ClCG10G008280 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G008280
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	30S ribosomal protein S8, chloroplastic
Location	CG_Chr10: 16116462 .. 16116824 (+)
RNA-Seq Expression	ClCG10G008280
Synteny	ClCG10G008280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCACAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTACCGGTTTAGGTAAATCAAATATCTAATGCGCTCCCCGTCATGTTGACTATTATTCAAAATCAAGTAAGGAAGTCCTTTTCTTGACTTGGCCTGCGTGCATTATACCTACCCCTTTTAAAGAACTTGATTTCAATCTCAATAAAGAAATGAAAGCAACACTCTTTGCTTGTTGTCCTCTTACTCTTTGAGTCTGCCTTGTGGAGGTCTCTCGGGTGTCTACGGCAGATTCGATCAGTCTCGTGATGTTGGAATAG

mRNA sequence

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCACAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTACCGGTTTAGTCTGCCTTGTGGAGGTCTCTCGGGTGTCTACGGCAGATTCGATCAGTCTCGTGATGTTGGAATAG

Coding sequence (CDS)

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCACAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTACCGGTTTAGTCTGCCTTGTGGAGGTCTCTCGGGTGTCTACGGCAGATTCGATCAGTCTCGTGATGTTGGAATAG

Protein sequence

MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIVTGLVCLVEVSRVSTADSISLVMLE

Homology

[Close]

BLAST of ClCG10G008280 vs. NCBI nr
Match: QHB75999.1 (ribosomal protein S8 [Cucumis melo subsp. melo])

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIVTGLV 41
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV  LV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILV 40

[Close]

BLAST of ClCG10G008280 vs. NCBI nr
Match: YP_009431592.1 (ribosomal protein S8 [Citrullus amarus] >APW82498.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >APW82583.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >ASY96178.1 ribosomal protein S8 [Citrullus amarus])

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. NCBI nr
Match: YP_009525221.1 (ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8 [Trichosanthes kirilowii] >YP_009674426.1 ribosomal protein S8 [Siraitia grosvenorii] >YP_009738237.1 ribosomal protein S8 [Siraitia siamensis] >YP_009751941.1 ribosomal protein S8 [Cyclanthera pedata] >YP_009752362.1 ribosomal protein S8 [Bryonia marmorata] >YP_009752447.1 ribosomal protein S8 [Trichosanthes tricuspidata] >YP_009753293.1 ribosomal protein S8 [Nothoalsomitra suberosa] >YP_009753655.1 ribosomal protein S8 [Trichosanthes wallichiana] >QIT04085.1 ribosomal protein S8 [Luffa aegyptiaca] >QKX48510.1 ribosomal protein S8 [Luffa acutangula] >AXR94584.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94670.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94753.1 ribosomal protein S8 [Hodgsonia macrocarpa])

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. NCBI nr
Match: YP_009236314.1 (ribosomal protein S8 [Gynostemma pentaphyllum] >YP_009440192.1 ribosomal protein S8 [Gynostemma longipes] >YP_009440279.1 ribosomal protein S8 [Gynostemma burmanicum (nom. inval.)] >YP_009440366.1 ribosomal protein S8 [Gynostemma pubescens] >AMF84028.1 ribosomal protein S8 [Gynostemma pentaphyllum] >ANI25219.1 ribosomal protein S8 [Gynostemma pentaphyllum] >ART65011.1 ribosomal protein S8 [Gynostemma pentaphyllum] >ATG86939.1 ribosomal protein S8 [Gynostemma longipes] >ATG87026.1 ribosomal protein S8 [Gynostemma burmanicum (nom. inval.)])

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. NCBI nr
Match: AHM91246.1 (ribosomal protein S8 [Lagenaria siceraria])

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy Swiss-Prot
Match: Q4VZK0 (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIP+TNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPATNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy Swiss-Prot
Match: A4QL54 (30S ribosomal protein S8, chloroplastic OS=Draba nemorosa OX=171822 GN=rps8 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-09
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIA+IITSI NADMNRKGMVRI STNITE+IV
Sbjct: 1  MGKDTIADIITSIRNADMNRKGMVRIESTNITESIV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy Swiss-Prot
Match: Q09ME2 (30S ribosomal protein S8, chloroplastic OS=Citrus sinensis OX=2711 GN=rps8 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-09
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIA+IITSI NADMNRKG VRI STNITEN+V
Sbjct: 1  MGKDTIADIITSIRNADMNRKGTVRIASTNITENVV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy Swiss-Prot
Match: Q42362 (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata OX=4641 GN=rps8 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-09
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIA+IITSI NADMN+KG VRI STNITENIV
Sbjct: 1  MGKDTIADIITSIRNADMNKKGTVRIASTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy Swiss-Prot
Match: Q14FC2 (30S ribosomal protein S8, chloroplastic OS=Populus alba OX=43335 GN=rps8 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MG+DT+A+IITSI NADM+RKG VRIPSTNITENI+
Sbjct: 1  MGRDTLADIITSIRNADMDRKGTVRIPSTNITENII 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy TrEMBL
Match: A0A6B9M1H6 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rps8 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIVTGLV 41
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV  LV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILV 40

[Close]

BLAST of ClCG10G008280 vs. ExPASy TrEMBL
Match: A0A6H0ETL0 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps8 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 41/57 (71.93%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV-----TGLVCLVEVSRVSTAD 53
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV      G +  V   R ST D
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESTKD 57

[Close]

BLAST of ClCG10G008280 vs. ExPASy TrEMBL
Match: A0A249RZ88 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps8 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy TrEMBL
Match: A0A1S4EU50 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo OX=3656 GN=rps8 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. ExPASy TrEMBL
Match: A0A109WXX2 (30S ribosomal protein S8, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=rps8 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIANIITSI NADMNRKGMVRIPSTNITENIV
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIV 36

[Close]

BLAST of ClCG10G008280 vs. TAIR 10
Match: ATCG00770.1 (ribosomal protein S8 )

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-10
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MGKDTIANIITSIHNADMNRKGMVRIPSTNITENIV 37
          MGKDTIA+IITSI NADMNRKG VRI STNITE+IV
Sbjct: 1  MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIV 36

The following BLAST results are available for this feature:

BLAST of ClCG10G008280 vs. NCBI nr


Match Name	E-value	Identity	Description
QHB75999.1	4.3e-09	92.50	ribosomal protein S8 [Cucumis melo subsp. melo]	[more]
YP_009431592.1	7.4e-09	97.22	ribosomal protein S8 [Citrullus amarus] >APW82498.1 ribosomal protein S8 [Citrul...	[more]
YP_009525221.1	7.4e-09	97.22	ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8...	[more]
YP_009236314.1	7.4e-09	97.22	ribosomal protein S8 [Gynostemma pentaphyllum] >YP_009440192.1 ribosomal protein...	[more]
AHM91246.1	7.4e-09	97.22	ribosomal protein S8 [Lagenaria siceraria]	[more]

BLAST of ClCG10G008280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK0	2.2e-11	94.44	30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 ...	[more]
A4QL54	1.2e-09	88.89	30S ribosomal protein S8, chloroplastic OS=Draba nemorosa OX=171822 GN=rps8 PE=3...	[more]
Q09ME2	2.0e-09	86.11	30S ribosomal protein S8, chloroplastic OS=Citrus sinensis OX=2711 GN=rps8 PE=3 ...	[more]
Q42362	3.5e-09	86.11	30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata OX=4641 GN=...	[more]
Q14FC2	3.5e-09	80.56	30S ribosomal protein S8, chloroplastic OS=Populus alba OX=43335 GN=rps8 PE=3 SV...	[more]

BLAST of ClCG10G008280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9M1H6	2.1e-09	92.50	30S ribosomal protein S8, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN...	[more]
A0A6H0ETL0	3.6e-09	71.93	30S ribosomal protein S8, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rp...	[more]
A0A249RZ88	3.6e-09	97.22	30S ribosomal protein S8, chloroplastic OS=Cucumis melo var. cantalupensis OX=36...	[more]
A0A1S4EU50	3.6e-09	97.22	30S ribosomal protein S8, chloroplastic OS=Cucumis melo OX=3656 GN=rps8 PE=3 SV=...	[more]
A0A109WXX2	3.6e-09	97.22	30S ribosomal protein S8, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=...	[more]

BLAST of ClCG10G008280 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00770.1	5.5e-10	86.11	ribosomal protein S8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1370.30		coord: 1..41 e-value: 3.6E-12 score: 48.0
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 4..37 e-value: 5.4E-6 score: 26.4
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G008280.1	ClCG10G008280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome