ClCG10G009400 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G009400
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ATP synthase subunit beta, chloroplastic
Location	CG_Chr10: 21180963 .. 21181971 (-)
RNA-Seq Expression	ClCG10G009400
Synteny	ClCG10G009400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGGTATTTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTACAACCTCGAATCGTTGGTGAAAAACATTATGAAACTGTGCAAAGAGTTATACAAACCTTACAACGTTACAAAAAACTGCAAGACATTATAGCTATCCTTGGGTTGGACAAATTATCCGAAGAGGATCACTTAATCGTAGCACGAGCATGAAAAATTGAGCGTTTCTTATCCCAACCTTTTTTCGTAGCAGAAGTATTTACTAGTTCCCCTGGGAAATACGTTGGCCTAGTAAAAACAATTAGAGGGTTTAAATTAATCCTTTCTGGAGAATTAGATGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAACATCGATGAAGCTATTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAATTGATGAAATGACCTTAAATCTTAGTGTTCTGACTCCGAATCGAATTATTTAGGATTCAAAAGTGAAAGAAATCATTTTAGTTGCAAATAGTGGCCAAATTGGTGTATTACCAGATCATGCACCTATTGCCACAACTGTAGATATAGGTATTTTGAAAATACACCTTACTCCTAATGACGGATGGTTAAGAGGATAGGCTCATTACATTCAAAAAGATATATGGGAATTTCCCAGAAATAATTGCAATAATTGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGGGATCGTCGAAGTTTTGAAATGAATGGAAAGACAATCTACTTTCATTAAGTGATTTATTAGATAATCAAAACAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC

mRNA sequence

ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC

Coding sequence (CDS)

ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC

Protein sequence

IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTIQNSEVLRGGFIEQLEKSLGPLTKSRNGSGSVSSEWIL

Homology

[Close]

BLAST of ClCG10G009400 vs. NCBI nr
Match: QRN73536.1 (CF1 subunit beta [Phaeocystis globosa] >QRN73644.1 CF1 subunit beta [Phaeocystis globosa] >QRN73752.1 CF1 subunit beta [Phaeocystis globosa])

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 310 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGIVGEVHYE 369

Query: 61  LGPLTKS 64
           +    KS
Sbjct: 370 IAQRIKS 376

[Close]

BLAST of ClCG10G009400 vs. NCBI nr
Match: AKF18314.1 (ATP synthase beta subunit, partial [Biddulphia alternans])

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 41  VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 100

Query: 61  LGPLTK 63
           +    K
Sbjct: 101 IAETVK 106

[Close]

BLAST of ClCG10G009400 vs. NCBI nr
Match: QRN73860.1 (CF1 subunit beta [Phaeocystis globosa])

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 310 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGIVGEVHYE 369

Query: 61  LGPLTKS 64
           +    KS
Sbjct: 370 IAQRIKS 376

[Close]

BLAST of ClCG10G009400 vs. NCBI nr
Match: AAX57072.1 (ATP synthase beta subunit, partial [Phyllanthus lokohensis])

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-07
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI 40
           +YVPADDLTDLAPATTFAHLDA TVLSRGLA K I   +
Sbjct: 315 VYVPADDLTDLAPATTFAHLDATTVLSRGLAAKGIYPAV 353

[Close]

BLAST of ClCG10G009400 vs. NCBI nr
Match: AKF18324.1 (ATP synthase beta subunit, partial [Synedra fulgens])

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + +    
Sbjct: 281 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGIVSEEHYE 340

Query: 61  LGPLTK 63
           +  + K
Sbjct: 341 IAEMVK 346

[Close]

BLAST of ClCG10G009400 vs. ExPASy Swiss-Prot
Match: Q5SCV8 (ATP synthase subunit beta, chloroplastic OS=Huperzia lucidula OX=37429 GN=atpB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-09
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTIQNSE 44
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +  S+
Sbjct: 325 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPSD 367

[Close]

BLAST of ClCG10G009400 vs. ExPASy Swiss-Prot
Match: Q95AF8 (ATP synthase subunit beta, chloroplastic OS=Aspidistra elatior OX=39526 GN=atpB PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-09
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 380

[Close]

BLAST of ClCG10G009400 vs. ExPASy Swiss-Prot
Match: Q9TMV0 (ATP synthase subunit beta, chloroplastic OS=Beaucarnea recurvata OX=39519 GN=atpB PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-09
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 380

[Close]

BLAST of ClCG10G009400 vs. ExPASy Swiss-Prot
Match: Q9TMU1 (ATP synthase subunit beta, chloroplastic OS=Convallaria majalis OX=32189 GN=atpB PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-09
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 380

[Close]

BLAST of ClCG10G009400 vs. ExPASy Swiss-Prot
Match: A6MML4 (ATP synthase subunit beta, chloroplastic OS=Dioscorea elephantipes OX=145284 GN=atpB PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-09
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 325 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 378

[Close]

BLAST of ClCG10G009400 vs. ExPASy TrEMBL
Match: A0A0F6YSU4 (H(+)-transporting two-sector ATPase (Fragment) OS=Biddulphia alternans OX=1003021 GN=atpB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 41  VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 100

Query: 61  LGPLTK 63
           +    K
Sbjct: 101 IAETVK 106

[Close]

BLAST of ClCG10G009400 vs. ExPASy TrEMBL
Match: A0A0F6YSW1 (ATP synthase subunit beta (Fragment) OS=Rhizosolenia formosa OX=1334977 GN=atpB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 278 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 337

Query: 61  LGPLTK 63
           +    K
Sbjct: 338 IAESVK 343

[Close]

BLAST of ClCG10G009400 vs. ExPASy TrEMBL
Match: A0A4D6WXG1 (ATP synthase subunit beta OS=Hypnea pannosa OX=105607 GN=atpB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + +   S
Sbjct: 308 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLGSTSTMLQPGIVGEEHYS 367

Query: 61  LGPLTKS 64
           +    KS
Sbjct: 368 IAQEIKS 374

[Close]

BLAST of ClCG10G009400 vs. ExPASy TrEMBL
Match: Q4VMZ5 (ATP synthase subunit beta (Fragment) OS=Phyllanthus lokohensis OX=287983 GN=atpB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI 40
           +YVPADDLTDLAPATTFAHLDA TVLSRGLA K I   +
Sbjct: 315 VYVPADDLTDLAPATTFAHLDATTVLSRGLAAKGIYPAV 353

[Close]

BLAST of ClCG10G009400 vs. ExPASy TrEMBL
Match: A0A0F6YSV0 (ATP synthase subunit beta (Fragment) OS=Synedra fulgens OX=1003018 GN=atpB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + +    
Sbjct: 281 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGIVSEEHYE 340

Query: 61  LGPLTK 63
           +  + K
Sbjct: 341 IAEMVK 346

[Close]

BLAST of ClCG10G009400 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-10
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI 40
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

[Close]

BLAST of ClCG10G009400 vs. TAIR 10
Match: AT5G08670.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-08
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLA 32
           IYVPADDLTD APATTFAHLDA TVLSR ++
Sbjct: 387 IYVPADDLTDPAPATTFAHLDATTVLSRQIS 417

[Close]

BLAST of ClCG10G009400 vs. TAIR 10
Match: AT5G08680.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-08
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLA 32
           IYVPADDLTD APATTFAHLDA TVLSR ++
Sbjct: 390 IYVPADDLTDPAPATTFAHLDATTVLSRQIS 420

[Close]

BLAST of ClCG10G009400 vs. TAIR 10
Match: AT5G08690.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-08
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLA 32
           IYVPADDLTD APATTFAHLDA TVLSR ++
Sbjct: 387 IYVPADDLTDPAPATTFAHLDATTVLSRQIS 417

The following BLAST results are available for this feature:

BLAST of ClCG10G009400 vs. NCBI nr


Match Name	E-value	Identity	Description
QRN73536.1	6.7e-07	52.24	CF1 subunit beta [Phaeocystis globosa] >QRN73644.1 CF1 subunit beta [Phaeocystis...	[more]
AKF18314.1	6.7e-07	51.52	ATP synthase beta subunit, partial [Biddulphia alternans]	[more]
QRN73860.1	6.7e-07	52.24	CF1 subunit beta [Phaeocystis globosa]	[more]
AAX57072.1	8.8e-07	79.49	ATP synthase beta subunit, partial [Phyllanthus lokohensis]	[more]
AKF18324.1	8.8e-07	51.52	ATP synthase beta subunit, partial [Synedra fulgens]	[more]

BLAST of ClCG10G009400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5SCV8	2.0e-09	72.09	ATP synthase subunit beta, chloroplastic OS=Huperzia lucidula OX=37429 GN=atpB P...	[more]
Q95AF8	4.4e-09	61.11	ATP synthase subunit beta, chloroplastic OS=Aspidistra elatior OX=39526 GN=atpB ...	[more]
Q9TMV0	4.4e-09	61.11	ATP synthase subunit beta, chloroplastic OS=Beaucarnea recurvata OX=39519 GN=atp...	[more]
Q9TMU1	4.4e-09	61.11	ATP synthase subunit beta, chloroplastic OS=Convallaria majalis OX=32189 GN=atpB...	[more]
A6MML4	4.4e-09	61.11	ATP synthase subunit beta, chloroplastic OS=Dioscorea elephantipes OX=145284 GN=...	[more]

BLAST of ClCG10G009400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0F6YSU4	3.3e-07	51.52	H(+)-transporting two-sector ATPase (Fragment) OS=Biddulphia alternans OX=100302...	[more]
A0A0F6YSW1	4.3e-07	51.52	ATP synthase subunit beta (Fragment) OS=Rhizosolenia formosa OX=1334977 GN=atpB ...	[more]
A0A4D6WXG1	4.3e-07	53.73	ATP synthase subunit beta OS=Hypnea pannosa OX=105607 GN=atpB PE=3 SV=1	[more]
Q4VMZ5	4.3e-07	79.49	ATP synthase subunit beta (Fragment) OS=Phyllanthus lokohensis OX=287983 GN=atpB...	[more]
A0A0F6YSV0	4.3e-07	51.52	ATP synthase subunit beta (Fragment) OS=Synedra fulgens OX=1003018 GN=atpB PE=3 ...	[more]

BLAST of ClCG10G009400 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	5.3e-10	76.92	ATP synthase subunit beta	[more]
AT5G08670.1	8.5e-08	83.87	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	8.5e-08	83.87	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	8.5e-08	83.87	ATP synthase alpha/beta family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..42 e-value: 1.3E-7 score: 33.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G009400.1	ClCG10G009400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031090	organelle membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism