ClCG10G006825 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G006825
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase
Location	CG_Chr10: 9680933 .. 9685114 (+)
RNA-Seq Expression	ClCG10G006825
Synteny	ClCG10G006825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGGACAACAACTTGGTTTTGAAGCTGTGGAAAAACTTCTTCCTCCCACTAATGTGGAAAAACTTCGTAAGTAAGAAAGAGAGAAGATCGAAGTTGTGGAAAAACTTCCTCCTCCCACTAATTTAAAACATTAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAATTGCCCCCCCCCCCCCCCAGCGCATTGTTGGAATTGAACTGACCCTGTGTTTTCTATGATCAATGTTGAGAAGCTTTTGAAACACTGAAGACAGTATTAGTGACAACACCCATTTTTATAGCCTCGGATTGGATGCAGCCATTCGAGCTTATTGGATGCAGCGATTCGAGTTTATGTGCAACACCATGGGAGTTACGTTAGTTCAACGCAGAGACAAGGTGCTTCACCCAATTTCCTATGCCAGCAAGCGCTCAATGAAGCATAAGAGAATTATACAATAACAGAAAAAGAGTCGCAAGCTTTAGTATTCGCTGTAGAGAGGTTCAGAGCTTACTTACTAGGGTCAAAAGTCAGCATTCATACAGACCACTCTGCAATCAAACATGTGATGCCAAGCCAAGGCTTATTACATGGATCCTTCTTCTCCAAGAGTTCGATGCGGAGATTATTGATAGGAAAGGAACCGAGATGAATGTGGCCGATCACCTCTCTAGACTTAAAAATGTTGAAATTGATAGGAAACAACCTAAAGTCAATGCCAGTTTTCCTGATGAAGTTGTACTGAAAGTCGAGGAATCTGTTCCTTGGTATGTTGATATCGTAAATTCTCTGGTGTGTAAGCCATTTGTAGAAGATTTCAACACACACTAGAAGAAGAAGCTGATGCTTGACGCGAAGTTTTACTATTGGGATGAGCCTTAACTCTACAAAAGGGGCCTTGTGATAGCATCTAAAATGTGCTATCTTCCTTAGCTTAACTCGGGAACGTTGTATTATTAATGTGTTCAAAATATTATTTTGTAGGTTTCGAGCACTTAACAGGTAGAGCGGGGCATTAATGAAAAAATGGAGCTAAAACAGACTGAAACGGAGTTTTATTGCATCAACCGGAAAAGAAAACTCCAAAAAGACCAAATTGCCCCTGAAGCCACAACATAGCGGCACTTTTTCCCGAAGGCAAAAATTTTTTGTGAAGCGCGAAAGTGCCGCGGCACTCCAACCAATCTATAAGTGCATTCCTTGATTTTTAGGTCAGATTAGCCACAAGCCGACTCAAGGTCGAATTCTCTCAACACTTCCTTTATTTCTCATCTATTTATGCATCGAAACTCGAACCCATTAATCGTGATGTCGATTATGGGCTAAGGTAATTAGTTCTAGCTTGGGTTTTTACAGATTTTCTTTCACTTTAATGTTCTTATGAGTTTTTGAACTAAATTCTATTGTATGTATGATTTTGATTTTGGATTTTAAAGTATTACGATCATTTTAGTAGATGCTAACTACTGTGATCATCGTTTTAGATTGATATACGATTCGTGACACTTGGTTGTATGCTAATCATAGGAAGCAATAGGTTAGATGAGCTTGTGAATCTAAATCGATAAGTATTGTTCTAATCAACCTAAAATTGAATCAATAGAATATTTGATTTCGGACTTTCCACTTAAATTTTCTGCCTAATTCTCCATAGAACTTATTCTAGTTAGGGTAAACTTGAATTTTGCATGCCTATCATCGATTAAATTTATCTTAATTCGTCGATTAGGGCGATTTAATTAGCCTTTCTCATTAAATTGATTAGGTGCAAACTACAATAAATTCAGTAATGATGACTCGATGATTAAGAACATTGAATAAAGAAAATTTCGTTGTAACCCAAGCTAGGCGTTTTTTTTATTATTATCACAACCTTCATTTTTAGTTTAGTACAATTTAAGATTTCATTATTTTCTTGCAATAAACCATTTTAAAACACCCTCCTTCGATTACCAGAATTGATAACTACTTGAATGAGAAATTCAATTGCTCCTGGTGTTCAACCCGACCTTGCCACTACTACTGTTGGGTAAGTACAAAATATTATTTGGCATAAAATTGGCGACAAATTTTATACACCAAATTGGTGTCGTTGTCGGGTAGCCAAGAAATTTCTCTTTTAAGGACTTTTTAGTTCTTTTTCGCTCTTTAATTTTTCCTCCATTGTATTACCCAATCCTCCCAAGATCCAAATGAAGGAGTTAGCAACATAATAGCGGAAATAATTAGGTTCTAATGAACTCTAATTACATTAATTTTGAAGATTAAACATGCTTGTTCTTTGAATTTCTAATCACAAACACTTTGTGGACAACCTCTAGTGTCCTCCTTGTTATCCTCAGGCCTTAAAACAAATTGTGGGATCCAAATTAAGCTGAATTTGGAGCAACAAGGTGAAAGAACTAGTTTTTATGGAATTTGAGTAGGAGAGTAATTTAACAGAAATTAGCTAAAAACATCGACCTTATTCTTTAATTCCTCTCATCTATATAAAGAGAAGAGCATGCAGATCTCACCAAAATGCATGAAGCCAACAAATTGACTGATTAAATCAACCAATTTGGAGGTGAAAGAAGAAGAAGAAGAAGATGGTGTTTGCATAACGAACACCACCTACATCACATGCATAGTGGAGAAATCCAAAATCCAATTCTTAATTGAATTTTGACTTTTCAATTTCACAAATTGAATTTTAATTTAAAATTAATTTTCAAAAAATCAATTTTAAATAAAATTAATTTAATATAAAATTAATTTAAATTATAACTAATTAAATAATTAATTAATTATATTATATTAATTATTTCTCCACTATTCCTGGCAAATTCCAACCCGATGAATCTATTAATCCTAAAAAATATTTAAATCACATTTAAACATTTCTAACTCTCCGAATTCATCTAATTCATAATTAAACGAACAAACCATATAATTTGCTCTAAACTTGAACATTTGAAATTCACTAAATATATTGTTCTAACGTTTATTCCATAAGCTAACAAGAGGGCCTAATGAACCTACAGACCATGATCTCCAACGATCTGAAATTAATCGACTAAACTCTTTAACCTAGTTAATTAATATTTGTTAACTACTGGGTCATTCCACTAAAGCTCAGTAGTTGCACTGTCCTTATTGTAGATATATTTCTGTCCACTTGATGTAACCATAATAAATAAGTCAATCCTTCACAAGTTGTTCTAATTACAGCTGGGTCAAAAAATACCGTTTTACCCCTGTAATTACATCTTGTTTCTTATGTCCCAATGATTCTCTAATGAACAATTGGTTTGTGGTCCAACCAACAAACCTAGTCTCTCTCGAGCCAATGAGAGGGTGGGACCCCTTGTTTAAGTCCCGGAATTAGTACTTAAGAGAACAACTTATCTATTAACCTAGTAATAGGTAGTAGTGAATTCATCATGCAATACTATGTTCCCAGCTATCTGTCTAATCTTATACTTAAAATGGGAGGCATATTGAGTCAGCAAACTTGGGTCACTCTCACCTATCCATATTTAAGGATAATCTCAAACAGACAGAAGTTCATAGTTGGCTTAGAATTGAGATCAAGTTACCTAAGTCGTCAGTTTGAAATAATCAGTTTTAACGGGAAACAGTATGATAAAGGAAAATGATTATTTCATGGTTCGGTCTTATGCAAACTCAAGGCATAGAACGCACCCACTCACAAGTCTCTACGTGTACGATATAGGATCACATCGTTTATATCAAATACAAAGTGAGTCGCATTCATAGTGTCCCCAGGATTAGGTACCCAGCCTTATCCTTATACTATAGACCGTTTTGGCTATTACTTAAACTTGATCCACTTTTATGTCTACACATAAAGTCTATGCATACATCCTATAGCCAAGGATTCTTAGTTTATTGGATTTAATAGATGCAATTTAACATAGGCAATTTTGGATCGACAATCCTTGTGCATTACCTATCCCGCCACGATAGGTAATTTTGAGTTGAAATTAGGCTTAATCCATTTACTCCCTACTTTTTCTAGATGTGCAGATGAGGACCCATATAAACACTTGAAGGAGTTCATCATCGTGTGCGAAGGGATGAGACCTCATGACATGACTGAAGAGCAAATTAACCTTCGAGCCTTCCCTTTGTCCTTAAAGGATGACGTCAACGATTGA

mRNA sequence

ATGCGAGGACAACAACTTGGTTTTGAAGCTGTGGAAAAACTTCTTCCTCCCACTAATGTGGAAAAACTTCACAGTATTAGTGACAACACCCATTTTTATAGCCTCGGATTGGATGCAGCCATTCGAGCTTATTGGATGCAGCGATTCGAGTTTATGTGCAACACCATGGGAGTTACGTTAGTTCAACGCAGAGACAAGCATTCATACAGACCACTCTGCAATCAAACATGTGATGCCAAGCCAAGGCTTATTACATGGATCCTTCTTCTCCAAGAGTTCGATGCGGAGATTATTGATAGGAAAGGAACCGAGATGAATGTGGCCGATCACCTCTCTAGACTTAAAAATGTTGAAATTGATAGGAAACAACCTAAAGTCAATGCCAGTTTTCCTGATGAAGTTGTACTGAAAGTCGAGGAATCTGTTCCTTGGTATGTTGATATCGTAAATTCTCTGGTCAGATTAGCCACAAGCCGACTCAAGGTCGAATTCTCTCAACACTTCCTTTATTTCTCATCTATTTATGCATCGAAACTCGAACCCATTAATCGTGATGTCGATTATGGGCTAAGATGTGCAGATGAGGACCCATATAAACACTTGAAGGAGTTCATCATCGTGTGCGAAGGGATGAGACCTCATGACATGACTGAAGAGCAAATTAACCTTCGAGCCTTCCCTTTGTCCTTAAAGGATGACGTCAACGATTGA

Coding sequence (CDS)

ATGCGAGGACAACAACTTGGTTTTGAAGCTGTGGAAAAACTTCTTCCTCCCACTAATGTGGAAAAACTTCACAGTATTAGTGACAACACCCATTTTTATAGCCTCGGATTGGATGCAGCCATTCGAGCTTATTGGATGCAGCGATTCGAGTTTATGTGCAACACCATGGGAGTTACGTTAGTTCAACGCAGAGACAAGCATTCATACAGACCACTCTGCAATCAAACATGTGATGCCAAGCCAAGGCTTATTACATGGATCCTTCTTCTCCAAGAGTTCGATGCGGAGATTATTGATAGGAAAGGAACCGAGATGAATGTGGCCGATCACCTCTCTAGACTTAAAAATGTTGAAATTGATAGGAAACAACCTAAAGTCAATGCCAGTTTTCCTGATGAAGTTGTACTGAAAGTCGAGGAATCTGTTCCTTGGTATGTTGATATCGTAAATTCTCTGGTCAGATTAGCCACAAGCCGACTCAAGGTCGAATTCTCTCAACACTTCCTTTATTTCTCATCTATTTATGCATCGAAACTCGAACCCATTAATCGTGATGTCGATTATGGGCTAAGATGTGCAGATGAGGACCCATATAAACACTTGAAGGAGTTCATCATCGTGTGCGAAGGGATGAGACCTCATGACATGACTGAAGAGCAAATTAACCTTCGAGCCTTCCCTTTGTCCTTAAAGGATGACGTCAACGATTGA

Protein sequence

MRGQQLGFEAVEKLLPPTNVEKLHSISDNTHFYSLGLDAAIRAYWMQRFEFMCNTMGVTLVQRRDKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVEIDRKQPKVNASFPDEVVLKVEESVPWYVDIVNSLVRLATSRLKVEFSQHFLYFSSIYASKLEPINRDVDYGLRCADEDPYKHLKEFIIVCEGMRPHDMTEEQINLRAFPLSLKDDVND

Homology

[Close]

BLAST of ClCG10G006825 vs. NCBI nr
Match: XP_038889255.1 (uncharacterized protein LOC120079151 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-21
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 45  WMQRFEFMCNTMGVTLVQRRDKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKGTE 104
           W++ FE M   + + +     K+S         D KPRLI W+LLLQEFD EIIDRK  E
Sbjct: 156 WIKPFELMLMPVIIHIDHSAIKYSMTKK-----DTKPRLIRWVLLLQEFDTEIIDRKEPE 215

Query: 105 MNVADHLSRLKNVEIDRKQPKVNASFPDEVVLKVEESVPWYVDIVNSLV 154
             VADHLSRL+N E D  QP VNASFPDE++LK++E +PWY DI N LV
Sbjct: 216 NKVADHLSRLENHENDPMQPSVNASFPDEMLLKIDEYLPWYADIFNFLV 259

[Close]

BLAST of ClCG10G006825 vs. NCBI nr
Match: KAE8694437.1 (hypothetical protein F3Y22_tig00110783pilonHSYRG00231 [Hibiscus syriacus])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-17
Identity = 68/171 (39.77%), Postives = 88/171 (51.46%), Query Frame = 0


Query: 2    RGQQLGFEAVEKLLPPTNV-EKLHSISDNTHFYSLGLDAAIRAY-------WMQRFEFMC 61
            +G ++    +EKL PP +V E    +     ++    +A I +        W   FE MC
Sbjct: 986  KGIEVDKAKIEKLPPPNSVKESTIRVRSEMPWHIQRAEANIISAPILVPLDWTAPFELMC 1045

Query: 62   N----TMGVTLVQRR-------DKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKG 121
            +    T+GV L QRR         HS         DAKPRLI WILLLQEF+ E+IDRKG
Sbjct: 1046 DASDFTVGVVLGQRRGTKVIVHTNHSAIKYLVNKKDAKPRLIRWILLLQEFELEVIDRKG 1105

Query: 122  TEMNVADHLSRLKNVEIDRKQPKVNASFPDEVVLKVEESVPWYVDIVNSLV 154
            TE  VA HLSRL+N+        +   FPDE +L   E +PWY D+V  LV
Sbjct: 1106 TENQVAGHLSRLENISECHDIFDIKEEFPDEKILYAME-IPWYADLVIFLV 1155

[Close]

BLAST of ClCG10G006825 vs. NCBI nr
Match: XP_038895812.1 (uncharacterized protein LOC120083978 [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 5.9e-17
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 78  DAKPRLITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVEIDRKQPKVNASFPDEVVLK 137
           DAKPRLI W+L LQEF+ EI DRKGTE  V DHLSRL+N E+  ++  +   FPDE+++ 
Sbjct: 40  DAKPRLIRWVLFLQEFNLEIKDRKGTENLVVDHLSRLENCEVQGREKDIEERFPDELLMS 99

Query: 138 VEESVPWYVDIVNSLV 154
           V+ +VPWYVDIVN +V
Sbjct: 100 VDINVPWYVDIVNFIV 115

[Close]

BLAST of ClCG10G006825 vs. NCBI nr
Match: KYP71359.1 (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-17
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 0


Query: 9   EAVEKLLPPTNVEKLHS-------ISDNTHFYSLGLDAAIRAYWMQRFEFMCNTMGVTLV 68
           E +EKL PP NV+ + S       + ++T       +  + A      +F    +G  ++
Sbjct: 504 EVIEKLPPPVNVKGIRSFLGHAGKVLNDTQANYATTEKELLAIVYALEKFRAYLIGSKII 563

Query: 69  QRRDKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVEIDR 128
              D  + + L  +  D+KPRLI WILLL EFD EI D+KG E NVADHLSRL N E+  
Sbjct: 564 VFTDHPAIKYLLTK-YDSKPRLIRWILLLLEFDLEIKDKKGCENNVADHLSRLVNNEVTT 623

Query: 129 KQPKVNASFPDEVVLKVEESVPWYVDIVN 151
            +P+++  FPDE +L ++E  PW+ D+ N
Sbjct: 624 LEPELSEEFPDEKLLSIQER-PWFADMAN 650

[Close]

BLAST of ClCG10G006825 vs. NCBI nr
Match: XP_025985221.1 (uncharacterized mitochondrial protein AtMg00860-like [Glycine max])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-16
Identity = 62/152 (40.79%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 9   EAVEKLLPPTNVEKLHSISDNTHFY----------SLGLDAAIRAYWMQRFEFMCNTMGV 68
           + +EKL PP NV+ + S   +  FY          +  L   +    + RF+  C T   
Sbjct: 25  DVIEKLPPPINVKGVRSFLGHVGFYRRFIKDFLMIAKQLSNLLNKDVVFRFDEECLTAFD 84

Query: 69  TLVQRRDKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVE 128
           TL  R       P      D+KPRLI WILLLQEFD  I D+KG+E  VADHLSRL N E
Sbjct: 85  TLKARLVS---APYLLTKADSKPRLIRWILLLQEFDLVIKDKKGSENLVADHLSRLVNEE 144

Query: 129 IDRKQPKVNASFPDEVVLKVEESVPWYVDIVN 151
           +  K+ +V   FPDE++L V E  PW+ D+ N
Sbjct: 145 VTHKELEVRDEFPDELLLVVNER-PWFADLAN 172

[Close]

BLAST of ClCG10G006825 vs. ExPASy TrEMBL
Match: A0A6A2ZSK6 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110783pilonHSYRG00231 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.8e-18
Identity = 68/171 (39.77%), Postives = 88/171 (51.46%), Query Frame = 0


Query: 2    RGQQLGFEAVEKLLPPTNV-EKLHSISDNTHFYSLGLDAAIRAY-------WMQRFEFMC 61
            +G ++    +EKL PP +V E    +     ++    +A I +        W   FE MC
Sbjct: 986  KGIEVDKAKIEKLPPPNSVKESTIRVRSEMPWHIQRAEANIISAPILVPLDWTAPFELMC 1045

Query: 62   N----TMGVTLVQRR-------DKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKG 121
            +    T+GV L QRR         HS         DAKPRLI WILLLQEF+ E+IDRKG
Sbjct: 1046 DASDFTVGVVLGQRRGTKVIVHTNHSAIKYLVNKKDAKPRLIRWILLLQEFELEVIDRKG 1105

Query: 122  TEMNVADHLSRLKNVEIDRKQPKVNASFPDEVVLKVEESVPWYVDIVNSLV 154
            TE  VA HLSRL+N+        +   FPDE +L   E +PWY D+V  LV
Sbjct: 1106 TENQVAGHLSRLENISECHDIFDIKEEFPDEKILYAME-IPWYADLVIFLV 1155

[Close]

BLAST of ClCG10G006825 vs. ExPASy TrEMBL
Match: A0A151TWA1 (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_010618 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-17
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 0


Query: 9   EAVEKLLPPTNVEKLHS-------ISDNTHFYSLGLDAAIRAYWMQRFEFMCNTMGVTLV 68
           E +EKL PP NV+ + S       + ++T       +  + A      +F    +G  ++
Sbjct: 504 EVIEKLPPPVNVKGIRSFLGHAGKVLNDTQANYATTEKELLAIVYALEKFRAYLIGSKII 563

Query: 69  QRRDKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVEIDR 128
              D  + + L  +  D+KPRLI WILLL EFD EI D+KG E NVADHLSRL N E+  
Sbjct: 564 VFTDHPAIKYLLTK-YDSKPRLIRWILLLLEFDLEIKDKKGCENNVADHLSRLVNNEVTT 623

Query: 129 KQPKVNASFPDEVVLKVEESVPWYVDIVN 151
            +P+++  FPDE +L ++E  PW+ D+ N
Sbjct: 624 LEPELSEEFPDEKLLSIQER-PWFADMAN 650

[Close]

BLAST of ClCG10G006825 vs. ExPASy TrEMBL
Match: A0A1U7XQC9 (uncharacterized protein LOC104238991 OS=Nicotiana sylvestris OX=4096 GN=LOC104238991 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.4e-16
Identity = 58/134 (43.28%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 45  WMQRFEFMCN----TMGVTLVQRRDKHSYRPLCNQTC------------------DAKPR 104
           W Q FEFMC+    T+GV L QR+DK  +RP+                       DA+PR
Sbjct: 342 WSQPFEFMCDATDTTVGVVLGQRKDK-IFRPIYYARTKVTIFTDHAALKYLLAKKDARPR 401

Query: 105 LITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVEIDRKQPKVNASFPDEVVLKVEESV 154
           L+ WILLLQEFD EI D+KG E  VADHLSRL++  ++  +  +   FPDE +  V+  V
Sbjct: 402 LLRWILLLQEFDLEIKDKKGIENQVADHLSRLEDPPLEFNE--IKEEFPDEHIFSVDSVV 461

[Close]

BLAST of ClCG10G006825 vs. ExPASy TrEMBL
Match: A0A1S4AA73 (uncharacterized protein LOC107795375 OS=Nicotiana tabacum OX=4097 GN=LOC107795375 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.0e-16
Identity = 58/134 (43.28%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 45  WMQRFEFMCN----TMGVTLVQRRDKHSYRPLCNQTC------------------DAKPR 104
           W Q FE MC+    T+GV L QR+DK  +RP+                       DA+PR
Sbjct: 342 WSQPFEVMCDATDTTVGVVLGQRKDK-IFRPIYYARTKVTIFTDHAALKYLLAKKDARPR 401

Query: 105 LITWILLLQEFDAEIIDRKGTEMNVADHLSRLKNVEIDRKQPKVNASFPDEVVLKVEESV 154
           L+ WILLLQEFD EI D+KGTE  VADHLSRL++  ++  +  +   FPDE +  V+  V
Sbjct: 402 LLRWILLLQEFDLEIKDKKGTENQVADHLSRLEDPPLEFNE--IKEEFPDEHIFSVDSVV 461

[Close]

BLAST of ClCG10G006825 vs. ExPASy TrEMBL
Match: A0A6A3BRM8 (Reverse transcriptase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109972pilonHSYRG00035 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 56   MGVTLVQRRDKHSYRPLCNQTCDAKPRLITWILLLQEFDAEIIDRKGTEMNVADHLSRLK 115
            +G  ++   D    + L N+  DAKPRLI WILLLQEFD E++DRKGTE  VADHLSRL+
Sbjct: 1328 IGTKVIVHTDHSVIKYLVNKK-DAKPRLIRWILLLQEFDLEVVDRKGTENQVADHLSRLE 1387

Query: 116  NVEIDRKQPKVNASFPDEVVLKVEESVPWYVDIVNSLV 154
            N         +   FPDE +L    ++PWY D+VN LV
Sbjct: 1388 NNSECHDTVDIQEEFPDEKIL-YAAAIPWYADLVNFLV 1423

The following BLAST results are available for this feature:

BLAST of ClCG10G006825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889255.1	3.0e-21	54.13	uncharacterized protein LOC120079151 [Benincasa hispida]	[more]
KAE8694437.1	2.0e-17	39.77	hypothetical protein F3Y22_tig00110783pilonHSYRG00231 [Hibiscus syriacus]	[more]
XP_038895812.1	5.9e-17	59.21	uncharacterized protein LOC120083978 [Benincasa hispida]	[more]
KYP71359.1	7.7e-17	38.26	Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]	[more]
XP_025985221.1	1.0e-16	40.79	uncharacterized mitochondrial protein AtMg00860-like [Glycine max]	[more]

BLAST of ClCG10G006825 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G006825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2ZSK6	9.8e-18	39.77	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A151TWA1	3.7e-17	38.26	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_010618 PE=4...	[more]
A0A1U7XQC9	5.4e-16	43.28	uncharacterized protein LOC104238991 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]
A0A1S4AA73	7.0e-16	43.28	uncharacterized protein LOC107795375 OS=Nicotiana tabacum OX=4097 GN=LOC10779537...	[more]
A0A6A3BRM8	1.2e-15	50.00	Reverse transcriptase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109972pilonHS...	[more]

BLAST of ClCG10G006825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 49..157
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 49..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006825.1	ClCG10G006825.1	mRNA