ClCG10G005850 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G005850
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	50S ribosomal protein L2, chloroplastic
Location	CG_Chr10: 7355786 .. 7357216 (+)
RNA-Seq Expression	ClCG10G005850
Synteny	ClCG10G005850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGACAGTCAAGTAAAATCTAATCCACAAAATAATTTGATCTGTGGACAACATCATTGTGGTAAAGGTCATAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGTGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACAACCCTAATAAAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTAAGTAATTGGAAGTAACCAATTAGGTTTACGACGAAATCTAGAAATCGATCATTAATCCAATTTGAGTACCTCCATAGGATAGACCTCAACAGAAAACTGAAGAGTAACGACAGCAAGTGATTGAGTTTAGTAGTTCCTTATATAAAATTATTGACTATAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGCGAGCAGGACGAGTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGAAAAAATAGAGATGTCTCCTACGTTACCTGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTTGGTCTGAATGCTACATGAAAAACATAAGCCAGAGGAAGGAACAGGAAGACCTAGGATGTGGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAACTTGTACAGTTTGGGAAGGGGTTTTGATTGATAAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCAGTACATAACATAGAAATCACAGTTGGGAAGGGGGGACAATTAGCTAGAGTAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCAGCCACATTAAAATTACCTTCTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGCAACAGTCAGACAAATAGGGAATGTTGGAGTAAACAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCTCCATGGGGGTGGTGAAGGGAGAGTCGCAATTGGTAAAAAAAAAACCTGCAACCCCTTGGGATTATCCGGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCACCGTAGTAAA

mRNA sequence

GTAGACAGTCAAGTAAAATCTAATCCACAAAATAATTTGATCTGTGGACAACATCATTGTGGTAAAGGTCATAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGTGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCAATACAACCCTAATAAAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTATCATCTCCATGGGGGTGGTGAAGGGAGAGTCGCAATTGGTAAAAAAAAAACCTGCAACCCCTTGGGATTATCCGGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCACCGTAGTAAA

Coding sequence (CDS)

GTAGACAGTCAAGTAAAATCTAATCCACAAAATAATTTGATCTGTGGACAACATCATTGTGGTAAAGGTCATAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGTGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCAATACAACCCTAATAAAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTATCATCTCCATGGGGGTGGTGAAGGGAGAGTCGCAATTGGTAAAAAAAAAACCTGCAACCCCTTGGGATTATCCGGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCACCGTAGTAAA

Protein sequence

VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRINTTLIKNAYICLIHYGDGEKRYILHPRGAIIGDTIIISMGVVKGESQLVKKKPATPWDYPGRRSRKRNKYSDNLILRHRSK

Homology

[Close]

BLAST of ClCG10G005850 vs. NCBI nr
Match: AVZ03179.1 (ribosomal protein L2 [Ostrya rehderiana])

HSP 1 Score: 221.9 bits (564), Expect = 3.6e-54
Identity = 116/156 (74.36%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVK NP+NNLI GQHHCGKG N+RGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKYNPRNNLIYGQHHCGKGRNSRGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII------ISMGVV-----KGESQ 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+      I MG       +G + 
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSGEGRAP 137

Query: 121 LVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRSK 141
           + +KKPATPW YP  GRRSRKRNKYSDNLILR RSK
Sbjct: 138 IGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 173

[Close]

BLAST of ClCG10G005850 vs. NCBI nr
Match: YP_009231312.1 (ribosomal protein L2 [Tetrastigma hemsleyanum] >ALV89990.1 ribosomal protein L2 [Tetrastigma hemsleyanum])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 116/158 (73.42%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII------ISMGVV-------KGE 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+      I MG         +G 
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSGGGEGR 137

Query: 121 SQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRSK 141
           + + +KKP TPW YP  GRRSRKRNKYSDNLILR RSK
Sbjct: 138 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 175

[Close]

BLAST of ClCG10G005850 vs. NCBI nr
Match: YP_009867051.1 (ribosomal protein L2 [Tongoloa silaifolia] >QKG03050.1 ribosomal protein L2 [Tongoloa silaifolia])

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 115/181 (63.54%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDS+VKSNP+NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSRVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVCWLG 137

Query: 121 ---ISMGVV-----------KGESQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRS 141
              +  GVV           +G + + +KKP TPW YP  GRRSRKRNKYSDNLILR RS
Sbjct: 138 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 197

[Close]

BLAST of ClCG10G005850 vs. NCBI nr
Match: YP_009387707.1 (ribosomal protein L2 [Hansenia forbesii] >QHS71267.1 ribosomal protein L2 [Haplosphaera phaea] >ART32559.1 ribosomal protein L2 [Hansenia forbesii] >QHV37973.1 ribosomal protein L2 [Hansenia forbesii] >QHV38143.1 ribosomal protein L2 [Hansenia forbesii] >QHV38228.1 ribosomal protein L2 [Hansenia forbesii])

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-50
Identity = 114/181 (62.98%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDS+VKSN +NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSRVKSNTRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVCWLG 137

Query: 121 ---ISMGVV-----------KGESQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRS 141
              +  GVV           +G + + +KKP TPW YP  GRRSRKRNKYSDNLILR RS
Sbjct: 138 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 197

[Close]

BLAST of ClCG10G005850 vs. NCBI nr
Match: QHV38059.1 (ribosomal protein L2 [Hansenia forbesii])

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-49
Identity = 113/181 (62.43%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDS+VKSN +NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSRVKSNTRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVCWLG 137

Query: 121 ---ISMGVV-----------KGESQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRS 141
              +  GVV           +G + + +KKP TPW YP  GRRSRK+NKYSDNLILR RS
Sbjct: 138 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKKNKYSDNLILRRRS 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy Swiss-Prot
Match: Q68RU2 (50S ribosomal protein L2, chloroplastic OS=Panax ginseng OX=4054 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.7e-46
Identity = 117/257 (45.53%), Postives = 125/257 (48.64%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQHHCGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-45
Identity = 117/257 (45.53%), Postives = 125/257 (48.64%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAG 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy Swiss-Prot
Match: Q3C1N6 (50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-45
Identity = 116/257 (45.14%), Postives = 124/257 (48.25%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQHHCGKG NARGIITA HRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy Swiss-Prot
Match: Q33BZ0 (50S ribosomal protein L2, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-45
Identity = 116/257 (45.14%), Postives = 124/257 (48.25%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQHHCGKG NARGIITA HRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy Swiss-Prot
Match: P06379 (50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum OX=4097 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-45
Identity = 116/257 (45.14%), Postives = 124/257 (48.25%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQHHCGKG NARGIITA HRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy TrEMBL
Match: A0A2R4QWQ5 (Ribosomal protein L2 OS=Ostrya rehderiana OX=80755 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 116/156 (74.36%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVK NP+NNLI GQHHCGKG N+RGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKYNPRNNLIYGQHHCGKGRNSRGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII------ISMGVV-----KGESQ 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+      I MG       +G + 
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSGEGRAP 137

Query: 121 LVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRSK 141
           + +KKPATPW YP  GRRSRKRNKYSDNLILR RSK
Sbjct: 138 IGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 173

[Close]

BLAST of ClCG10G005850 vs. ExPASy TrEMBL
Match: A0A0U3T8Z0 (Ribosomal protein L2 OS=Tetrastigma hemsleyanum OX=1006121 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.5e-54
Identity = 116/158 (73.42%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII------ISMGVV-------KGE 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+      I MG         +G 
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSGGGEGR 137

Query: 121 SQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRSK 141
           + + +KKP TPW YP  GRRSRKRNKYSDNLILR RSK
Sbjct: 138 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 175

[Close]

BLAST of ClCG10G005850 vs. ExPASy TrEMBL
Match: A0A6M8NZB3 (Ribosomal protein L2 OS=Tongoloa silaifolia OX=496702 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.2e-51
Identity = 115/181 (63.54%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDS+VKSNP+NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSRVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVCWLG 137

Query: 121 ---ISMGVV-----------KGESQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRS 141
              +  GVV           +G + + +KKP TPW YP  GRRSRKRNKYSDNLILR RS
Sbjct: 138 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy TrEMBL
Match: A0A1Y0B575 (Ribosomal protein L2 OS=Hansenia forbesii OX=165499 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 114/181 (62.98%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDS+VKSN +NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSRVKSNTRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVCWLG 137

Query: 121 ---ISMGVV-----------KGESQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRS 141
              +  GVV           +G + + +KKP TPW YP  GRRSRKRNKYSDNLILR RS
Sbjct: 138 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 197

[Close]

BLAST of ClCG10G005850 vs. ExPASy TrEMBL
Match: A0A6C0AAT4 (Ribosomal protein L2 OS=Haplosphaera phaea OX=239646 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 114/181 (62.98%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDS+VKSN +NNLI GQH CGKG NARGIITAGHRGGGHK LYRKIDFRRNEKDIYGRI 
Sbjct: 18  VDSRVKSNTRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVCWLG 137

Query: 121 ---ISMGVV-----------KGESQLVKKKPATPWDYP--GRRSRKRNKYSDNLILRHRS 141
              +  GVV           +G + + +KKP TPW YP  GRRSRKRNKYSDNLILR RS
Sbjct: 138 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 197

[Close]

BLAST of ClCG10G005850 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 177.2 bits (448), Expect = 9.4e-45
Identity = 112/257 (43.58%), Postives = 122/257 (47.47%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLICGQHHCGKG NARGIITA HRGGGHK LYRKIDFRRN KDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 197

[Close]

BLAST of ClCG10G005850 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 177.2 bits (448), Expect = 9.4e-45
Identity = 112/257 (43.58%), Postives = 122/257 (47.47%), Query Frame = 0


Query: 1   VDSQVKSNPQNNLICGQHHCGKGHNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGRIN 60
           VDSQVKSNP+NNLICGQHHCGKG NARGIITA HRGGGHK LYRKIDFRRN KDIYGRI 
Sbjct: 18  VDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIV 77

Query: 61  TTLI---KNAYICLIHYGDGEKRYILHPRGAIIGDTII---------------------- 120
           T      +NAYICLIHYGDGEKRYILHPRGAIIGDTI+                      
Sbjct: 78  TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGT 137

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 138 AIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG 197

The following BLAST results are available for this feature:

BLAST of ClCG10G005850 vs. NCBI nr


Match Name	E-value	Identity	Description
AVZ03179.1	3.6e-54	74.36	ribosomal protein L2 [Ostrya rehderiana]	[more]
YP_009231312.1	1.4e-53	73.42	ribosomal protein L2 [Tetrastigma hemsleyanum] >ALV89990.1 ribosomal protein L2 ...	[more]
YP_009867051.1	1.1e-50	63.54	ribosomal protein L2 [Tongoloa silaifolia] >QKG03050.1 ribosomal protein L2 [Ton...	[more]
YP_009387707.1	9.1e-50	62.98	ribosomal protein L2 [Hansenia forbesii] >QHS71267.1 ribosomal protein L2 [Haplo...	[more]
QHV38059.1	2.0e-49	62.43	ribosomal protein L2 [Hansenia forbesii]	[more]

BLAST of ClCG10G005850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q68RU2	3.7e-46	45.53	50S ribosomal protein L2, chloroplastic OS=Panax ginseng OX=4054 GN=rpl2-A PE=3 ...	[more]
Q4VZK5	1.1e-45	45.53	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q3C1N6	3.1e-45	45.14	50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl2-...	[more]
Q33BZ0	3.1e-45	45.14	50S ribosomal protein L2, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=...	[more]
P06379	3.1e-45	45.14	50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum OX=4097 GN=rpl2-A P...	[more]

BLAST of ClCG10G005850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R4QWQ5	1.7e-54	74.36	Ribosomal protein L2 OS=Ostrya rehderiana OX=80755 GN=rpl2 PE=3 SV=1	[more]
A0A0U3T8Z0	6.5e-54	73.42	Ribosomal protein L2 OS=Tetrastigma hemsleyanum OX=1006121 GN=rpl2 PE=3 SV=1	[more]
A0A6M8NZB3	5.2e-51	63.54	Ribosomal protein L2 OS=Tongoloa silaifolia OX=496702 GN=rpl2 PE=3 SV=1	[more]
A0A1Y0B575	4.4e-50	62.98	Ribosomal protein L2 OS=Hansenia forbesii OX=165499 GN=rpl2 PE=3 SV=1	[more]
A0A6C0AAT4	4.4e-50	62.98	Ribosomal protein L2 OS=Haplosphaera phaea OX=239646 GN=rpl2 PE=3 SV=1	[more]

BLAST of ClCG10G005850 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	9.4e-45	43.58	ribosomal protein L2	[more]
ATCG01310.1	9.4e-45	43.58	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 23..96 e-value: 9.3E-18 score: 75.0
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 5..98 coord: 100..138
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 23..95 e-value: 2.3E-18 score: 65.9
None	No IPR available	GENE3D	2.40.50.140		coord: 4..95 e-value: 1.3E-26 score: 94.5
None	No IPR available	PANTHER	PTHR13691:SF51	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 5..98 coord: 100..138
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G005850.1	ClCG10G005850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome