ClCG10G006000 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G006000
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	CG_Chr10: 7994874 .. 7995913 (-)
RNA-Seq Expression	ClCG10G006000
Synteny	ClCG10G006000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGACAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTTGACTTATCCTTACTTTGGATGATGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGTAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAGCCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATATGTTATGGCTTGGCCCTTTTATGGCGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGTAGCCACTGGTATGCGAATGATGCATATTTTTTTCGTATCAGGGGAGTCGCAGCTGATCTACCTCATGGATGGATAGATAAATGTTTGGATTTCTGCGATTATTTTTTGATAGCGGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTCATAAATTGGGGGTTATCAAGACCAATGTTGCGAGCTTCCAGAATGCCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAGTGGCAAAAATAAGGAGATTCATTAGCTCGTTATTTAGTCAGACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTCCTCTTTTGCCACAGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTAAGAGTTTTTTCCTTCGCTGA

mRNA sequence

ATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGACAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGTAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAGCCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATATGTTATGGCTTGGCCCTTTTATGGCGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGTAGCCACTGAACGAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTCATAAATTGGGGGTTATCAAGACCAATGTTGCGAGCTTCCAGAATGCCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTCCTCTTTTGCCACAGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTAAGAGTTTTTTCCTTCGCTGA

Coding sequence (CDS)

ATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGACAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGTAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAGCCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATATGTTATGGCTTGGCCCTTTTATGGCGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGTAGCCACTGAACGAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTCATAAATTGGGGGTTATCAAGACCAATGTTGCGAGCTTCCAGAATGCCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTCCTCTTTTGCCACAGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTAAGAGTTTTTTCCTTCGCTGA

Protein sequence

MERLIEEKLMNGPATRQDLMIVNMGPHHPSMHDVIDCEPILGYLHRGMEKIVENRTIIQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGPFMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYECYDEFDWEVQLAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKPPLLPQIPFLLYFHFLIKSFFLR

Homology

[Close]

BLAST of ClCG10G006000 vs. NCBI nr
Match: YP_009326046.1 (NADH dehydrogenase subunit 7 [Citrullus lanatus] >YP_009348088.1 NADH dehydrogenase subunit 7 [Citrullus mucosospermus] >YP_009431613.1 NADH dehydrogenase subunit 7 [Citrullus amarus] >APW82519.1 NADH dehydrogenase subunit 7 [Citrullus lanatus subsp. vulgaris] >QZL38740.1 NADH dehydrogenase subunit H [Citrullus ecirrhosus] >APD52538.1 NADH dehydrogenase subunit 7 [Citrullus lanatus] >APW82604.1 NADH dehydrogenase subunit 7 [Citrullus lanatus subsp. vulgaris] >APW82689.1 NADH dehydrogenase subunit 7 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 446.0 bits (1146), Expect = 2.2e-121
Identity = 231/315 (73.33%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATRQDLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRQDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. NCBI nr
Match: YP_009420851.1 (NADH dehydrogenase subunit 7 [Citrullus colocynthis] >YP_009431699.1 NADH dehydrogenase subunit 7 [Citrullus rehmii] >YP_009456203.1 NADH dehydrogenase subunit 7 [Lagenaria siceraria] >QNM38588.1 NADH-plastoquinone oxidoreductase subunit 7 [Lagenaria siceraria var. microcarpa] >QZL38651.1 NADH dehydrogenase subunit H [Citrullus naudinianus] >ASP44514.1 NADH dehydrogenase subunit 7 [Citrullus colocynthis] >ASY96295.1 NADH dehydrogenase subunit 7 [Citrullus rehmii] >AUJ21968.1 NADH dehydrogenase subunit 7 [Lagenaria siceraria])

HSP 1 Score: 444.5 bits (1142), Expect = 6.5e-121
Identity = 230/315 (73.02%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. NCBI nr
Match: YP_009317442.1 (NADH dehydrogenase subunit 7 [Coccinia grandis] >AOX48740.1 NADH dehydrogenase subunit 7 [Coccinia grandis] >AOX48825.1 NADH dehydrogenase subunit 7 [Coccinia grandis])

HSP 1 Score: 444.1 bits (1141), Expect = 8.5e-121
Identity = 229/315 (72.70%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRK+DHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKIDHYE 240

[Close]

BLAST of ClCG10G006000 vs. NCBI nr
Match: YP_010131142.1 (NADH-plastoquinone oxidoreductase subunit 7 [Benincasa hispida] >QPZ75790.1 NADH-plastoquinone oxidoreductase subunit 7 [Benincasa hispida] >QSQ72367.1 NADH dehydrogenase subunit H [Benincasa hispida])

HSP 1 Score: 442.2 bits (1136), Expect = 3.2e-120
Identity = 229/315 (72.70%), Postives = 232/315 (73.65%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI E RTI
Sbjct: 1   MNGPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAETRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. NCBI nr
Match: YP_009752467.1 (NADH dehydrogenase subunit H [Trichosanthes tricuspidata] >YP_009753760.1 NADH dehydrogenase subunit H [Trichosanthes nervifolia] >QIT04863.1 NADH dehydrogenase subunit H [Trichosanthes tricuspidata] >QIT05371.1 NADH dehydrogenase subunit H [Trichosanthes nervifolia])

HSP 1 Score: 441.8 bits (1135), Expect = 4.2e-120
Identity = 227/315 (72.06%), Postives = 231/315 (73.33%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRNDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVG+ISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTGVAEYQKLITQNPIFLERVEGVGVISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 3.6e-122
Identity = 228/315 (72.38%), Postives = 231/315 (73.33%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVD YE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDRYE 240

[Close]

BLAST of ClCG10G006000 vs. ExPASy Swiss-Prot
Match: B1A990 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya OX=3649 GN=ndhH PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 7.7e-117
Identity = 218/322 (67.70%), Postives = 227/322 (70.50%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PAT +D MIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPATGKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGIAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 249
                               ERVEGVGII GEE INWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWEVQ              ++EMTES+KIIQQALEGIPGGPYENLEIR FDR + 
Sbjct: 241 CYDEFDWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRKKD 300

[Close]

BLAST of ClCG10G006000 vs. ExPASy Swiss-Prot
Match: Q2L953 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium hirsutum OX=3635 GN=ndhH PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 5.0e-116
Identity = 214/322 (66.46%), Postives = 227/322 (70.50%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN  AT +DLMIVNMGPHHPSMH            DV+DCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNLSATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWLDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 249
                               ERVEG+G+I GEE INWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGIVEYQKLITRNPIFLERVEGIGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWE+Q              ++EMTES+KIIQQALEGIPGGPYENLEIR FDR R 
Sbjct: 241 CYDEFDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERD 300

[Close]

BLAST of ClCG10G006000 vs. ExPASy Swiss-Prot
Match: Q09WW2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Morus indica OX=248361 GN=ndhH PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.5e-115
Identity = 215/322 (66.77%), Postives = 226/322 (70.19%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PA R+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPAPRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI +NGPE LGNIQVPKRASYIR IMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITINGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           F+ADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FLADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 249
                               ERVEGVG+I  EEVINWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLIGVTEYQKLITRNPIFLERVEGVGVIGREEVINWGLSGPMLRASGIQWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWEVQ              + EMTES+KIIQQALEGIPGGPYENLEIR FDR R+
Sbjct: 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRYFDRERN 300

[Close]

BLAST of ClCG10G006000 vs. ExPASy Swiss-Prot
Match: A0ZZ91 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium barbadense OX=3634 GN=ndhH PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.2e-115
Identity = 213/322 (66.15%), Postives = 226/322 (70.19%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN  AT +DLMIVNMGPHHPSMH            DV+DCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNLSATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWLDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 249
                               ERVEG+G+I GEE INWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGIVEYQKLITRNPIFLERVEGIGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWE+Q              ++EMTES+KIIQQALEGIPGGPYENLEIR FDR R 
Sbjct: 241 CYDEFDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERD 300

[Close]

BLAST of ClCG10G006000 vs. ExPASy TrEMBL
Match: A0A1P8LE44 (NADH-quinone oxidoreductase subunit D OS=Citrullus mucosospermus OX=519315 GN=ndhH PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.1e-121
Identity = 231/315 (73.33%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATRQDLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRQDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. ExPASy TrEMBL
Match: A0A1P8LEK8 (NADH-quinone oxidoreductase subunit D OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ndhH PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.1e-121
Identity = 231/315 (73.33%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATRQDLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRQDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. ExPASy TrEMBL
Match: A0A343A8G8 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrullus lanatus OX=3654 GN=ndhH PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.1e-121
Identity = 231/315 (73.33%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATRQDLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRQDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. ExPASy TrEMBL
Match: A0A249RX59 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrullus amarus OX=1567104 GN=ndhH PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.1e-121
Identity = 231/315 (73.33%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATRQDLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRQDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. ExPASy TrEMBL
Match: A0A2I6C0C5 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Lagenaria siceraria OX=3668 GN=ndhH PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.1e-121
Identity = 230/315 (73.02%), Postives = 233/315 (73.97%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVDHYE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDHYE 240

[Close]

BLAST of ClCG10G006000 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 406.8 bits (1044), Expect = 1.4e-113
Identity = 208/315 (66.03%), Postives = 220/315 (69.84%), Query Frame = 0


Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           M  P T +DLMIVNMGPHHPSMH            DV+DCEPILGYLHRGMEKI ENR I
Sbjct: 1   MKRPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVAT------------------------------- 189
           FMADIGAQTPFFYIFRERE VYDLFE AT                               
Sbjct: 121 FMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCD 180

Query: 190 --------------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
                               ERVEGVGII GEE INWGLS PMLRAS +PWDLRK+D YE
Sbjct: 181 YFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYE 240

[Close]

BLAST of ClCG10G006000 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-29
Identity = 79/272 (29.04%), Postives = 124/272 (45.59%), Query Frame = 0


Query: 23  NMGPHHPSMH-----------DVID-CEPILGYLHRGMEKIVENRTIIQYLPYVTRWDYL 82
           N GP HP+ H           +V++  EP +G LHRG EK++E +T +Q LPY  R DY+
Sbjct: 14  NFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYV 73

Query: 83  ATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGPFMADIGAQTPFFY 142
           + M  E    +  E+L N +VP RA YIRV+  E++RI++H L L     D+GA TPF +
Sbjct: 74  SMMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLW 133

Query: 143 IFRERELVYDLFE----------------------------------------------- 202
            F ERE + + +E                                               
Sbjct: 134 AFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMS 193

Query: 203 ----VATERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYECYDEFDWEV---- 218
               +  +R+  +G ++ ++  +WG S  MLR   + WD R+   Y+ +D+ D +V    
Sbjct: 194 TGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGT 253

The following BLAST results are available for this feature:

BLAST of ClCG10G006000 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009326046.1	2.2e-121	73.33	NADH dehydrogenase subunit 7 [Citrullus lanatus] >YP_009348088.1 NADH dehydrogen...	[more]
YP_009420851.1	6.5e-121	73.02	NADH dehydrogenase subunit 7 [Citrullus colocynthis] >YP_009431699.1 NADH dehydr...	[more]
YP_009317442.1	8.5e-121	72.70	NADH dehydrogenase subunit 7 [Coccinia grandis] >AOX48740.1 NADH dehydrogenase s...	[more]
YP_010131142.1	3.2e-120	72.70	NADH-plastoquinone oxidoreductase subunit 7 [Benincasa hispida] >QPZ75790.1 NADH...	[more]
YP_009752467.1	4.2e-120	72.06	NADH dehydrogenase subunit H [Trichosanthes tricuspidata] >YP_009753760.1 NADH d...	[more]

BLAST of ClCG10G006000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL2	3.6e-122	72.38	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]
B1A990	7.7e-117	67.70	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya OX=3649...	[more]
Q2L953	5.0e-116	66.46	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium hirsutum OX...	[more]
Q09WW2	2.5e-115	66.77	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Morus indica OX=24836...	[more]
A0ZZ91	4.2e-115	66.15	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium barbadense ...	[more]

BLAST of ClCG10G006000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LE44	1.1e-121	73.33	NADH-quinone oxidoreductase subunit D OS=Citrullus mucosospermus OX=519315 GN=nd...	[more]
A0A1P8LEK8	1.1e-121	73.33	NADH-quinone oxidoreductase subunit D OS=Citrullus lanatus subsp. vulgaris OX=26...	[more]
A0A343A8G8	1.1e-121	73.33	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrullus lanatus OX=...	[more]
A0A249RX59	1.1e-121	73.33	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrullus amarus OX=1...	[more]
A0A2I6C0C5	3.1e-121	73.02	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Lagenaria siceraria O...	[more]

BLAST of ClCG10G006000 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	1.4e-113	66.03	NAD(P)H dehydrogenase subunit H	[more]
ATMG00510.1	3.6e-29	29.04	NADH dehydrogenase subunit 7	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 144..221 e-value: 9.0E-20 score: 70.9
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 19..145 e-value: 3.0E-40 score: 140.1 coord: 146..235 e-value: 1.2E-21 score: 79.0
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 34..220
None	No IPR available	PANTHER	PTHR11993:SF39	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 146..248 coord: 11..146
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 11..146
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 146..248
IPR014029	NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site	PROSITE	PS00535	COMPLEX1_49K	coord: 44..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006000.1	ClCG10G006000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H