ClCG10G008140 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G008140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	CG_Chr10: 14899591 .. 14899965 (+)
RNA-Seq Expression	ClCG10G008140
Synteny	ClCG10G008140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAACGCCAATTCCCTGGGAAATTCGTCTGTCACCTCTACAAACTTTAGCAGTCCACCATTGAATCAATTACTAAGCCAAATCACTGGCATAAAGCTCGATCGAGGGATACCTATTGTGGAAAACACTTGCAGTACCAATTTTGTGCAGTTACAAACTAAAGGGGCATCTGTTAGGAGAAAAACCCGCTCTCCAAGGTTCATTCAGTCGTCTTTTGGAGCGTCGAGTTCGTTTGGAACTGAGAATGCATCTGAAGCAGAACCTACAAGATCCATGGCTAAAAATACAACTAATCTACAGTATGAACAGTGGGTTACAATCGATCAATTATTGCTCGGTTGGTTGTACAATAGTCCAATTGATGGGGTTTGA

mRNA sequence

ATGGTAAACGCCAATTCCCTGGGAAATTCGTCTGTCACCTCTACAAACTTTAGCAGTCCACCATTGAATCAATTACTAAGCCAAATCACTGGCATAAAGCTCGATCGAGGGATACCTATTGTGGAAAACACTTGCAGTACCAATTTTGTGCAGTTACAAACTAAAGGGGCATCTGTTAGGAGAAAAACCCGCTCTCCAAGGTTCATTCAGTCGTCTTTTGGAGCGTCGAGTTCGTTTGGAACTGAGAATGCATCTGAAGCAGAACCTACAAGATCCATGGCTAAAAATACAACTAATCTACAGTATGAACAGTGGGTTACAATCGATCAATTATTGCTCGGTTGGTTGTACAATAGTCCAATTGATGGGGTTTGA

Coding sequence (CDS)

ATGGTAAACGCCAATTCCCTGGGAAATTCGTCTGTCACCTCTACAAACTTTAGCAGTCCACCATTGAATCAATTACTAAGCCAAATCACTGGCATAAAGCTCGATCGAGGGATACCTATTGTGGAAAACACTTGCAGTACCAATTTTGTGCAGTTACAAACTAAAGGGGCATCTGTTAGGAGAAAAACCCGCTCTCCAAGGTTCATTCAGTCGTCTTTTGGAGCGTCGAGTTCGTTTGGAACTGAGAATGCATCTGAAGCAGAACCTACAAGATCCATGGCTAAAAATACAACTAATCTACAGTATGAACAGTGGGTTACAATCGATCAATTATTGCTCGGTTGGTTGTACAATAGTCCAATTGATGGGGTTTGA

Protein sequence

MVNANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQLQTKGASVRRKTRSPRFIQSSFGASSSFGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLYNSPIDGV

Homology

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BLAST of ClCG10G008140 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 4   ANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASVRRK 63
           AN++      +TNFS+PPLNQLL+Q++ +KLDRG  ++  T +   ++  + +G      
Sbjct: 2   ANAVSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGEN 61

Query: 64  TRSPRFIQSSFGASSS--FGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLYNS 120
              P+FI +  G S S   GT  A++   +RS A  T N +++QW+T   LLLGW+YNS
Sbjct: 62  PCPPKFITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYNS 120

[Close]

BLAST of ClCG10G008140 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 4   ANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASVRRK 63
           AN++      +TNFS+PPLNQLL+Q++ +KLDRG  ++  T +   ++  + +G      
Sbjct: 2   ANAVSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGEN 61

Query: 64  TRSPRFIQSSFGASSS--FGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLYNS 120
              P+FI +  G S S   GT  A++   +RS A  T N +++QW+T   LLLGW+YNS
Sbjct: 62  PCPPKFITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYNS 120

[Close]

BLAST of ClCG10G008140 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 1   MVNANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASV 60
           M NA SL  SS  +TNFS+PPLNQLL+Q++ +KLDR   ++  T +   ++  + +G   
Sbjct: 1   MANAVSLVESS--TTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLT 60

Query: 61  RRKTRSPRFI--QSSFGASSSFGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLY 120
                 P+FI  Q++   S   GT  A++   +RS+A  T N +++QW+T   LLLGW+Y
Sbjct: 61  GENPCPPKFITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLGWIY 120

[Close]

BLAST of ClCG10G008140 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 1   MVNANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASV 60
           M N  SL  SS  +TNFS+PPLNQ+L+Q+  +KLDRG  ++  T +   ++  + +G   
Sbjct: 1   MTNGVSLIGSS--TTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLT 60

Query: 61  RRKTRSPRF-IQSSFGASSSFGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLYN 120
                 P+F I  + GASS             RS    T N +++QWVT D LLLGW+YN
Sbjct: 61  EENQCPPKFIINPTCGASS-------------RSTTTKTVNPKFDQWVTFDLLLLGWMYN 106

[Close]

BLAST of ClCG10G008140 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 1   MVNANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQLQTKGASVR 60
           M NA + G+S   ST FS+PPLNQLL+QIT  KL+RG  ++  T +   +    +G  + 
Sbjct: 1   MANAIATGSSIGESTKFSTPPLNQLLNQITNTKLERGYFMLWKTLALPIL----RGYKLE 60

Query: 61  R-----KTRSPRFIQSSFGA--SSSFGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLL 120
           R     K  SP F  S+  +  +  FG++ +  A  + +  + T N  YE WVT DQLLL
Sbjct: 61  RHLSGTKICSPMFTVSTIPSIETGDFGSQASGGA--SSATGERTFNPLYEVWVTADQLLL 120

[Close]

BLAST of ClCG10G008140 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 4   ANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASVRRK 63
           AN++      +TNFS+PPLNQLL+Q++ +KLDRG  ++  T +   ++  + +G      
Sbjct: 2   ANAVSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGEN 61

Query: 64  TRSPRFIQSSFGASSS--FGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLYNS 120
              P+FI +  G S S   GT  A++   +RS A  T N +++QW+T   LLLGW+YNS
Sbjct: 62  PCPPKFITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYNS 120

[Close]

BLAST of ClCG10G008140 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 4   ANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASVRRK 63
           AN++      +TNFS+PPLNQLL+Q++ +KLDRG  ++  T +   ++  + +G      
Sbjct: 2   ANAVSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGEN 61

Query: 64  TRSPRFIQSSFGASSS--FGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLYNS 120
              P+FI +  G S S   GT  A++   +RS A  T N +++QW+T   LLLGW+YNS
Sbjct: 62  PCPPKFITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYNS 120

[Close]

BLAST of ClCG10G008140 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 1   MVNANSLGNSSVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQ-LQTKGASV 60
           M NA SL  SS  +TNFS+PPLNQLL+Q++ +KLDR   ++  T +   ++  + +G   
Sbjct: 1   MANAVSLVESS--TTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLT 60

Query: 61  RRKTRSPRFI--QSSFGASSSFGTENASEAEPTRSMAKNTTNLQYEQWVTIDQLLLGWLY 120
                 P+FI  Q++   S   GT  A++   +RS+A  T N +++QW+T   LLLGW+Y
Sbjct: 61  GENPCPPKFITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLGWIY 120

[Close]

BLAST of ClCG10G008140 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.2e-08
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 11  SVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQLQTKGASVRRKTRSPRFIQ 70
           S++S  FS+PPLNQ+L+Q+T +KLDR   ++  T +   ++       +  +T  P    
Sbjct: 12  SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

Query: 71  SSFGASSSFGTENASEAE--PTRSMAKNTTNLQYEQWVTIDQLLLGWLYNS 120
            S  +S++  TE  ++A    + S+     N  +EQWVT D LLLGWLYNS
Sbjct: 72  LSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 122

[Close]

BLAST of ClCG10G008140 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.2e-08
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 11  SVTSTNFSSPPLNQLLSQITGIKLDRGIPIVENTCSTNFVQLQTKGASVRRKTRSPRFIQ 70
           S++S  FS+PPLNQ+L+Q+T +KLDR   ++  T +   ++       +  +T  P    
Sbjct: 12  SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

Query: 71  SSFGASSSFGTENASEAE--PTRSMAKNTTNLQYEQWVTIDQLLLGWLYNS 120
            S  +S++  TE  ++A    + S+     N  +EQWVT D LLLGWLYNS
Sbjct: 72  LSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 122

The following BLAST results are available for this feature:

BLAST of ClCG10G008140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060627.1	1.6e-10	38.66	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	1.6e-10	38.66	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_016901223.1	1.4e-09	40.16	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]
XP_031745012.1	2.0e-08	39.67	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_038887015.1	2.6e-08	40.48	uncharacterized protein LOC120077182 [Benincasa hispida]	[more]

BLAST of ClCG10G008140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G008140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVJ1	7.9e-11	38.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1E0	7.9e-11	38.66	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DZ26	6.7e-10	40.16	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]
A0A1S4E1U9	8.2e-08	36.94	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	8.2e-08	36.94	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of ClCG10G008140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G008140.1	ClCG10G008140.1	mRNA