ClCG10G006380 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G006380
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Vacuolar protein sorting-associated protein 51 homolog
Location	CG_Chr10: 8869828 .. 8870900 (-)
RNA-Seq Expression	ClCG10G006380
Synteny	ClCG10G006380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGATGATGTTCCAATGGATGAAAAAGCTAAAAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGACGCTTCAATGTCTGGCTCATCCACGGGTTCATCTAATAGATATGCTTCTCCTTTAGAAGCCATAAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTTTGGTACGTCTTAAGCCCTGTCTCTCTCTCCCTTTTTCTTTTTCTGTATATTTTCTTAATTATTTTTTGATCTATTATGTTCAGTATATCGGATATATGCATTTTTTTTACACTTTTTTCTTTTTTTTTTGGGGGGGGGGGGGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAACTGAACTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGTGTGTGTCAGGAAAAGGAGTTTCTTATGGTCTCCTATTAAAGTACTTTTTATTAATAGCAAGAGTAATTTCCCTTCATAAGGTGAAAAAGTACAAAATTCATCCATTTCATTAGATCGATTCGGGATGTGATATGGTTCTGAAGGACAAACTGGATATGAAGAGAAACTGCTGCATTAAAATGTACAGTAGGTTGCATATTGCCCCTGGAGGTTTCCTCTCTTTTGAATATTTCATTACATTGATGAAATATTGA

mRNA sequence

ATGGAGATCGATGATGTTCCAATGGATGAAAAAGCTAAAAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGACGCTTCAATGTCTGGCTCATCCACGGGTTCATCTAATAGATATGCTTCTCCTTTAGAAGCCATAAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTTTGATCGATTCGGGATGTGATATGGTTCTGAAGGACAAACTGGATATGAAGAGAAACTGCTGCATTAAAATGTACAGTAGGTTGCATATTGCCCCTGGAGGTTTCCTCTCTTTTGAATATTTCATTACATTGATGAAATATTGA

Coding sequence (CDS)

ATGGAGATCGATGATGTTCCAATGGATGAAAAAGCTAAAAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGACGCTTCAATGTCTGGCTCATCCACGGGTTCATCTAATAGATATGCTTCTCCTTTAGAAGCCATAAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTTTGATCGATTCGGGATGTGATATGGTTCTGAAGGACAAACTGGATATGAAGAGAAACTGCTGCATTAAAATGTACAGTAGGTTGCATATTGCCCCTGGAGGTTTCCTCTCTTTTGAATATTTCATTACATTGATGAAATATTGA

Protein sequence

MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSILIDSGCDMVLKDKLDMKRNCCIKMYSRLHIAPGGFLSFEYFITLMKY

Homology

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: KAG6606940.1 (Vacuolar protein sorting-associated protein 51-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLE INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LI 63
          L+
Sbjct: 61 LV 62

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: XP_022949182.1 (vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_022949183.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_022949185.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_022949186.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLE INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LI 63
          L+
Sbjct: 61 LV 62

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: XP_022155269.1 (vacuolar protein sorting-associated protein 51 homolog [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPL+AINTTSFNPDQYMSI
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: KAG7036643.1 (Vacuolar protein sorting-associated protein 51-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLE INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LI 63
          L+
Sbjct: 61 LV 62

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: XP_022998158.1 (vacuolar protein sorting-associated protein 51 homolog [Cucurbita maxima] >XP_022998159.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita maxima] >XP_022998160.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita maxima] >XP_022998161.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita maxima])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLE INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LI 63
          L+
Sbjct: 61 LV 62

[Close]

BLAST of ClCG10G006380 vs. ExPASy Swiss-Prot
Match: Q0WQ75 (Vacuolar protein sorting-associated protein 51 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS51 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-09
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASM--SGSSTGSSNRYASPLEAINTTSFNPDQYM 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+  SGSS  +S       + IN+TSF+ DQYM
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTSGSSINAS------FDNINSTSFDADQYM 60

Query: 61 SILI-DSGCDMVLKDKLDM 77
           ++I  S  +++L+  + M
Sbjct: 61 DLMIKKSNLEVLLQRHVQM 73

[Close]

BLAST of ClCG10G006380 vs. ExPASy TrEMBL
Match: A0A6J1K9H7 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492889 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLE INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LI 63
          L+
Sbjct: 61 LV 62

[Close]

BLAST of ClCG10G006380 vs. ExPASy TrEMBL
Match: A0A6J1GBC0 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452610 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLE INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LI 63
          L+
Sbjct: 61 LV 62

[Close]

BLAST of ClCG10G006380 vs. ExPASy TrEMBL
Match: A0A6J1DPR9 (Vacuolar protein sorting-associated protein 51 homolog OS=Momordica charantia OX=3673 GN=LOC111022412 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPL+AINTTSFNPDQYMSI
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. ExPASy TrEMBL
Match: A0A0A0K869 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G324110 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. ExPASy TrEMBL
Match: A0A1S3CES5 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis melo OX=3656 GN=LOC103500085 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMS S TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSSSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. TAIR 10
Match: AT4G02030.1 (Vps51/Vps67 family (components of vesicular transport) protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASM--SGSSTGSSNRYASPLEAINTTSFNPDQYM 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+  SGSS  +S       + IN+TSF+ DQYM
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTSGSSINAS------FDNINSTSFDADQYM 60

Query: 61 SILI-DSGCDMVLKDKLDM 77
           ++I  S  +++L+  + M
Sbjct: 61 DLMIKKSNLEVLLQRHVQM 73

[Close]

BLAST of ClCG10G006380 vs. TAIR 10
Match: AT4G02030.2 (Vps51/Vps67 family (components of vesicular transport) protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASM--SGSSTGSSNRYASPLEAINTTSFNPDQYM 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+  SGSS  +S       + IN+TSF+ DQYM
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTSGSSINAS------FDNINSTSFDADQYM 58

Query: 61 SILI 63
           ++I
Sbjct: 61 DLMI 58

The following BLAST results are available for this feature:

BLAST of ClCG10G006380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606940.1	7.2e-23	95.16	Vacuolar protein sorting-associated protein 51-like protein, partial [Cucurbita ...	[more]
XP_022949182.1	7.2e-23	95.16	vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_...	[more]
XP_022155269.1	7.2e-23	80.52	vacuolar protein sorting-associated protein 51 homolog [Momordica charantia]	[more]
KAG7036643.1	7.2e-23	95.16	Vacuolar protein sorting-associated protein 51-like protein, partial [Cucurbita ...	[more]
XP_022998158.1	7.2e-23	95.16	vacuolar protein sorting-associated protein 51 homolog [Cucurbita maxima] >XP_02...	[more]

BLAST of ClCG10G006380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WQ75	4.7e-09	49.37	Vacuolar protein sorting-associated protein 51 homolog OS=Arabidopsis thaliana O...	[more]

BLAST of ClCG10G006380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9H7	3.5e-23	95.16	Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita maxima OX=36...	[more]
A0A6J1GBC0	3.5e-23	95.16	Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita moschata OX=...	[more]
A0A6J1DPR9	3.5e-23	80.52	Vacuolar protein sorting-associated protein 51 homolog OS=Momordica charantia OX...	[more]
A0A0A0K869	1.0e-22	79.22	Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis sativus OX=365...	[more]
A0A1S3CES5	1.7e-22	79.22	Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis melo OX=3656 G...	[more]

BLAST of ClCG10G006380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02030.1	3.4e-10	49.37	Vps51/Vps67 family (components of vesicular transport) protein	[more]
AT4G02030.2	4.4e-10	56.25	Vps51/Vps67 family (components of vesicular transport) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15954:SF5	LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG	coord: 1..80
IPR014812	Vacuolar protein sorting-associated protein 51	PANTHER	PTHR15954	UNCHARACTERIZED	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006380.1	ClCG10G006380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006869	lipid transport
biological_process	GO:0015031	protein transport
biological_process	GO:0042147	retrograde transport, endosome to Golgi
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000938	GARP complex