGAGCTTGGGAAGATCTTAGCGACCATCATCTTGGCCCTAGGACTGGGCAGTCGCCTAGGGGTGGTGACATTGCGATGTCCATATCAGGGGTGGACAAATTTTTTTTTTCTTGGAATATGTTCATGTCTGCTTCACCATTTAAAACTTTCATGTCTCTATTTCTTGTAGATCGGGTAATTAAGACCTAACTTCTTATCCAAGAAAAAAAGAATTTTCAGATATTTGGCCAGAGTTAGATAACGATATGACCCTCCTCGAACTATCTATTGAGGTGCCTTTTCATCAGGGGGAAAAGGTGTGGATCCTAAGGTCGCCGATTCATGACACATCCCCTTCCCTGGATCGATTGTTAACTCTCGGGTGGCGCATGCTGGAAGGCGAGACTTGTTGGAGCACAATTATGAAAGTCCCTGGTGAATTCACTTTTATTGACTACTATTAGGAATGGTAGGAGCTCATAGTTAACCGAAATGAACAGTTTCTTCACGATGTTCGTTTGTTTAATGTAGTGATGGCCTCTTCATATACATATGACCGCAATAATGATGTGGTTTGGGCCTTTTGTGAGGCTTGGTGTCTGTCTACTAACACTCTCCATACCATGGCAGGCGAAGTATCCATTTCTTTATGGGACCTATGGTCACTTGGTGGTCTTCCGATCAGGGGGACTTTGTATGAGGAGGTTATTCCTTGCTATAAAGAATTAACCGGCGTGCGAGAGAAGAGAAGATATCTCCCAAAGACTTGTGAGCATTTGTTTGCAGCCTACTATTCGATAGTTTACTCCCAGAGGGAAGATCGTACATCATCCTCAAAAAATGACTCCCAAGTAATTATAAGCTCTTGGATTTCATTCTGGTTTCTTGGGGCTCGAAAATATGATAAGCCTCCTGTACAAAAACAAAGGAAGGCTTCCCGCTCTCGGTCCACTCATAACCTGGATGATGCAAAAATCAAGTATCGAGCC

mRNA sequence

ATGACTCCCAACTCTTGGATTTCATTCTGGTTTCTTGGGGCTCGAAAATATGATAAGCCTCCTGTACAAAAACAAAGGAAGGCTTCCCGCTCTCGGTCCACTCATAACCTGGATGATGCAAAAATCAACTCTTGGATTTCATTCTGGTTTCTTGGGGCTCGAAAATATGATAAGCCTCCTGTACAAAAACAAAGGAAGGCTTCCCGCTCTCGGTCCACTCATAACCTGGATGATGCAAAAATCAAGTATCGAGCC

Coding sequence (CDS)

ATGACTCCCAACTCTTGGATTTCATTCTGGTTTCTTGGGGCTCGAAAATATGATAAGCCTCCTGTACAAAAACAAAGGAAGGCTTCCCGCTCTCGGTCCACTCATAACCTGGATGATGCAAAAATCAACTCTTGGATTTCATTCTGGTTTCTTGGGGCTCGAAAATATGATAAGCCTCCTGTACAAAAACAAAGGAAGGCTTCCCGCTCTCGGTCCACTCATAACCTGGATGATGCAAAAATCAAGTATCGAGCC

Protein sequence

MTPNSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYRA
Homology
[Close]
BLAST of ClCG10G010700 vs. NCBI nr
Match: TYK06200.1 (hypothetical protein E5676_scaffold287G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG+R YDKP  +KQ+K SRS+ST N DD+KI+ R
Sbjct: 222 QRNDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKVSRSKSTENPDDSKIQAR 280

[Close]
BLAST of ClCG10G010700 vs. NCBI nr
Match: TYK06278.1 (hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-08
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG+R YDKP  +KQ+KASRS+ST N D  KI+ R
Sbjct: 189 QRYDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKASRSKSTQNPDGLKIQAR 247

[Close]
BLAST of ClCG10G010700 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-08
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIK 83
           ++  RS S+ N     I SWISFW+LG+R YDKP  +KQ+KASRS+ST N D +KI+
Sbjct: 88  QRNDRSASSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKASRSKSTQNPDGSKIQ 144

[Close]
BLAST of ClCG10G010700 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 8.9e-08
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG++ YDKP  +KQ+KASRS+ST N D +KI+ R
Sbjct: 234 QRNDRSTSSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSKIQAR 292

[Close]
BLAST of ClCG10G010700 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 8.9e-08
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG++ YDKP  +KQ+KASRS+ST N D +KI+ R
Sbjct: 240 QRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSKIQAR 298

[Close]
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match: A0A5D3C4E5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00580 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.7e-09
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG+R YDKP  +KQ+K SRS+ST N DD+KI+ R
Sbjct: 222 QRNDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKVSRSKSTENPDDSKIQAR 280

[Close]
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match: A0A5D3C543 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00620 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG+R YDKP  +KQ+KASRS+ST N D  KI+ R
Sbjct: 189 QRYDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKASRSKSTQNPDGLKIQAR 247

[Close]
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIK 83
           ++  RS S+ N     I SWISFW+LG+R YDKP  +KQ+KASRS+ST N D +KI+
Sbjct: 88  QRNDRSASSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKASRSKSTQNPDGSKIQ 144

[Close]
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG++ YDKP  +KQ+KASRS+ST N D +KI+ R
Sbjct: 64  QRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPKTRKQKKASRSKSTQNPDGSKIQAR 122

[Close]
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 26  RKASRSRSTHNLDDAKINSWISFWFLGARKYDKPPVQKQRKASRSRSTHNLDDAKIKYR 85
           ++  RS S+ N     I SWISFW+LG++ YDKP  +KQ+KASRS+ST N D +KI+ R
Sbjct: 234 QRNDRSTSSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSKIQAR 292

The following BLAST results are available for this feature:
BLAST of ClCG10G010700 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK06200.11.8e-0854.24hypothetical protein E5676_scaffold287G00580 [Cucumis melo var. makuwa][more]
TYK06278.16.8e-0854.24hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa][more]
KAA0050333.16.8e-0854.39hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa][more]
KAA0047478.18.9e-0852.54hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa][more]
KAA0053466.18.9e-0852.54hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa][more]
BLAST of ClCG10G010700 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C4E58.7e-0954.24PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3C5433.3e-0854.24PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7U3493.3e-0854.39PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7UVI54.3e-0852.54PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7TX424.3e-0852.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of ClCG10G010700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G010700.1ClCG10G010700.1mRNA