ClCG10G008160 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G008160
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	agamous-like MADS-box protein AGL14
Location	CG_Chr10: 15065070 .. 15067766 (+)
RNA-Seq Expression	ClCG10G008160
Synteny	ClCG10G008160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTGTAATTTCACAATAATGTTGGTGGTACCTTACTAACTCATCATTCTTTTGTACTGAAAAGTAATTAGAAAAAGTATGATTTAGAGTTTTCTCAATCATTGTATTAGTTCATTCAAATGTACTAATTACCACTCTCTGAATAAAATTTGTCTTCCTTCTTTCCTCTTGTAAATTAACCCTCCTTTTCCTTAGAACTCTTCATTACATATTACTAAAATTTGGCAGTTGTATAATCTTGTTTGCCACTTAAACAAATAAGCACTTAAATAGATATTACTAATCTTGTTTGCTATTTATTTAACCTTTTTAATAGAACATAGGAACATCGATTGTTGACTTAATAAAGAAATGTTCTATATGATTGTTAAAACTGTAAATGATGAGTTCAAACGTCTGAATCAGTTCAGAGGTCTTAGGAACTACTTCCTTTGGGGCAAAATTCTTGCATTATGCTCATACCATACCCATAGGGCTATTCCTATTAATTGTTTAGAAGGCTTTGCCTATTCGAAGATCAATGGCTAGGGATGACAAGTATTTTAAATTATGAATGGCTATTTGATATTTTTAGCTTTTTGTTTTTGAAATTTATGCTTGTTTCTTCGCAATTATCTCACTCGTGTTGCTTTAAAGAAAACACATGAGTTATTTGTTAAATTTCAAAGACAAAAGCTATTTCTTCTTATTTCAAAACTTGACTTGATTTTTATAGCATTAATAGAAAGTTGATGACAAAAAAAAGGAACTTATAGGTGAAAGTTCAAATGATTATCAAACAAGACCCAAGTTTTCATCATTGGGTTTGAAACTCAAACTTGGGAGGGTACCTCCAAACATCTAGGTTCTTTTCATTGGAGTTAACAAAATTGTAGTTTGAGCATTGATGTTACTTTTTAAGTATAAGTGAAAAGTTCATCTTTTTTCCCCCTAAAAAAAGCAAACTTAAAAGGATAACTGTATGAAGCATTTGGTTTTTCATTTGACAGTCCAAAAGTGCTATATTACATGAACTTGCTTGTTTGTTAAACTAGGATCCATTTCATTGATTAAATGGACTTGTTTCTTCCTGGAATTAGTTTCTAATTGCTCCTCTATCTTAACTTGGGGAGAAAACAGGGAGGGAAATAAACATCTATAATTCTTTAGTTTTTATTTTTGGAAGTTCCTATAGCATTATTCACAAAATAAACTTCCCAGAAGAAATAAACAGTTTGAACTGTTCTACAACAGTTGAACTTTCCAACAGTTGATGCCAGAAAAAGTGAAAAGTTCCAAGGGCTCAAACCTTTAGTTTCCTTACTTCCTTAACAAGTTGATGAAGAATCTGATTGCACATTTACTCAATATCTTGGATGATATCTCCAAACACATCCCAATTCCAAAGGCCCTTACCAGTTACACCATCGTTCAATGGGATTTAAATTCCACAAATTTCAAAGTTGATTTTCTTTCTCTATGTTCTGCTGATCTTATCTATGAATATATTATGCTGAGAAACAATCTGAATTCCAACGGTTGTTGGTCACTGCAGGAAACAAAATTGATCTACATAGTTGTAAATGATATTTGGTTTATTTTGATCTGTCATTATTCGAACAGATCAGATCCAGGGTTCAAATTCATCGTCTTCATCCTACTTCCCCCATCGCCATTTTCACTGCTTAATGGTATTCGTATATCAATCCTCTTTTCGCTCTCATTAACTATATGCTCCACAGTAAGCTTTGTGTTGTTCAGCATTCTCTGTACCTGATGCTTCTCTATCCATTTTCTTGTTTTTGTTTTAATTTTCTTTTGTATCTTGTTGAGTTATTGATTTTTAGAATAATGAAATCTGCATAAGTTCTTTTGTTATATTATACGTTGCTGTGCATTTTTCTTCCCTTCCTTATATCTTTGGTTTTTTTCTTTTTAATGGATGTGTGTGTGAGGGCTTGAGATAGGTTGAGTGGTAGCTTTTTGTTTCTGATATTGGATGGTGTGGTTTCTATTGATTTAGTCATATTTTATCTCTGATTTCTGTTTGTCAACTAATTAGAGAGCTGGCATAATTTTGGAGGGTTGATTCTATTTCAGAGAAATGGTTGCCCCTCTATAAATTGGAGCTACCTCTTAAATTGGTGTTTGAGTGAAAGGCACTGCCAGTTCATTTGCCGCTAACTTATAACTAACTAATGATTCTTTGAATTTTACCTGCAGGCTGCAATTTTATAATTATTGGCATTGCTGGTTAA

mRNA sequence

ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTATCAGATCCAGGGTTCAAATTCATCGTCTTCATCCTACTTCCCCCATCGCCATTTTCACTGCTTAATGGCTGCAATTTTATAATTATTGGCATTGCTGGTTAA

Coding sequence (CDS)

ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTATCAGATCCAGGGTTCAAATTCATCGTCTTCATCCTACTTCCCCCATCGCCATTTTCACTGCTTAATGGCTGCAATTTTATAATTATTGGCATTGCTGGTTAA

Protein sequence

MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDLMEADYEDLFGQLCSENSVQMGGDSNPTTPLPNWASPNEEEVAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGNLSDPGFKFIVFILLPPSPFSLLNGCNFIIIGIAG

Homology

[Close]

BLAST of ClCG10G008160 vs. NCBI nr
Match: XP_038887059.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-37
Identity = 92/142 (64.79%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           +TD+F DRKRKIESETCKL +K    MCPKWDE L+ +SEHELREFMEGL+ KIEAANGM
Sbjct: 98  LTDYFSDRKRKIESETCKLREK---FMCPKWDEWLDRLSEHELREFMEGLDAKIEAANGM 157

Query: 61  IDLME-ADYEDLFGQLCSENSVQMGGDSNPTTPLPN-------WASPNEEEV-AMDEFNN 120
           ID ME AD+E+LFG+LCSENSVQMG DS P   +P+        A+  EE+V A+DE +N
Sbjct: 158 IDFMELADHENLFGELCSENSVQMGEDSIPQVLIPSVDDLFATGANHTEEDVMALDEIDN 217

Query: 121 SRYLQMGLEEEQEVNYMVHYTN 134
            RYLQM L EE+E NYM HY N
Sbjct: 218 IRYLQMLLGEEEEDNYMAHYAN 236

[Close]

BLAST of ClCG10G008160 vs. NCBI nr
Match: XP_038887053.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 5.9e-28
Identity = 78/133 (58.65%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           +TD+F DRKRKIESETCKL +K    MCPKWDE L+ +SEHELREFMEGL+ KIEAANGM
Sbjct: 98  LTDYFSDRKRKIESETCKLREK---FMCPKWDEWLDRLSEHELREFMEGLDAKIEAANGM 157

Query: 61  IDLME-ADYEDLFGQLCSENSVQMGGDSNPTTPLPN-------WASPNEEEV-AMDEFNN 120
           ID ME AD+E+LFG+LCSENSVQMG DS P   +P+        A+  EE+V A+D  + 
Sbjct: 158 IDFMELADHENLFGELCSENSVQMGEDSIPQVLIPSVDDLFATGANHTEEDVMALDAVS- 217

Query: 121 SRYLQMGLEEEQE 125
             Y  + + + QE
Sbjct: 218 --YTHLDVYKRQE 224

[Close]

BLAST of ClCG10G008160 vs. NCBI nr
Match: XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-25
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSNPTTPLP-----------NWASPNEEEVAM 120
           +D M+AD E+LFG   C   EN VQMGGDS  +TP+P           N  +PN+ E+  
Sbjct: 157 VDFMDADNENLFGMFSCEEYENVVQMGGDS--STPVPPLVELESPDSLNSPNPNKHEIGC 216

Query: 121 DEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           + F N  +L   LE+E E NYM  Y NLMN EF   N+IE   + TGN
Sbjct: 217 N-FENLEFL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 256

[Close]

BLAST of ClCG10G008160 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-25
Identity = 83/169 (49.11%), Postives = 106/169 (62.72%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSN-PTTPL-----------PNWASPNEEEVA 120
           ID M+AD E+LFG   C   EN VQMGGDS+ P  PL           PN  +PNE+E+ 
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVPPLVELESPDSLNTPN-PNPNEDEIG 216

Query: 121 MDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
            + F N  +L   LE+E E NYM  Y NLMN E    N+IE   + TGN
Sbjct: 217 CN-FENLEFL---LEDEDE-NYMALYANLMNDELDECNDIEQ-WLRTGN 258

[Close]

BLAST of ClCG10G008160 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSNP--------------TTPLPNWASPNEEE 120
           ID M+AD E+LFG   C   EN VQMGGDS+                +P PN   P+E+E
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVLSLVELESTDSLNSPNPN---PDEDE 216

Query: 121 VAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           +  + F N  YL   LE+E E NYM  Y NLMN EF   N+IE   + TGN
Sbjct: 217 IGCN-FENLEYL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 258

[Close]

BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match: A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-26
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSNPTTPLP-----------NWASPNEEEVAM 120
           +D M+AD E+LFG   C   EN VQMGGDS  +TP+P           N  +PN+ E+  
Sbjct: 157 VDFMDADNENLFGMFSCEEYENVVQMGGDS--STPVPPLVELESPDSLNSPNPNKHEIGC 216

Query: 121 DEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           + F N  +L   LE+E E NYM  Y NLMN EF   N+IE   + TGN
Sbjct: 217 N-FENLEFL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 256

[Close]

BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSNP--------------TTPLPNWASPNEEE 120
           ID M+AD E+LFG   C   EN VQMGGDS+                +P PN   P+E+E
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVLSLVELESTDSLNSPNPN---PDEDE 216

Query: 121 VAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           +  + F N  YL   LE+E E NYM  Y NLMN EF   N+IE   + TGN
Sbjct: 217 IGCN-FENLEYL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 258

[Close]

BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match: A0A6J1CQB5 (uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4   FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
           +F DR +KIE+E  K     +D+ CP WDERLE +S H+LR  ME L  K E A GMI  
Sbjct: 70  YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129

Query: 64  ME 66
           ME
Sbjct: 130 ME 131

[Close]

BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match: A0A6J1CQB2 (uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4   FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
           +F DR +KIE+E  K     +D+ CP WDERLE +S H+LR  ME L  K E A GMI  
Sbjct: 70  YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129

Query: 64  ME 66
           ME
Sbjct: 130 ME 131

[Close]

BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match: A0A6J1CNU9 (uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4   FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
           +F DR +KIE+E  K     +D+ CP WDERLE +S H+LR  ME L  K E A GMI  
Sbjct: 70  YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129

Query: 64  ME 66
           ME
Sbjct: 130 ME 131

The following BLAST results are available for this feature:

BLAST of ClCG10G008160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887059.1	1.8e-37	64.79	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_038887053.1	5.9e-28	58.65	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_022935361.1	1.2e-25	48.21	agamous-like MADS-box protein AGL14 [Cucurbita moschata]	[more]
XP_023528957.1	3.6e-25	49.11	agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo]	[more]
XP_022983430.1	4.7e-25	47.95	agamous-like MADS-box protein AGL14 [Cucurbita maxima]	[more]

BLAST of ClCG10G008160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G008160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4C8	5.9e-26	48.21	agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227...	[more]
A0A6J1J5U6	2.3e-25	47.95	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]
A0A6J1CQB5	4.3e-08	51.61	uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQB2	4.3e-08	51.61	uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CNU9	4.3e-08	51.61	uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 G...	[more]

BLAST of ClCG10G008160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G008160.2	ClCG10G008160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding