ClCG10G006030 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G006030
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionFlocculation protein FLO11-like
LocationCG_Chr10: 8079076 .. 8081178 (+)
RNA-Seq ExpressionClCG10G006030
SyntenyClCG10G006030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGTTTAAGGGCAAAGAAGGAAGTTAAAAATTGTCCCCTCATTGCTCCTTTTAGTATAGTGTTGGAGAGTTGTGTTGTTGGCTCTCATATTGTGTTTAAGGTGGTTGCTTGAGTTTCGCTGATTGTCTCTTATTGTATCTTAACATCTGCTTATATCGTTGGATTTTTTTGCGAATATTTTATTTCTATATCAGGCGATTTTGTGTAGATTTATTCGATCCGATATTCTTTATCGGATCCACTGATTGCCTTTTCGGTCATGCCTTTGATTATTTCCTTACTAAGCTTATCAGTATAAAAGGTGATGATCATTATTTTCTAGAGTTCCCAACTTTTTGTATTGTGTGGAGATTGTTCTTGAGGGTGGCCAAATTCTTCACCGTGAAAAGTGTTTTGTGTTTTATCTTTTTGCTGTTGTGAACCTTTGAGAGAGCGAATTCAAAAGAACATGGCTGTCTTGAGGGAATCATAATGAGTTTTTCACATAAGCTATTCTTGGTCTCAAGGGGAGCCTAAGACCTCATACAGTGAGAAAGAAGTTCTCATTGCTTAGGAGAGCTAAGTGTACAAGTGAAGGGAGTTCATGGAGATTTGGGAGAGATAATCAATTGAAGAAGATTCGCACTAGCACTAACGGAAGCTGAATTGCATCTACACTAATATTGTCAAACATAGGGGGAGCATAAGCATATGAGAGGGAGTCTCACATCTAGGAGGAACCTAAGTGGTTATCTTATTAGCTTGGCTAGTGTCACTGTAGAAGTTGTTACTTTACAGATAAGTACCATGTTGTAATTGTTTAACATTTCAATATTAGTGGATTATCTTTCTCGGGCACACAACCCCCTAGACGTAGGTGTATATCACCAAACTAGATGATATACAGTCCAACACAATCGAACGAAGCACATTAACATAAAACATCATTTTTTTCGTGATTTAGTTGAAAGCAAACAAATTATTCTTGAACATATCAACACGAAAAATCAATTGGCTGACATTTTCACAAAACCCCTGAACACTGCTCAGTTTGAAGGGCTAAGAGCATCCCTAGGCTTATGTACTCTTGAAAAATAGCAATTAATTGAGTGGGCCTGGCAAAAGGAGAAATGACCCATTCGATTTTGAAGAACGCAGGAAGTGATCAGGCATTAACTGACTTAACTACGGTTAGTGAAGGATTAACTAGGTCAGTCTTTCTTTTAATTTCAAATTACTTTGCATTTCAATTTGGCTGGCAATTGATTTTTTGACAGGCTTTGTGTGCACATCGTGGGGTTTCAAAAGTTCCATATGCCTTGTCGTTTTCCCTTGATCGTTCTCTCCTTGCATGTGCCTGTGTGTCCTAAGTCTGTTCATTCTGAAACGATGGTTACTGAAAATATTTTATCGAAGAAATAGTCTAGATCAATCGAACGTGTGTTTGCTGAGTGTGCTAACAGAATTATCGCTGAAACTGTGGCCTCTATTGCTGGTATGTCTGAGGAATGTAATGTCAAAGATTCAATTTCTCCTAATGATCACATTGAGTATGTTGCTTCCACTCCTTCCACGACTCCTGAAAACACTGCTAAAAAAAGGAATGATCAAGTGTGTGTTGATCCTAAGCTTAGCGTTGAAGCCAATCCTCCTGCTGAAATCTCAAGAGTAGGGAATTCTGGTGATCTATCAAGTCCACCTGTAAGTCATGCTCGACTTGAGCAAAAAGTGTCTGAAAAAGAAACAAATGTCTCTCCGATGTCTCCTAGTGTTGAGTCTAAAAATTCTACAAAAATCACCTCTGATGAAGATGATGATTGGGGGGGTTTTCTCAGCAATTTTGAGGATGAAGCTCTTGTTAATATAAGAGTTACTAGAGGCTCGACTAAGGGAAAAGGAAAGGCAACTCCTGTAGGGAATGTTGCTTTAGTTCATTTAGATAGCGTGTCCTTCCATTCTGAAGAAGGGGCAAGTCTATGGAAATATGTGGTTAAACATAAGATAGTCGATGAAAAGGAGATCTCTGACAGTACTCAAGAATGCTTGGATCTTATAGATCTTCTCCTTGAAGCAGGGTTAGAAAAGACTCTATTATGCTTGGGTCTCTTTTATCCTTAG

mRNA sequence

ATGGAAAGATCAATCGAACGTGTGTTTGCTGAGTGTGCTAACAGAATTATCGCTGAAACTGTGGCCTCTATTGCTGGTATGTCTGAGGAATGTAATGTCAAAGATTCAATTTCTCCTAATGATCACATTGAGTATGTTGCTTCCACTCCTTCCACGACTCCTGAAAACACTGCTAAAAAAAGGAATGATCAAGTGTGTGTTGATCCTAAGCTTAGCGTTGAAGCCAATCCTCCTGCTGAAATCTCAAGAGTAGGGAATTCTGGTGATCTATCAAGTCCACCTGTAAGTCATGCTCGACTTGAGCAAAAAGTGTCTGAAAAAGAAACAAATGTCTCTCCGATGTCTCCTAGTGTTGAGTCTAAAAATTCTACAAAAATCACCTCTGATGAAGATGATGATTGGGGGGGTTTTCTCAGCAATTTTGAGGATGAAGCTCTTGTTAATATAAGAGTTACTAGAGGCTCGACTAAGGGAAAAGGAAAGGCAACTCCTGTAGGGAATGTTGCTTTAGTTCATTTAGATAGCGTGTCCTTCCATTCTGAAGAAGGGGCAAGTCTATGGAAATATGTGGTTAAACATAAGATAGTCGATGAAAAGGAGATCTCTGACAGTACTCAAGAATGCTTGGATCTTATAGATCTTCTCCTTGAAGCAGGGTTAGAAAAGACTCTATTATGCTTGGGTCTCTTTTATCCTTAG

Coding sequence (CDS)

ATGGAAAGATCAATCGAACGTGTGTTTGCTGAGTGTGCTAACAGAATTATCGCTGAAACTGTGGCCTCTATTGCTGGTATGTCTGAGGAATGTAATGTCAAAGATTCAATTTCTCCTAATGATCACATTGAGTATGTTGCTTCCACTCCTTCCACGACTCCTGAAAACACTGCTAAAAAAAGGAATGATCAAGTGTGTGTTGATCCTAAGCTTAGCGTTGAAGCCAATCCTCCTGCTGAAATCTCAAGAGTAGGGAATTCTGGTGATCTATCAAGTCCACCTGTAAGTCATGCTCGACTTGAGCAAAAAGTGTCTGAAAAAGAAACAAATGTCTCTCCGATGTCTCCTAGTGTTGAGTCTAAAAATTCTACAAAAATCACCTCTGATGAAGATGATGATTGGGGGGGTTTTCTCAGCAATTTTGAGGATGAAGCTCTTGTTAATATAAGAGTTACTAGAGGCTCGACTAAGGGAAAAGGAAAGGCAACTCCTGTAGGGAATGTTGCTTTAGTTCATTTAGATAGCGTGTCCTTCCATTCTGAAGAAGGGGCAAGTCTATGGAAATATGTGGTTAAACATAAGATAGTCGATGAAAAGGAGATCTCTGACAGTACTCAAGAATGCTTGGATCTTATAGATCTTCTCCTTGAAGCAGGGTTAGAAAAGACTCTATTATGCTTGGGTCTCTTTTATCCTTAG

Protein sequence

MERSIERVFAECANRIIAETVASIAGMSEECNVKDSISPNDHIEYVASTPSTTPENTAKKRNDQVCVDPKLSVEANPPAEISRVGNSGDLSSPPVSHARLEQKVSEKETNVSPMSPSVESKNSTKITSDEDDDWGGFLSNFEDEALVNIRVTRGSTKGKGKATPVGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDLLLEAGLEKTLLCLGLFYP
Homology
[Close]
BLAST of ClCG10G006030 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-12
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 165 VGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDLLLEAGLEKTL 224
           + NV  V LD VSFH+EE ASLWKYVVK  IV EKE+SD TQ+C+  ++L+  A LE+T+
Sbjct: 1   MSNVPFVPLDGVSFHTEESASLWKYVVKRNIVHEKELSDCTQKCVKSMELIQTASLERTV 60

Query: 225 LCLGLFYP 233
           L LG +YP
Sbjct: 61  LNLGPYYP 68

[Close]
BLAST of ClCG10G006030 vs. NCBI nr
Match: KAA0049619.1 (uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa] >TYK15979.1 uncharacterized protein E5676_scaffold94G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-11
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 125 KITSDEDDDWGGFLSNFEDEALVNIRVTRGSTKGKGKATPVGNVALVHLDSVSFHSEEGA 184
           ++ S  D +W GF  + + EA+   RVTR STKGKGK      V  V LD VSFH++E A
Sbjct: 54  QVFSGSDSNW-GFHGDSDVEAIKKARVTRASTKGKGKRPSGSTVPSVSLDGVSFHTKECA 113

Query: 185 SLWKYVVKHKIVDEKEISDSTQ 207
           SLWK++VK  IV+EKE+S  TQ
Sbjct: 114 SLWKFIVKKNIVNEKELSVCTQ 134

[Close]
BLAST of ClCG10G006030 vs. NCBI nr
Match: KAA0056211.1 (uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 155 STKGKGKATPVGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDL 214
           +TK   K  P  NV  V +D +SFH EE    WK+V++ +IVDE  ISD  Q C+ ++DL
Sbjct: 224 TTKTDRKKIP-ANVPSVPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDL 283

Query: 215 LLEAGLEKTLLCLGLFYP 233
           + +AGLEKT+  +G FYP
Sbjct: 284 IHKAGLEKTISDVGPFYP 300

[Close]
BLAST of ClCG10G006030 vs. NCBI nr
Match: XP_008465030.1 (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 155 STKGKGKATPVGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDL 214
           +TK   K  P  NV  V +D +SFH EE    WK+V++ +IVDE  ISD  Q C+ ++DL
Sbjct: 224 TTKTDRKKIP-ANVPSVPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDL 283

Query: 215 LLEAGLEKTLLCLGLFYP 233
           + +AGLEKT+  +G FYP
Sbjct: 284 IHKAGLEKTISDVGPFYP 300

[Close]
BLAST of ClCG10G006030 vs. NCBI nr
Match: XP_008457264.1 (PREDICTED: uncharacterized protein LOC103496990 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-09
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 167 NVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDLLLEAGLEKTLLC 226
           NV  V +D +SFH EE    WK+V++ +IVDE  ISD  Q C+ ++DL+ +AGLEKT+  
Sbjct: 189 NVPSVPIDGISFHHEESVQCWKFVMQRRIVDEVNISDKHQSCMSIMDLIHKAGLEKTISN 248

Query: 227 LGLFYP 233
           +G FYP
Sbjct: 249 VGPFYP 254

[Close]
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match: A0A5D3D0J7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001040 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-11
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 125 KITSDEDDDWGGFLSNFEDEALVNIRVTRGSTKGKGKATPVGNVALVHLDSVSFHSEEGA 184
           ++ S  D +W GF  + + EA+   RVTR STKGKGK      V  V LD VSFH++E A
Sbjct: 54  QVFSGSDSNW-GFHGDSDVEAIKKARVTRASTKGKGKRPSGSTVPSVSLDGVSFHTKECA 113

Query: 185 SLWKYVVKHKIVDEKEISDSTQ 207
           SLWK++VK  IV+EKE+S  TQ
Sbjct: 114 SLWKFIVKKNIVNEKELSVCTQ 134

[Close]
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match: A0A5A7URQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.4e-10
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 155 STKGKGKATPVGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDL 214
           +TK   K  P  NV  V +D +SFH EE    WK+V++ +IVDE  ISD  Q C+ ++DL
Sbjct: 224 TTKTDRKKIP-ANVPSVPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDL 283

Query: 215 LLEAGLEKTLLCLGLFYP 233
           + +AGLEKT+  +G FYP
Sbjct: 284 IHKAGLEKTISDVGPFYP 300

[Close]
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match: A0A1S3CMY0 (uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.4e-10
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 155 STKGKGKATPVGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDL 214
           +TK   K  P  NV  V +D +SFH EE    WK+V++ +IVDE  ISD  Q C+ ++DL
Sbjct: 224 TTKTDRKKIP-ANVPSVPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDL 283

Query: 215 LLEAGLEKTLLCLGLFYP 233
           + +AGLEKT+  +G FYP
Sbjct: 284 IHKAGLEKTISDVGPFYP 300

[Close]
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match: A0A1S3C6D9 (uncharacterized protein LOC103496990 OS=Cucumis melo OX=3656 GN=LOC103496990 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 167 NVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDLLLEAGLEKTLLC 226
           NV  V +D +SFH EE    WK+V++ +IVDE  ISD  Q C+ ++DL+ +AGLEKT+  
Sbjct: 189 NVPSVPIDGISFHHEESVQCWKFVMQRRIVDEVNISDKHQSCMSIMDLIHKAGLEKTISN 248

Query: 227 LGLFYP 233
           +G FYP
Sbjct: 249 VGPFYP 254

[Close]
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match: A0A5D3CSU3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00030 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 155 STKGKGKATPVGNVALVHLDSVSFHSEEGASLWKYVVKHKIVDEKEISDSTQECLDLIDL 214
           +TK   K  P  NV  V +D +SFH EE    WK+V++ +IVD+  ISD  Q C+ ++DL
Sbjct: 236 TTKTDRKKIP-ANVPSVPIDGISFHHEESVQYWKFVMQKRIVDKVNISDKHQSCMSIMDL 295

Query: 215 LLEAGLEKTLLCLGLFYP 233
           + +AGLEKT+  +G FYP
Sbjct: 296 IHKAGLEKTISDVGPFYP 312

The following BLAST results are available for this feature:
BLAST of ClCG10G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904458.14.3e-1258.82uncharacterized protein LOC120090822 [Benincasa hispida][more]
KAA0049619.16.2e-1151.22uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0056211.11.5e-0947.44uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa][more]
XP_008465030.11.5e-0947.44PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo][more]
XP_008457264.12.6e-0950.00PREDICTED: uncharacterized protein LOC103496990 [Cucumis melo][more]
BLAST of ClCG10G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D0J73.0e-1151.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URQ67.4e-1047.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CMY07.4e-1047.44uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=... [more]
A0A1S3C6D91.3e-0950.00uncharacterized protein LOC103496990 OS=Cucumis melo OX=3656 GN=LOC103496990 PE=... [more]
A0A5D3CSU32.1e-0946.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of ClCG10G006030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G006030.1ClCG10G006030.1mRNA