ClCG10G008010 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G008010
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	S locus-related glycoprotein 1 binding pollen coat
Location	CG_Chr10: 13010465 .. 13013277 (+)
RNA-Seq Expression	ClCG10G008010
Synteny	ClCG10G008010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCTAGTTCCTTCTTCCAGTATTATTTTCATTGCTCTTATTTTTGCAGGTTTTCCTTCTTGTTCCTAAATACTATTTTATCCATTAGGCATGTTACGATATCTCTATTTAATCATTTTAGGAATTTCATGAGTCTTCTAACAAATCTATCAACCTTTTAATATCTTTGAGATATTGACACTCTTGTTGACCTAAATAGTAAAATTTTTTGTTATAATAGGATATTCCTAATTGTCTATTTATTTATTATTCTTTTTGTTATTGTATATAGTTTCATTGATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAGATGTCAAGATATATTGTATAACAATGGCTGCACTCTTGATGGTTGCGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCACTCCAACTAATCCTGCTCAAACCATCTATGCTTGTTATTGTTTTTTTGATTGCGGTAAAAAAAATTGATTTTGTGGCATCATTCTAATTTAATGTAATGTTTCTCACAAATTTCCAATAATATGAGAAGCCTTCTCTAATCTTTGTCCATTGTGTCTCAATAACTTCTAGATATTATTGTCTTAAAACTAATATTGTTGCCGTTGCTGGATCCATTTAATTATGTTTCCTTCTTGATTTTGATTATTTTGTTCTTGATAATAATATCTAATAGATGTTTCAATCTCTAATTGGTTTAATTTAAACCCTTGGTTACCAGTTCTTTAGTCACAAGAGTGATGTTCAATAAGAGACGCTTTGGTAAGCTTTATCCTTTTTAAATGGAAAATTTATAGCAGCCATTTAGGGATTAATTTTGTGTAGATAATTCATTTTCATCTTAGATTGTGCTTGTGTCGTTTAGTCAAAGCAAGGTTTTGGCAATTACAGAACTTCTAATATGAACGGAGGAACCTAAATCAGGCCATATGAACATCATGAAAGACATCAAGAATGAGCCATACATGCTGTCCAAGTTTATGCTAACCAAAGAAGAAGAATTATGTGAAGTCAAGTGAAATTTATGAAGAATCAAACTTCATTTAATGAAGAAAGACAAGATACTTCAAATGGGATGCCACTTACTCTTGGATGGTTACAAATGCATGGAATATGGATGAAAAATACTAATCTCGGGTTTATTGTATTTATTAAGTGTATTTTTCAGTTTTGAGTCATTTTGTGTGTTCTTATGTTATAATTTGATCATGGCTGATCATGGTCATTAATTATGAGTGTTACACCATTTTAGATGCCTCATGAAATGTCTATGGTTATATTTTGAGGCCTATATAATGTCATGTAATTGTTCAAAAAAAGAAACTTGGAAGACACTTGGAAAATTTAGGAAAAAGAGCCTTTGAGCTTTCTTGAGCCTTATGCATTGTTTATTTTTCAATCCTATGATGTTTAGATTGCATGTCCATAATCATTGAAGCTTGACTTGATCGATCTTGCTTGTCGAGTGGTTCGAAGATCAAGGGTCGATTGAAGCATTAAGCTTTGTCTGCTTCGTGGTTTTGCTGATCGTCTAAGTCATCCATCATCAAGCTATTCTTAGGGGCTGAGATCATCTTGATTAAAAACAACTTAAGAACAAAGTCTCTTAGGCATAACAACTTTTCTTCTCCTGACTAATTTTCATAACGCAAAAGTTTGACATGGAAGGAAGTTGAATTTGAAGATAAAAAAAGAAATTTTGTAATAATACTTAAAGTTTATGAAAATATGAAAACATGACTAGATATGAGACTTTTTTTTTCGAGTATCATAAAATAGACAGAGGACGAGATGAATAGAAAAAATAAAAAAACAGAAACAACCGAAACATATATCTGATCTAGAGCCTAAGCACTGATACCAAATGATAAGTTACCCTCGAGGATTTGGATCTAACAACCTTGTTGATGAACAAAACTCCATTTTAAATCCATTTTCATAATGTCATTAAATGTCATTATCATTTGAAAATTTTTCAACCTATAAGAATTGAACAAGGACATAGTGATATAAGTGATAGAAGAAGTATAGAAAGTGTAATTCAGATATTTTAGAGAAATAACTTAGATAATCCTTAATAATCCCTTAAAAAGTCGAGAGGGGTGCGCATGGGTTTCACTCACTTCTCTGTTCTCTCTCTTCTTTCGAGAGATCCACAGACAGCTTGTGCTGTTGGTTTGGATCATATATGGCGTTCAATTTGGTGGTGTTGGGGCTGGATCTCTTGTATCTTCCAGTTTTTGTCCTTCTCTAAGTCAACCCTATTCTGAAATCGATTGGTTCAGTTCGAGAGGGTGTTGCTCTATTCTCTCTCATCTTGGGATGCTTGCGAACTGTTGAAGTTTGGGTTTGGCGATCGTTAGTTCTGTTGGTGGAAGCACCATGTTTGTTTAGAGTTTTCTGCGATTGAATCTTGACTAAACCTTCAATGGCTAAAAGGAGATCTCCTCTCCGAGGTTTAAAGGAGAAAGAGGGAAGCTCTGGTTCCCTTGGTTATCGTCATCCTCAGCTGAGCTCGGAGTCGATCCATGCCTCCAGATCTGTCACGAAATAAGCGGAGGATGAGTAGTCAAGTGGTGTCTGAGGGTATTGCTGTTGCAATGGAGGTAGTTAGAGATTGCGTTCTTTGGCAACTACAGAATACTCACCTGGTGGCGGCAGAAGCTAGGAAGACGTTGATGGATGCCTTAGAACCAACTCCGCTTTGGTCTAATGAGGATGATTTGACTGAATCGGTTGTTTTGGGTCATAAGCGGGTAGGCGGATGGGCGACGTTGTTGGAGGATGTCCATGTAGCTTGGTGA

mRNA sequence

ATGGCGAAGCTAGTTCCTTCTTCCAGTATTATTTTCATTGCTCTTATTTTTGCAGTTTCATTGATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAGATGTCAAGATATATTGTATAACAATGGCTGCACTCTTGATGGTTGCGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCACTCCAACTAATCCTGCTCAAACCATCTATGCTTGTTATTGTTTTTTTGATTGCGCTCGGAGTCGATCCATGCCTCCAGATCTGTCACGAAATAAGCGGAGGATGAGTAGTCAAGTGGTGTCTGAGGGTATTGCTGTTGCAATGGAGGTAGTTAGAGATTGCGTTCTTTGGCAACTACAGAATACTCACCTGGTGGCGGCAGAAGCTAGGAAGACGTTGATGGATGCCTTAGAACCAACTCCGCTTTGGTCTAATGAGGATGATTTGACTGAATCGGTTGTTTTGGGTCATAAGCGGGTAGGCGGATGGGCGACGTTGTTGGAGGATGTCCATGTAGCTTGGTGA

Coding sequence (CDS)

ATGGCGAAGCTAGTTCCTTCTTCCAGTATTATTTTCATTGCTCTTATTTTTGCAGTTTCATTGATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAGATGTCAAGATATATTGTATAACAATGGCTGCACTCTTGATGGTTGCGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCACTCCAACTAATCCTGCTCAAACCATCTATGCTTGTTATTGTTTTTTTGATTGCGCTCGGAGTCGATCCATGCCTCCAGATCTGTCACGAAATAAGCGGAGGATGAGTAGTCAAGTGGTGTCTGAGGGTATTGCTGTTGCAATGGAGGTAGTTAGAGATTGCGTTCTTTGGCAACTACAGAATACTCACCTGGTGGCGGCAGAAGCTAGGAAGACGTTGATGGATGCCTTAGAACCAACTCCGCTTTGGTCTAATGAGGATGATTTGACTGAATCGGTTGTTTTGGGTCATAAGCGGGTAGGCGGATGGGCGACGTTGTTGGAGGATGTCCATGTAGCTTGGTGA

Protein sequence

MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARSRSMPPDLSRNKRRMSSQVVSEGIAVAMEVVRDCVLWQLQNTHLVAAEARKTLMDALEPTPLWSNEDDLTESVVLGHKRVGGWATLLEDVHVAW

Homology

[Close]

BLAST of ClCG10G008010 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-23
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 20 SLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFF 79
          +L+L  Q  SAAQRCQD+LYN GC L+ CGKKCWEKHH+ISHQC PTNP+QTIYACYCFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 80 DCARSRS 87
          DC   ++
Sbjct: 61 DCGGQKN 67

[Close]

BLAST of ClCG10G008010 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSIS 60
          M KL  SS I+ IAL  AV++ILVPQGA A +RCQD LY+ GCTL  CG+KCWEKHH  S
Sbjct: 1  MTKLY-SSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDAS 60

Query: 61 HQCTPTNPAQTIYACYCFFDCARS 85
          HQC PT+P QTIYACYCF++C ++
Sbjct: 61 HQCIPTDPGQTIYACYCFYNCGQN 83

[Close]

BLAST of ClCG10G008010 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-21
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSIS 60
          M KL  SS I+ I LI AV++I +PQGA AA RCQDILYN+GCTL  CG+KCWEKHH  S
Sbjct: 1  MTKLY-SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEAS 60

Query: 61 HQCTPTNPAQTIYACYCFFDC 82
           QC PT+P QTIYACYCF+ C
Sbjct: 61 RQCIPTDPDQTIYACYCFYTC 79

[Close]

BLAST of ClCG10G008010 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MAKLVPSSSIIFIALIFAVSLILVPQG--ASAAQRCQDILYNNGCTLDGCGKKCWEKHHS 60
          MAK   +  ++ I L+F+V  + +P    A A +RCQ ILY  GCTL  C KKC++K  S
Sbjct: 1  MAKFSYTYLLLLIVLVFSVISMAMPVAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGS 60

Query: 61 ISHQCTPTNPAQTIYACYCFFDCAR 84
          I  QC PTN AQTIY C C ++C R
Sbjct: 61 IGGQCIPTNQAQTIYECLCVYNCHR 85

[Close]

BLAST of ClCG10G008010 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-11
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 24  VPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC 82
           VPQ A A +RC + LY +GCTL  CGKKCWEKHH   ++C   N AQT YACYC F+C
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

[Close]

BLAST of ClCG10G008010 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 7  SSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPT 66
          SS II  ALIFAV+L+L  Q  SAAQRCQD+LYN GC L+ CGKKCWEKHH++SHQC PT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 67 NPAQTIYACYCFFDCARSRS 87
          NP+QTIYACYCFFDC   ++
Sbjct: 63 NPSQTIYACYCFFDCGGQKN 82

[Close]

BLAST of ClCG10G008010 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSIS 60
          M KL  SS I+ IAL  AV++ILVPQGA A +RCQD LY+ GCTL  CG+KCWEKHH  S
Sbjct: 1  MTKLY-SSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDAS 60

Query: 61 HQCTPTNPAQTIYACYCFFDCARS 85
          HQC PT+P QTIYACYCF++C ++
Sbjct: 61 HQCIPTDPGQTIYACYCFYNCGQN 83

[Close]

BLAST of ClCG10G008010 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSIS 60
          M KL  SS I+ I LI AV++I +PQGA AA RCQDILYN+GCTL  CG+KCWEKHH  S
Sbjct: 1  MTKLY-SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEAS 60

Query: 61 HQCTPTNPAQTIYACYCFFDC 82
           QC PT+P QTIYACYCF+ C
Sbjct: 61 RQCIPTDPDQTIYACYCFYTC 79

[Close]

BLAST of ClCG10G008010 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.6e-12
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 7  SSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPT 66
          S  +  I +IFAVS+ILVPQG SA  +CQD LY  GC    CG+KC + HH  + +C  T
Sbjct: 23 SFRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGTSKCIST 82

Query: 67 NPAQTIYACYCFFDC 82
          +P  T YACYCF++C
Sbjct: 83 DPTFTKYACYCFYNC 96

[Close]

BLAST of ClCG10G008010 vs. ExPASy TrEMBL
Match: A0A1R3JKF5 (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MAKLVPSSSIIFIALIFAVSLILVPQG--ASAAQRCQDILYNNGCTLDGCGKKCWEKHHS 60
          MAK   +  ++ I L+F+V  + +P    A A +RCQ ILY  GCTL  C KKC++K  S
Sbjct: 1  MAKFSYTYLLLLIVLVFSVISMAMPVAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGS 60

Query: 61 ISHQCTPTNPAQTIYACYCFFDCAR 84
          I  QC PTN AQTIY C C ++C R
Sbjct: 61 IGGQCIPTNQAQTIYECLCVYNCHR 85

The following BLAST results are available for this feature:

BLAST of ClCG10G008010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649772.1	1.8e-23	71.64	hypothetical protein Csa_012405, partial [Cucumis sativus]	[more]
KAA0042348.1	4.1e-23	65.48	S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T...	[more]
KGN64987.1	2.9e-21	67.90	hypothetical protein Csa_022748 [Cucumis sativus]	[more]
OMO95288.1	3.6e-11	48.24	S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius]	[more]
BBH07492.1	8.0e-11	60.34	hypothetical protein Prudu_019451 [Prunus dulcis]	[more]

BLAST of ClCG10G008010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G008010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2R3	2.3e-27	71.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1	[more]
A0A5A7THQ7	2.0e-23	65.48	S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O...	[more]
A0A0A0LVZ5	1.4e-21	67.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1	[more]
A0A0A0KYP7	4.6e-12	52.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1	[more]
A0A1R3JKF5	1.7e-11	48.24	S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937...	[more]

BLAST of ClCG10G008010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 31..81 e-value: 6.9E-5 score: 23.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G008010.1	ClCG10G008010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044419	biological process involved in interspecies interaction between organisms