ClCG10G006270 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G006270
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Flocculation protein FLO11-like
Location	CG_Chr10: 8687080 .. 8688042 (-)
RNA-Seq Expression	ClCG10G006270
Synteny	ClCG10G006270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATTTCATTGCTTGCCTAGAAAACCCTAAAGATATTGTTGGTTCATCTATCTTTCAAGAAGAAATTAGGGTTCCTGAAGGTGAAATGGGTGGTAATGATAATCCAGTCCTTGAGTCTGATAATGTTGAGTCTGTTTTACCTAAATCCTCTATGATTGCGGAAGGAAAAAGTGGCCTTGAATTTGCTGAAATAGAAATTGAAAATGTCCCTGTGCTTGATGAAATTACTTCTAATGACCTAGTTGGTCAAGTTGTTGCTCTGTATCTGCTTTACCTCTAACTGGTACTTTCGAAAAGCTTGCTGAGATTGTTGAAGGAAATGTCTCTTGAATTTTTCCAACCTGTTGAGGAGGGTGTTAATACTTCTCTTGAATTTATTGTCATGTGTACACAAAGGAGTTGTGACTGATGACGTGGCTGGGGACAAAATGACTACTGTGAACGATGAGAACTTGAATAGTATAGTCTTGCCTGATATGGATCTTGAAACTAATGAACATATTTCTAAAGAAACCCCTCCCTCTATTAATGTTGTTGAAGAAGATAGTACGACTTTTGCTAAGCCTCAATTCAAGTGACATGGGAAGGCTGAGGTAGATGTTGATGCTTCTTCCTGAGACATCCAATTTTGAAAAGTCTCCCTTTGATGAGGATTTCAACAGGGGGTTTCCAAAGTAGCTCAGATAATGAAGACACTGAAAATGTGCGGGTCACTTGTGCTACAACAAAAGGGAAAGGAAAGCAGACTACTAATGGTAATGTTTCCACTATACCATTGGATGAGGTGTCCTTTCATATAGAAAAGGGTGCTGGTGTGTGGAAGTATGTGGTGAAGAGAAATATTGTAGATGAAAAAGAGCTATCGGAAAGTACCAAGGAATGTCTTGATCTTAGGGATTTGCTTCCTGAAGCCAGGTTAGAGAAGATTGTGTTGCATTTGGGGTCTTTTTATCCCTAA

mRNA sequence

ATGCATGATTTCATTGCTTGCCTAGAAAACCCTAAAGATATTGTTGGTTCATCTATCTTTCAAGAAGAAATTAGGGTTCCTGAAGGTGAAATGGGTGGTAATGATAATCCAGTCCTTGAGTCTGATAATGTTGAGTCTGTTTTACCTAAATCCTCTATGATTGCGGAAGGAAAAAGTGGCCTTGAATTTGCTGAAATAGAAATTGAAAATGTCCCTGTGCTTGATGAAATTACTTCTAATGACCTAGTTGGTCAAGTTGTTGCTCTGAGGGTGTTAATACTTCTCTTGAATTTATTGTCATGTGTACACAAAGGAGTTGTGACTGATGACGTGGCTGGGGACAAAATGACTACTGTGAACGATGAGAACTTGAATAGTATAGTCTTGCCTGATATGGATCTTGAAACTAATGAACATATTTCTAAAGAAACCCCTCCCTCTATTAATGTTGTTGAAGAAGATAGGGGTTTCCAAAGTAGCTCAGATAATGAAGACACTGAAAATGTGCGGGTCACTTGTGCTACAACAAAAGGGAAAGGAAAGCAGACTACTAATGGTAATGTTTCCACTATACCATTGGATGAGGTGTCCTTTCATATAGAAAAGGGTGCTGGTGTGTGGAAGTATGTGGTGAAGAGAAATATTGTAGATGAAAAAGAGCTATCGGAAAGTACCAAGGAATGTCTTGATCTTAGGGATTTGCTTCCTGAAGCCAGGTTAGAGAAGATTGTGTTGCATTTGGGGTCTTTTTATCCCTAA

Coding sequence (CDS)

ATGCATGATTTCATTGCTTGCCTAGAAAACCCTAAAGATATTGTTGGTTCATCTATCTTTCAAGAAGAAATTAGGGTTCCTGAAGGTGAAATGGGTGGTAATGATAATCCAGTCCTTGAGTCTGATAATGTTGAGTCTGTTTTACCTAAATCCTCTATGATTGCGGAAGGAAAAAGTGGCCTTGAATTTGCTGAAATAGAAATTGAAAATGTCCCTGTGCTTGATGAAATTACTTCTAATGACCTAGTTGGTCAAGTTGTTGCTCTGAGGGTGTTAATACTTCTCTTGAATTTATTGTCATGTGTACACAAAGGAGTTGTGACTGATGACGTGGCTGGGGACAAAATGACTACTGTGAACGATGAGAACTTGAATAGTATAGTCTTGCCTGATATGGATCTTGAAACTAATGAACATATTTCTAAAGAAACCCCTCCCTCTATTAATGTTGTTGAAGAAGATAGGGGTTTCCAAAGTAGCTCAGATAATGAAGACACTGAAAATGTGCGGGTCACTTGTGCTACAACAAAAGGGAAAGGAAAGCAGACTACTAATGGTAATGTTTCCACTATACCATTGGATGAGGTGTCCTTTCATATAGAAAAGGGTGCTGGTGTGTGGAAGTATGTGGTGAAGAGAAATATTGTAGATGAAAAAGAGCTATCGGAAAGTACCAAGGAATGTCTTGATCTTAGGGATTTGCTTCCTGAAGCCAGGTTAGAGAAGATTGTGTTGCATTTGGGGTCTTTTTATCCCTAA

Protein sequence

MHDFIACLENPKDIVGSSIFQEEIRVPEGEMGGNDNPVLESDNVESVLPKSSMIAEGKSGLEFAEIEIENVPVLDEITSNDLVGQVVALRVLILLLNLLSCVHKGVVTDDVAGDKMTTVNDENLNSIVLPDMDLETNEHISKETPPSINVVEEDRGFQSSSDNEDTENVRVTCATTKGKGKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDLLPEARLEKIVLHLGSFYP

Homology

[Close]

BLAST of ClCG10G006270 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-12
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 187 NVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDLLPEARLEKIVLH 246
           NV  +PLD VSFH E+ A +WKYVVKRNIV EKELS+ T++C+   +L+  A LE+ VL+
Sbjct: 3   NVPFVPLDGVSFHTEESASLWKYVVKRNIVHEKELSDCTQKCVKSMELIQTASLERTVLN 62

Query: 247 LGSFYP 253
           LG +YP
Sbjct: 63  LGPYYP 68

[Close]

BLAST of ClCG10G006270 vs. NCBI nr
Match: KAA0049619.1 (uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa] >TYK15979.1 uncharacterized protein E5676_scaffold94G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-09
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 156 GFQSSSDNEDTENVRVTCATTKGKGKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNI 215
           GF   SD E  +  RVT A+TKGKGK+ +   V ++ LD VSFH ++ A +WK++VK+NI
Sbjct: 64  GFHGDSDVEAIKKARVTRASTKGKGKRPSGSTVPSVSLDGVSFHTKECASLWKFIVKKNI 123

Query: 216 VDEKELSESTK 227
           V+EKELS  T+
Sbjct: 124 VNEKELSVCTQ 134

[Close]

BLAST of ClCG10G006270 vs. NCBI nr
Match: TYK27163.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 0


Query: 121 DENLNSIVLPDMDLETNEHISKETPPSINVVEEDRGFQSSSD--------NEDTENVRVT 180
           D+  NS  +    + T+E+ + E   SI V E ++G ++S D         ED    +  
Sbjct: 114 DQGSNSSHVKPESVPTSENPTSE--HSIEVQEPNKGNEASRDILDPVSDVGEDRPQKKSR 173

Query: 181 CATTKGKGKQTTNG------NVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTK 240
            A+T+ K   T  G      N+ +IP+D +SFH+E+    WKYVV+R   DE  +S+   
Sbjct: 174 KASTRPKVITTKTGHRKVPPNIPSIPIDGISFHLEESVHRWKYVVQRRFADEVNISDKHH 233

Query: 241 ECLDLRDLLPEARLEKIVLHLGSFYP 253
            CL + DL  +A L K + ++G FYP
Sbjct: 234 SCLSVMDLEIQAGLSKTIFNVGQFYP 257

[Close]

BLAST of ClCG10G006270 vs. NCBI nr
Match: KAA0058506.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-08
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 180 GKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDLLPEAR 239
           G++    NVS++P+DEVSFH E+GA  WKYVVKR I DE  +++    C  + +L+  A 
Sbjct: 848 GRRKVPPNVSSVPIDEVSFHSEEGAHKWKYVVKRRIADEANIADRYNSCPAVLELICNAE 907

Query: 240 LEKIVLHLGSFYP 253
           L + V  +G FYP
Sbjct: 908 LIRTVSEVGLFYP 920

[Close]

BLAST of ClCG10G006270 vs. NCBI nr
Match: TYK07239.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-08
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 180 GKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDLLPEAR 239
           G++    NVS++P+DEVSFH E+GA  WKYVVKR I DE  +++    C  + +L+  A 
Sbjct: 848 GRRKVPPNVSSVPIDEVSFHSEEGAHKWKYVVKRRIADEANIADRYNSCPAVLELICNAE 907

Query: 240 LEKIVLHLGSFYP 253
           L + V  +G FYP
Sbjct: 908 LIRTVSEVGLFYP 920

[Close]

BLAST of ClCG10G006270 vs. ExPASy TrEMBL
Match: A0A5D3D0J7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001040 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 156 GFQSSSDNEDTENVRVTCATTKGKGKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNI 215
           GF   SD E  +  RVT A+TKGKGK+ +   V ++ LD VSFH ++ A +WK++VK+NI
Sbjct: 64  GFHGDSDVEAIKKARVTRASTKGKGKRPSGSTVPSVSLDGVSFHTKECASLWKFIVKKNI 123

Query: 216 VDEKELSESTK 227
           V+EKELS  T+
Sbjct: 124 VNEKELSVCTQ 134

[Close]

BLAST of ClCG10G006270 vs. ExPASy TrEMBL
Match: A0A5D3DU39 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00080 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-09
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 0


Query: 121 DENLNSIVLPDMDLETNEHISKETPPSINVVEEDRGFQSSSD--------NEDTENVRVT 180
           D+  NS  +    + T+E+ + E   SI V E ++G ++S D         ED    +  
Sbjct: 114 DQGSNSSHVKPESVPTSENPTSE--HSIEVQEPNKGNEASRDILDPVSDVGEDRPQKKSR 173

Query: 181 CATTKGKGKQTTNG------NVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTK 240
            A+T+ K   T  G      N+ +IP+D +SFH+E+    WKYVV+R   DE  +S+   
Sbjct: 174 KASTRPKVITTKTGHRKVPPNIPSIPIDGISFHLEESVHRWKYVVQRRFADEVNISDKHH 233

Query: 241 ECLDLRDLLPEARLEKIVLHLGSFYP 253
            CL + DL  +A L K + ++G FYP
Sbjct: 234 SCLSVMDLEIQAGLSKTIFNVGQFYP 257

[Close]

BLAST of ClCG10G006270 vs. ExPASy TrEMBL
Match: A0A5D3CAA3 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001350 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-09
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 180 GKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDLLPEAR 239
           G++    NVS++P+DEVSFH E+GA  WKYVVKR I DE  +++    C  + +L+  A 
Sbjct: 848 GRRKVPPNVSSVPIDEVSFHSEEGAHKWKYVVKRRIADEANIADRYNSCPAVLELICNAE 907

Query: 240 LEKIVLHLGSFYP 253
           L + V  +G FYP
Sbjct: 908 LIRTVSEVGLFYP 920

[Close]

BLAST of ClCG10G006270 vs. ExPASy TrEMBL
Match: A0A5A7UWF9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00990 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-09
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 180 GKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDLLPEAR 239
           G++    NVS++P+DEVSFH E+GA  WKYVVKR I DE  +++    C  + +L+  A 
Sbjct: 848 GRRKVPPNVSSVPIDEVSFHSEEGAHKWKYVVKRRIADEANIADRYNSCPAVLELICNAE 907

Query: 240 LEKIVLHLGSFYP 253
           L + V  +G FYP
Sbjct: 908 LIRTVSEVGLFYP 920

[Close]

BLAST of ClCG10G006270 vs. ExPASy TrEMBL
Match: A0A1S3C6D9 (uncharacterized protein LOC103496990 OS=Cucumis melo OX=3656 GN=LOC103496990 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 175 TTKGKGKQTTNGNVSTIPLDEVSFHIEKGAGVWKYVVKRNIVDEKELSESTKECLDLRDL 234
           TTK   K+  + NV ++P+D +SFH E+    WK+V++R IVDE  +S+  + C+ + DL
Sbjct: 178 TTKTDRKK-ISVNVPSVPIDGISFHHEESVQCWKFVMQRRIVDEVNISDKHQSCMSIMDL 237

Query: 235 LPEARLEKIVLHLGSFYP 253
           + +A LEK + ++G FYP
Sbjct: 238 IHKAGLEKTISNVGPFYP 254

The following BLAST results are available for this feature:

BLAST of ClCG10G006270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904458.1	3.6e-12	57.58	uncharacterized protein LOC120090822 [Benincasa hispida]	[more]
KAA0049619.1	3.7e-09	50.70	uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK27163.1	1.1e-08	32.88	cell wall protein RBR3-like [Cucumis melo var. makuwa]	[more]
KAA0058506.1	1.8e-08	45.21	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
TYK07239.1	1.8e-08	45.21	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of ClCG10G006270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G006270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0J7	1.8e-09	50.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DU39	5.2e-09	32.88	Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CAA3	8.8e-09	45.21	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UWF9	8.8e-09	45.21	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3C6D9	2.6e-08	41.03	uncharacterized protein LOC103496990 OS=Cucumis melo OX=3656 GN=LOC103496990 PE=...	[more]

BLAST of ClCG10G006270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006270.1	ClCG10G006270.1	mRNA