ClCG10G005210 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G005210
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 6418743 .. 6419484 (-)
RNA-Seq Expression	ClCG10G005210
Synteny	ClCG10G005210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTATTTGAGAGTAAGAATAGTAAGAGCTGAATATGATTGAGATCATAGGTAGGGTTGATGAAATGGCAAATATAGAAAGCTCCACGAGGCAGCCTAAGAGAATGCCATATAGATATCCTCTTCCATATTTATCACCCTCCATTCTCCAACATTCACTCAATTCATCTCAAACTACCCACTGGAAAATGAAGATAAAGATTATGTTTGGTATCCCAAGCAACATTATCTCCAGGCCAAATCCATTGCTCCAAGTCATTGCTTGTAGCTTTGTGGCTGATGACTGCGCATCCATTTTTGCTCGGCGCTATGATGGCAAAGCAAGTAAAGAGAAGGGCGACGAGGACAGCGGCGGTGAGAGATGTAAGGGGGACCGGGCTCCCTCGACGGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGCAGGGGAAGGAGGTGGTGCATGATGATGATAAGGGGGTGGCCAAAGAATCTGAAGCCATGGAGAAAAGTGGCGTGAATGACGACGACATAAACAAAGGGCCTAATTACCGGCCCTGTAGCTGATGGATCCCACTCTCAAATATGAATCCCCAACGGATTTTGCCAAAACTACTCTATATAACTTTCGTTTTCCCTTTTTATGTTGACTTTGGCATGTATAGTAATTACAAGTTTTTTGTTGGAGTGTGTAAAAAGCGTATAATTTGAGTGTAATTTTGATTTGTTTAAAAATATTCATGTACAAAACCCAACACATTCTTC

mRNA sequence

CCTTATTTGAGAGTAAGAATAGTAAGAGCTGAATATGATTGAGATCATAGGTAGGGTTGATGAAATGGCAAATATAGAAAGCTCCACGAGGCAGCCTAAGAGAATGCCATATAGATATCCTCTTCCATATTTATCACCCTCCATTCTCCAACATTCACTCAATTCATCTCAAACTACCCACTGGAAAATGAAGATAAAGATTATGTTTGGTATCCCAAGCAACATTATCTCCAGGCCAAATCCATTGCTCCAAGTCATTGCTTGTAGCTTTGTGGCTGATGACTGCGCATCCATTTTTGCTCGGCGCTATGATGGCAAAGCAAGTAAAGAGAAGGGCGACGAGGACAGCGGCGGTGAGAGATGTAAGGGGGACCGGGCTCCCTCGACGGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGCAGGGGAAGGAGGTGGTGCATGATGATGATAAGGGGGTGGCCAAAGAATCTGAAGCCATGGAGAAAAGTGGCGTGAATGACGACGACATAAACAAAGGGCCTAATTACCGGCCCTGTAGCTGATGGATCCCACTCTCAAATATGAATCCCCAACGGATTTTGCCAAAACTACTCTATATAACTTTCGTTTTCCCTTTTTATGTTGACTTTGGCATGTATAGTAATTACAAGTTTTTTGTTGGAGTGTGTAAAAAGCGTATAATTTGAGTGTAATTTTGATTTGTTTAAAAATATTCATGTACAAAACCCAACACATTCTTC

Coding sequence (CDS)

ATGATTGAGATCATAGGTAGGGTTGATGAAATGGCAAATATAGAAAGCTCCACGAGGCAGCCTAAGAGAATGCCATATAGATATCCTCTTCCATATTTATCACCCTCCATTCTCCAACATTCACTCAATTCATCTCAAACTACCCACTGGAAAATGAAGATAAAGATTATGTTTGGTATCCCAAGCAACATTATCTCCAGGCCAAATCCATTGCTCCAAGTCATTGCTTGTAGCTTTGTGGCTGATGACTGCGCATCCATTTTTGCTCGGCGCTATGATGGCAAAGCAAGTAAAGAGAAGGGCGACGAGGACAGCGGCGGTGAGAGATGTAAGGGGGACCGGGCTCCCTCGACGGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGCAGGGGAAGGAGGTGGTGCATGATGATGATAAGGGGGTGGCCAAAGAATCTGAAGCCATGGAGAAAAGTGGCGTGAATGACGACGACATAAACAAAGGGCCTAATTACCGGCCCTGTAGCTGA

Protein sequence

MIEIIGRVDEMANIESSTRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIPSNIISRPNPLLQVIACSFVADDCASIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGKEVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS

Homology

[Close]

BLAST of ClCG10G005210 vs. NCBI nr
Match: KGN56105.1 (hypothetical protein Csa_009481 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-15
Identity = 80/181 (44.20%), Postives = 100/181 (55.25%), Query Frame = 0


Query: 11  MANIESS----TRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIP----- 70
           MAN E+S     R+P+R+P   P  + S S L        T + KMK   +F        
Sbjct: 1   MANKETSKWHPMRRPRRLPTSSPFQHYSYSKLSLIKQMILTANIKMKKIGIFPTACRSNN 60

Query: 71  SNIISRPNPLLQVIACSFVADDCA-----SIFARRYDGKASKEKGDEDSGGERCKGDRAP 130
           +  +   NP   V + S+ +   A     S+F RRY GK SK++  E SGGER K +RAP
Sbjct: 61  NTNMGMTNPFQLVASYSYSSMSMADYFPPSLFPRRY-GKPSKDEA-EHSGGERSKAERAP 120

Query: 131 STAEEFNRVAAEKQGK-------EVVHDDDKGVAKESE-AMEKSGVNDDDINKGPNYRPC 170
           STAEEFNR+A EKQ K       + VH  DK  AKESE AMEKS   ++ INKGPNYRPC
Sbjct: 121 STAEEFNRMATEKQSKDHQEEEVDAVHGRDK-FAKESEAAMEKSHDPNNHINKGPNYRPC 178

[Close]

BLAST of ClCG10G005210 vs. NCBI nr
Match: XP_016900655.1 (PREDICTED: uncharacterized protein LOC107990980 isoform X1 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-14
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 42  LNSSQTTHWKMKIKI-MFGIP------SNIISRPNPLLQVIACSFVADDC-----ASIFA 101
           L  S T + + K+K+   GIP      +  ++  NPL QV+  S+ +        AS+F 
Sbjct: 13  LTQSHTDNSREKVKMKKIGIPIPTRRSNTNMAMSNPLFQVVIASYSSMSMPDYFPASLFP 72

Query: 102 RRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKES 161
           RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V KES
Sbjct: 73  RRCYGKPISKDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-VTKES 132

Query: 162 EAMEKSGVNDDDINKGPNYRPCS 170
             M KS   ++ INKGPNYRPCS
Sbjct: 133 GEMGKSSDPNNHINKGPNYRPCS 154

[Close]

BLAST of ClCG10G005210 vs. NCBI nr
Match: KAA0055854.1 (uncharacterized protein E6C27_scaffold104G00300 [Cucumis melo var. makuwa] >TYK24078.1 uncharacterized protein E5676_scaffold943G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-12
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 69  NPLLQVIACSFVADDC-----ASIFARR--YDGKASKEKGDEDSGGERCKGDRAPSTAEE 128
           NPL QV+  S+ +        AS+F RR  Y    SK++  E SGGER K +RAPSTAEE
Sbjct: 21  NPLFQVVIASYSSMSMPDYFPASLFPRRSCYGKPISKDEA-ERSGGERSKAERAPSTAEE 80

Query: 129 FNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS 170
           FNR+A EK+ K   E V + DK V KES  MEKS   ++ INKGPNYRPCS
Sbjct: 81  FNRMATEKESKDQEEEVDEHDK-VTKESGEMEKSSDPNNHINKGPNYRPCS 129

[Close]

BLAST of ClCG10G005210 vs. NCBI nr
Match: XP_016900656.1 (PREDICTED: uncharacterized protein LOC107990980 isoform X2 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 86  SIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGV 145
           S+F RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V
Sbjct: 40  SLFPRRCYGKPISKDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-V 99

Query: 146 AKESEAMEKSGVNDDDINKGPNYRPCS 170
            KES  M KS   ++ INKGPNYRPCS
Sbjct: 100 TKESGEMGKSSDPNNHINKGPNYRPCS 125

[Close]

BLAST of ClCG10G005210 vs. NCBI nr
Match: KAG6596946.1 (hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-07
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 64  IISRPNPLLQVIACSFVADDCASIFARRYDGKASKEK----GDEDSGGERCKGDRAPSTA 123
           II   NP+  ++ACS V     S+ ARRYD   + EK      E     R   DRAPS A
Sbjct: 11  IIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEKGTDHRSNTDRAPSMA 70

Query: 124 EEFNRVAAEKQGKEVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS 170
           EEFNR+A EK  KE      +   K+SE  +K+  +D +++ GPNYRPCS
Sbjct: 71  EEFNRIADEKHLKEA---PGRSSDKQSETSQKT-ASDQNLDDGPNYRPCS 116

[Close]

BLAST of ClCG10G005210 vs. ExPASy TrEMBL
Match: A0A0A0L2C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 80/181 (44.20%), Postives = 100/181 (55.25%), Query Frame = 0


Query: 11  MANIESS----TRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIP----- 70
           MAN E+S     R+P+R+P   P  + S S L        T + KMK   +F        
Sbjct: 1   MANKETSKWHPMRRPRRLPTSSPFQHYSYSKLSLIKQMILTANIKMKKIGIFPTACRSNN 60

Query: 71  SNIISRPNPLLQVIACSFVADDCA-----SIFARRYDGKASKEKGDEDSGGERCKGDRAP 130
           +  +   NP   V + S+ +   A     S+F RRY GK SK++  E SGGER K +RAP
Sbjct: 61  NTNMGMTNPFQLVASYSYSSMSMADYFPPSLFPRRY-GKPSKDEA-EHSGGERSKAERAP 120

Query: 131 STAEEFNRVAAEKQGK-------EVVHDDDKGVAKESE-AMEKSGVNDDDINKGPNYRPC 170
           STAEEFNR+A EKQ K       + VH  DK  AKESE AMEKS   ++ INKGPNYRPC
Sbjct: 121 STAEEFNRMATEKQSKDHQEEEVDAVHGRDK-FAKESEAAMEKSHDPNNHINKGPNYRPC 178

[Close]

BLAST of ClCG10G005210 vs. ExPASy TrEMBL
Match: A0A1S4DY64 (uncharacterized protein LOC107990980 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990980 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.6e-14
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 42  LNSSQTTHWKMKIKI-MFGIP------SNIISRPNPLLQVIACSFVADDC-----ASIFA 101
           L  S T + + K+K+   GIP      +  ++  NPL QV+  S+ +        AS+F 
Sbjct: 13  LTQSHTDNSREKVKMKKIGIPIPTRRSNTNMAMSNPLFQVVIASYSSMSMPDYFPASLFP 72

Query: 102 RRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKES 161
           RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V KES
Sbjct: 73  RRCYGKPISKDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-VTKES 132

Query: 162 EAMEKSGVNDDDINKGPNYRPCS 170
             M KS   ++ INKGPNYRPCS
Sbjct: 133 GEMGKSSDPNNHINKGPNYRPCS 154

[Close]

BLAST of ClCG10G005210 vs. ExPASy TrEMBL
Match: A0A5A7UKZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00480 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.8e-13
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 69  NPLLQVIACSFVADDC-----ASIFARR--YDGKASKEKGDEDSGGERCKGDRAPSTAEE 128
           NPL QV+  S+ +        AS+F RR  Y    SK++  E SGGER K +RAPSTAEE
Sbjct: 21  NPLFQVVIASYSSMSMPDYFPASLFPRRSCYGKPISKDEA-ERSGGERSKAERAPSTAEE 80

Query: 129 FNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS 170
           FNR+A EK+ K   E V + DK V KES  MEKS   ++ INKGPNYRPCS
Sbjct: 81  FNRMATEKESKDQEEEVDEHDK-VTKESGEMEKSSDPNNHINKGPNYRPCS 129

[Close]

BLAST of ClCG10G005210 vs. ExPASy TrEMBL
Match: A0A1S4DXE7 (uncharacterized protein LOC107990980 isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990980 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 86  SIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGV 145
           S+F RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V
Sbjct: 40  SLFPRRCYGKPISKDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-V 99

Query: 146 AKESEAMEKSGVNDDDINKGPNYRPCS 170
            KES  M KS   ++ INKGPNYRPCS
Sbjct: 100 TKESGEMGKSSDPNNHINKGPNYRPCS 125

The following BLAST results are available for this feature:

BLAST of ClCG10G005210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56105.1	3.9e-15	44.20	hypothetical protein Csa_009481 [Cucumis sativus]	[more]
XP_016900655.1	7.4e-14	45.45	PREDICTED: uncharacterized protein LOC107990980 isoform X1 [Cucumis melo]	[more]
KAA0055854.1	1.8e-12	53.15	uncharacterized protein E6C27_scaffold104G00300 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_016900656.1	1.3e-10	57.47	PREDICTED: uncharacterized protein LOC107990980 isoform X2 [Cucumis melo]	[more]
KAG6596946.1	1.8e-07	42.73	hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG10G005210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G005210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2C8	1.9e-15	44.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1	[more]
A0A1S4DY64	3.6e-14	45.45	uncharacterized protein LOC107990980 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UKZ4	8.8e-13	53.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DXE7	6.3e-11	57.47	uncharacterized protein LOC107990980 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of ClCG10G005210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G005210.2	ClCG10G005210.2	mRNA