ClCG10G005980 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G005980
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerase subunit beta
Location	CG_Chr10: 7990953 .. 7993413 (+)
RNA-Seq Expression	ClCG10G005980
Synteny	ClCG10G005980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCAACTTTCAACCAAGCTAGAAGCTAGTCTTTACTTTTTTTTTTTTTTTTTTTTTGTAATGTATGTGTTTTGGGACAATTATGTAACTTTGTTGTCAAACTTCTTTTATGTATTTGTAACATTATGGATTTATGGATCTAATGAACCATATGGATTGATGTATTACTAATTTTATATAATATTGTATTGATGTTGCTTATGACTTGGTATAATTTGTTTCTTTTTATGTACAAACCAATTGGTATGAAGCAGGTATTTTGAAACCAAAAAATTGGCTTATGCCGACGCCACATTAAGGTGGCGTCAGCATTTCAAGGATATGGCAACGACACATTATAATCATCGACATATAAAAACTACCGATACTATATGTGTGTCATCATCATTGTAGAGATACGTCGATGTTGGTTGCACACCTTCGGCATCTAAGAACTACCGACGCGGCATTGAATCGTCAACATATCCTACTTATGCCAACGCATTTTGCTAGCGTCGACATAGCATCGACTTCATGACTGCTGTTGATAGTTCCATTCAACGTTGACCCTTATGTTTTAAGTGTCAACGTTGGGTTCGGCGATGGACCTACGCCAATGCTAACCGTCGACGGCTACATTGCATCGGGATAGGATACGCCAACACTTTTTTCAACCTACGCCAACATTCATTAGCATTGAAAAAAGTAAGATTTCTCGTAGTGACAGGTCATAGTGTCGTGGCGTTGTCATGAAGTCGTGCGCAACAAATCTTCGGAGCACCGTGGCATTGTGTGTTTTGCACAAAAATATCTCATTCTGTAAGCAAGATGAGTACGACACTATAAGGAGCTATAACCCTGTGTCTGCAGTGGTAAAATCGTAATTTCAGCCTTCTCTTTTCCAGTTGATGGAATAAAGCTTTTTTTTTTTTTTTTTTTTTGCCCCTTTTAGCTCCATTTAGCTAGGCCCCATTCTACCCTTCAACTGCTCGAAACCTATAAAACAATCAAATAAACATATAAAACCAATGAATAATGACAAACTAAGCAGAGCAAGATAGCACATTTTCAATGTTATCAATTGGTAAGAATTAGTACAAACTTAATTTGTAAGCAATCAACTTAGCTTTTAGTTTTAATTTACCTAATTGGCTTTTATTTAGGAGTTAGTGGTCATATTAGTTGGATTGATTAAGGAAGGCTTTTAGGGTTAAGTGGTAAGTTTGAACGTTAGTGCATTAGAGAGTAGTTTCTTATTTGCCTATAAATACTTCTAATGTTTCCACCTTAATGAATATAAAACTCAACTGAAGCACTTCATCCTTTGTGTGATAATTCTCTCTTGTTTTCAACTTTTATATCCAAGCTCATTAGTTTACCCCCATCTATCTGAATGATCGGTCTCAGCTCAGGAGGAAGAACAGGTAATAGACATAAAACCATCCATTCGGGTTCTATATTTGTTCGAATAAAATGCTTAGCTAATTCCATACATCTAACCAAAAAATCCTTTCTTCTTCCAACTTTTCGATCTTCCCATTCATTACCCGCGGGTCCTTCTTCGCCTAATTCTTTCCATTCTACCAAGGAATAATCTATAATAAGTCGCAAATCCAGATCGACTAATTGTTCTCGTATAGCACCTGCTCCGGTAGAAATTTCTCGATTTCGAAATGTATCGAAGCCGTGGGTAGTAAAAAAAAGTGGGATGCTGTATTTCCAAGATTGGATTTCATATTCGAATGAACCCTATTCTCTTCGTTTGTTGTTTTTTGCTACATCTATTAGATCAATAGATAAAAATTAGTAAAATAGTGAACTTAATATTAAGAACAAAACGATTGATAAAAAAAAACAATAAATTACTAATAACAATGTATCACTAGTATACCATTTTTATTATATATAAGCGATCGATATGTATTAATGTTAGAGTTTCAGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGATTTAATCTTGATATACCTGAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGACTAAAATTTGGAATGGGTACACTTGACGATATGAATCATTTCAAAAATAAACGGATTTGTTCTGTTTATGATAATGAATGAAGCTGATGGCCTTGATAACGTGCATTATAGCGGTCATGGTCTTGGTGCGGATTACCCCGCCTCCCCCTGTAAAGAACTGCTATTATAAGAGAATGAATTAAGATATTAAATCATCCTCCTATCTTCGACAAAAAGAACAGTTTTCTTCGCGTTCCATTATACCTCGGTCTATGGATTGGACAAATTTTTCATTGAGAGAAAAAAAGATGAAAGATCTGACTGCTAGAACAAACACCATACTAAAAAAAATTGAAAAAATTAGAAAAGACATGAAAAAAGAGTTTCTAAATACATAA

mRNA sequence

GACCAACTTTCAACCAAGCTAGAAGCTAAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGATTTAATCTTGATATACCTGAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGACTAAAATTTGGAATGGATATTAAATCATCCTCCTATCTTCGACAAAAAGAACAGTTTTCTTCGCGTTCCATTATACCTCGGTCTATGGATTGGACAAATTTTTCATTGAGAGAAAAAAAGATGAAAGATCTGACTGCTAGAACAAACACCATACTAAAAAAAATTGAAAAAATTAGAAAAGACATGAAAAAAGAGTTTCTAAATACATAA

Coding sequence (CDS)

GACCAACTTTCAACCAAGCTAGAAGCTAAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGATTTAATCTTGATATACCTGAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGACTAAAATTTGGAATGGATATTAAATCATCCTCCTATCTTCGACAAAAAGAACAGTTTTCTTCGCGTTCCATTATACCTCGGTCTATGGATTGGACAAATTTTTCATTGAGAGAAAAAAAGATGAAAGATCTGACTGCTAGAACAAACACCATACTAAAAAAAATTGAAAAAATTAGAAAAGACATGAAAAAAGAGTTTCTAAATACATAA

Protein sequence

DQLSTKLEAKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFGMDIKSSSYLRQKEQFSSRSIIPRSMDWTNFSLREKKMKDLTARTNTILKKIEKIRKDMKKEFLNT

Homology

[Close]

BLAST of ClCG10G005980 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial [Lagenaria siceraria])

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 228 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 287

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 288 MGTLDDMNHLKNK 300

[Close]

BLAST of ClCG10G005980 vs. NCBI nr
Match: YP_009753697.1 (RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymerase subunit beta [Trichosanthes nervifolia])

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. NCBI nr
Match: AHM90682.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-26
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLL RDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLQRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.9e-26
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRN+N+R NLDIP+NNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFG 299

Query: 69  MD-IKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGALDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.9e-26
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRN+N+R NLDIP+NNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFG 299

Query: 69  MD-IKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGALDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.9e-26
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRN+N+R NLDIP+NNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFG 299

Query: 69  MD-IKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGALDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy Swiss-Prot
Match: P06271 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum OX=4097 GN=rpoB PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.9e-26
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRN+N+R NLDIP+NNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFG 299

Query: 69  MD-IKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGALDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy TrEMBL
Match: A0A1P8LDX8 (DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN=rpoB PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy TrEMBL
Match: A0A6M3RVI4 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpoB PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy TrEMBL
Match: A0A2Z2CGF9 (DNA-directed RNA polymerase subunit beta OS=Coccinia grandis OX=387127 GN=rpoB PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. ExPASy TrEMBL
Match: X2F5U4 (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFFQQRCELGRIGRRNLNQR NLDIPENNTFLLPRDILAAADHLIGLKFG
Sbjct: 240 SESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLLPRDILAAADHLIGLKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

[Close]

BLAST of ClCG10G005980 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-24
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 9   AKSLCKELQKKFFQQRCELGRIGRRNLNQRFNLDIPENNTFLLPRDILAAADHLIGLKFG 68
           ++SLCKELQKKFF QRCELGRIGRRN+N R NL+IP+NN FLLPRD+LAAADHLIG+KFG
Sbjct: 240 SESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDVLAAADHLIGMKFG 299

Query: 69  M-DIKSSSYLRQK 81
           M  +   ++L+ K
Sbjct: 300 MGTLDDMNHLKNK 312

The following BLAST results are available for this feature:

BLAST of ClCG10G005980 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM89856.1	4.8e-24	82.19	RNA polymerase beta subunit [Lagenaria siceraria]	[more]
YP_009753166.1	4.8e-24	82.19	RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ...	[more]
AHM88854.1	4.8e-24	82.19	RNA polymerase beta subunit, partial [Lagenaria siceraria]	[more]
YP_009753697.1	4.8e-24	82.19	RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymeras...	[more]
AHM90682.1	4.8e-24	82.19	RNA polymerase beta subunit [Lagenaria siceraria]	[more]

BLAST of ClCG10G005980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	5.3e-26	80.82	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
Q8S8X9	6.9e-26	78.08	DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P...	[more]
Q3C1G7	6.9e-26	78.08	DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB...	[more]
Q33C46	6.9e-26	78.08	DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN...	[more]
P06271	6.9e-26	78.08	DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum OX=4097 GN=rpoB PE...	[more]

BLAST of ClCG10G005980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ETN6	2.3e-24	82.19	DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A1P8LDX8	2.3e-24	82.19	DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN...	[more]
A0A6M3RVI4	2.3e-24	82.19	DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonic...	[more]
A0A2Z2CGF9	2.3e-24	82.19	DNA-directed RNA polymerase subunit beta OS=Coccinia grandis OX=387127 GN=rpoB P...	[more]
X2F5U4	2.3e-24	82.19	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]

BLAST of ClCG10G005980 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	1.7e-24	71.23	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 17..69 e-value: 5.7E-13 score: 48.9
IPR037034	RNA polymerase Rpb2, domain 2 superfamily	GENE3D	3.90.1110.10	RNA polymerase Rpb2, domain 2	coord: 4..72 e-value: 7.5E-13 score: 50.7
None	No IPR available	PANTHER	PTHR20856:SF30	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 16..108
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 16..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G005980.1	ClCG10G005980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding