ClCG10G009600 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G009600
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Carbonic anhydrase
Location	CG_Chr10: 21883887 .. 21884096 (-)
RNA-Seq Expression	ClCG10G009600
Synteny	ClCG10G009600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAATAGTCGGACCGGGCATAGGGTTTGGCAAGATTGGCAATGGTGGTAGAGGCGGTATTGCAAATGGCTTCGACATTGGAGACATTGGTGGCAAATTTGGAATTGCCTGTAGAAGATGTCGAGTAGTTCGAGCAGCATTGACGCTTGAAAATGTCAAAGTAATGACGAAGGCGAGGATGAAGTGGTCGAAAGAAGCCATATGA

mRNA sequence

ATGAATGGAATAGTCGGACCGGGCATAGGGTTTGGCAAGATTGGCAATGGTGGTAGAGGCGGTATTGCAAATGGCTTCGACATTGGAGACATTGGTGGCAAATTTGGAATTGCCTGTAGAAGATGTCGAGTAGTTCGAGCAGCATTGACGCTTGAAAATGTCAAAGTAATGACGAAGGCGAGGATGAAGTGGTCGAAAGAAGCCATATGA

Coding sequence (CDS)

ATGAATGGAATAGTCGGACCGGGCATAGGGTTTGGCAAGATTGGCAATGGTGGTAGAGGCGGTATTGCAAATGGCTTCGACATTGGAGACATTGGTGGCAAATTTGGAATTGCCTGTAGAAGATGTCGAGTAGTTCGAGCAGCATTGACGCTTGAAAATGTCAAAGTAATGACGAAGGCGAGGATGAAGTGGTCGAAAGAAGCCATATGA

Protein sequence

MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKARMKWSKEAI

Homology

[Close]

BLAST of ClCG10G009600 vs. NCBI nr
Match: TYK29414.1 (beta carbonic anhydrase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKA 60
           M+GI+GP      +G GGRGG A+G     IGGKFGI CRRCR VRAA TLEN KV  KA
Sbjct: 343 MDGILGP------VGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKA 402

Query: 61  RMKWSKEAI 70
           RMK  KEAI
Sbjct: 403 RMKQLKEAI 405

[Close]

BLAST of ClCG10G009600 vs. NCBI nr
Match: KAA0044283.1 (beta carbonic anhydrase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKA 60
           M+GI+GP      +G GGRGG A+G     IGGKFGI CRRCR VRAA TLEN KV  KA
Sbjct: 347 MDGILGP------VGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKA 406

Query: 61  RMKWSKEAI 70
           RMK  KEAI
Sbjct: 407 RMKQLKEAI 409

[Close]

BLAST of ClCG10G009600 vs. NCBI nr
Match: XP_016901486.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKA 60
           M+GI+GP      +G GGRGG A+G     IGGKFGI CRRCR VRAA TLEN KV  KA
Sbjct: 85  MDGILGP------VGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKA 144

Query: 61  RMKWSKEAI 70
           RMK  KEAI
Sbjct: 145 RMKQLKEAI 147

[Close]

BLAST of ClCG10G009600 vs. NCBI nr
Match: XP_022984242.1 (uncharacterized protein LOC111482613 [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 2   NGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKF----GIACRRCRVVRAALTLENVKVM 61
           +G++GP +GFG +GN GRGG A+G     IGG+     G  CRRCRV R   TLEN K  
Sbjct: 73  DGVLGPVVGFGNMGNAGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKAT 132

Query: 62  TKARMK 64
             A++K
Sbjct: 133 MMAKVK 138

[Close]

BLAST of ClCG10G009600 vs. ExPASy TrEMBL
Match: A0A5D3E0R8 (Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00040 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKA 60
           M+GI+GP      +G GGRGG A+G     IGGKFGI CRRCR VRAA TLEN KV  KA
Sbjct: 343 MDGILGP------VGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKA 402

Query: 61  RMKWSKEAI 70
           RMK  KEAI
Sbjct: 403 RMKQLKEAI 405

[Close]

BLAST of ClCG10G009600 vs. ExPASy TrEMBL
Match: A0A5A7TL95 (Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00040 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKA 60
           M+GI+GP      +G GGRGG A+G     IGGKFGI CRRCR VRAA TLEN KV  KA
Sbjct: 347 MDGILGP------VGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKA 406

Query: 61  RMKWSKEAI 70
           RMK  KEAI
Sbjct: 407 RMKQLKEAI 409

[Close]

BLAST of ClCG10G009600 vs. ExPASy TrEMBL
Match: A0A1S4DZT7 (uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC107991270 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MNGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKFGIACRRCRVVRAALTLENVKVMTKA 60
           M+GI+GP      +G GGRGG A+G     IGGKFGI CRRCR VRAA TLEN KV  KA
Sbjct: 85  MDGILGP------VGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKA 144

Query: 61  RMKWSKEAI 70
           RMK  KEAI
Sbjct: 145 RMKQLKEAI 147

[Close]

BLAST of ClCG10G009600 vs. ExPASy TrEMBL
Match: A0A6J1J1P5 (uncharacterized protein LOC111482613 OS=Cucurbita maxima OX=3661 GN=LOC111482613 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-05
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 2   NGIVGPGIGFGKIGNGGRGGIANGFDIGDIGGKF----GIACRRCRVVRAALTLENVKVM 61
           +G++GP +GFG +GN GRGG A+G     IGG+     G  CRRCRV R   TLEN K  
Sbjct: 73  DGVLGPVVGFGNMGNAGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKAT 132

Query: 62  TKARMK 64
             A++K
Sbjct: 133 MMAKVK 138

The following BLAST results are available for this feature:

BLAST of ClCG10G009600 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29414.1	9.1e-11	63.77	beta carbonic anhydrase 5 [Cucumis melo var. makuwa]	[more]
KAA0044283.1	9.1e-11	63.77	beta carbonic anhydrase 5 [Cucumis melo var. makuwa]	[more]
XP_016901486.1	9.1e-11	63.77	PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis me...	[more]
XP_022984242.1	4.4e-05	48.48	uncharacterized protein LOC111482613 [Cucurbita maxima]	[more]

BLAST of ClCG10G009600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G009600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0R8	4.4e-11	63.77	Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G0...	[more]
A0A5A7TL95	4.4e-11	63.77	Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00...	[more]
A0A1S4DZT7	4.4e-11	63.77	uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1J1P5	2.1e-05	48.48	uncharacterized protein LOC111482613 OS=Cucurbita maxima OX=3661 GN=LOC111482613...	[more]

BLAST of ClCG10G009600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G009600.1	ClCG10G009600.1	mRNA