ClCG10G004280 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G004280
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	nuclear transcription factor Y subunit B-3-like
Location	CG_Chr10: 5486885 .. 5487412 (+)
RNA-Seq Expression	ClCG10G004280
Synteny	ClCG10G004280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

mRNA sequence

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR

Homology

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BLAST of ClCG10G004280 vs. NCBI nr
Match: XP_022932338.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata])

HSP 1 Score: 331.3 bits (848), Expect = 5.2e-87
Identity = 166/180 (92.22%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHD LLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSAS-----AANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 176
           DS+S     AA  AGA NSTFFDGGGEFGGGMGM+MPPNVYGSNGPRWDGPGFTTTGRPR
Sbjct: 121 DSSSSASAVAAAAAGAANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

[Close]

BLAST of ClCG10G004280 vs. NCBI nr
Match: XP_023553390.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-87
Identity = 165/180 (91.67%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 D-----SASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 176
           D     SA+AA  AGA +S FFDGGGEFGGGMGM+MPPNVYGSNGPRWDGPGFTTTGRPR
Sbjct: 121 DSSSSASAAAATAAGAASSAFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

[Close]

BLAST of ClCG10G004280 vs. NCBI nr
Match: KAG6577523.1 (Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.5 bits (846), Expect = 8.9e-87
Identity = 166/184 (90.22%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 18  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 77

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 78  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 137

Query: 121 DS---------ASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTT 176
           DS         A+AA  AGA NS FFDGGGEFGGGMGM+MPPNVYGSNGPRWDGPGFTTT
Sbjct: 138 DSSSSASAAAAAAAAAAAGAANSAFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTT 197

[Close]

BLAST of ClCG10G004280 vs. NCBI nr
Match: XP_038905070.1 (nuclear transcription factor Y subunit B-3-like [Benincasa hispida])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 165/177 (93.22%), Postives = 169/177 (95.48%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGCQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEAS+KCHNEKRKTINGDDLLWAMATLGFEDYVDPLK +LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASEKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKFYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGGGMGMS-MPPNVYGSNGPRWDGPGFTTTGRPR 176
           DSA +AAN A A NSTFFDGGGEFG GMGM+ MPPNVYGSNGPRWDGPGFTTTGRPR
Sbjct: 121 DSANAAANSAAAANSTFFDGGGEFGDGMGMTMMPPNVYGSNGPRWDGPGFTTTGRPR 177

[Close]

BLAST of ClCG10G004280 vs. NCBI nr
Match: XP_022965194.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-85
Identity = 165/182 (90.66%), Postives = 169/182 (92.86%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASAA-----NPAGATNSTFFDGGGEFGGGMG--MSMPPNVYGSNGPRWDGPGFTTTGR 176
           DS+S+A       AGA NS FFDGGGEFGGGMG  M+MPPNVYGSNGPRWDGPGFTTTGR
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGGEFGGGMGMTMTMPPNVYGSNGPRWDGPGFTTTGR 180

[Close]

BLAST of ClCG10G004280 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.6e-52
Identity = 117/191 (61.26%), Postives = 127/191 (66.49%), Query Frame = 0


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMS---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]

BLAST of ClCG10G004280 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-49
Identity = 103/152 (67.76%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R         G    +   G   +GGGM  +M
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of ClCG10G004280 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.8e-48
Identity = 111/175 (63.43%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ----KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           M DSDNDSGG       +  SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGER-- 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK +L +FREIEGER  
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 -TTLASRDSASAANPAGATNSTFFDGG-------GEFGGGMGMSMPPNVYGSNGP 162
            +T  +  SA++  P    ++    GG       G   GGM M M   +YGS  P
Sbjct: 121 ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMMMGQPMYGSPPP 175

[Close]

BLAST of ClCG10G004280 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-46
Identity = 106/173 (61.27%), Postives = 122/173 (70.52%), Query Frame = 0


Query: 1   MADSDNDSGG--GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSE 60
           M DSDN+SGG     +  S RE DR LPIANV RIMK+ALP NAKISKDAKETVQECVSE
Sbjct: 1   MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60

Query: 61  FISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLA 120
           FISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDY+DPLKL+L +FRE+EGE+   A
Sbjct: 61  FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIGA 120

Query: 121 SRDSASAANPAGATNS----------TFFDGG-GEFGGGMG--MSMPPNVYGS 159
           +      A  +G + S          +  +GG G +GGG G  M M   +YGS
Sbjct: 121 AGSGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGGGMIMMMGQPMYGS 173

[Close]

BLAST of ClCG10G004280 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-41
Identity = 95/166 (57.23%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 2   ADSDNDSGGGYQKSPSP---------REHDRLLPIANVGRIMKKALPGNAKISKDAKETV 61
           A +    GGG  +S SP         RE DR LPIAN+ RIMKKA+P N KI+KDAKETV
Sbjct: 4   APASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 63

Query: 62  QECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEG 121
           QECVSEFISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK++LQ++RE+EG
Sbjct: 64  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 123

Query: 122 E-RTTLASRDSA---SAANPAGATNSTFFDGG--GEFGGGMGMSMP 153
           + + T  S D +    A    GA++S     G  G +  GMG   P
Sbjct: 124 DSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQP 169

[Close]

BLAST of ClCG10G004280 vs. ExPASy TrEMBL
Match: A0A6J1F1D9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111438720 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.5e-87
Identity = 166/180 (92.22%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHD LLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSAS-----AANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 176
           DS+S     AA  AGA NSTFFDGGGEFGGGMGM+MPPNVYGSNGPRWDGPGFTTTGRPR
Sbjct: 121 DSSSSASAVAAAAAGAANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

[Close]

BLAST of ClCG10G004280 vs. ExPASy TrEMBL
Match: A0A6J1HQB9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111465124 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 165/182 (90.66%), Postives = 169/182 (92.86%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASAA-----NPAGATNSTFFDGGGEFGGGMG--MSMPPNVYGSNGPRWDGPGFTTTGR 176
           DS+S+A       AGA NS FFDGGGEFGGGMG  M+MPPNVYGSNGPRWDGPGFTTTGR
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGGEFGGGMGMTMTMPPNVYGSNGPRWDGPGFTTTGR 180

[Close]

BLAST of ClCG10G004280 vs. ExPASy TrEMBL
Match: A0A0A0L4U4 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G047800 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 168/184 (91.30%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--SMPPNVYGSNGPRWDGPGFTTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  +MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]

BLAST of ClCG10G004280 vs. ExPASy TrEMBL
Match: A0A5A7VDK6 (Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00130 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.0e-85
Identity = 166/185 (89.73%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA--SAANPAGATNSTFFDGGGEFGGGMG--------MSMPPNVYGSNGPRWDGPGFTT 176
           DSA  SA N A A NS FFDGGGEFGGGMG        M+MPPNVYGS+GPRWDGPGF+T
Sbjct: 121 DSAASSAPNSAVAGNSGFFDGGGEFGGGMGMGMGMGMTMAMPPNVYGSDGPRWDGPGFST 180

[Close]

BLAST of ClCG10G004280 vs. ExPASy TrEMBL
Match: A0A1S3BL47 (nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC103491025 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.3e-85
Identity = 166/189 (87.83%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA--SAANPAGATNSTFFDGGGEFGGGMG------------MSMPPNVYGSNGPRWDGP 176
           DSA  SA N A A NS FFDGGGEFGGGMG            M+MPPNVYGS+GPRWDGP
Sbjct: 121 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 180

[Close]

BLAST of ClCG10G004280 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 205.3 bits (521), Expect = 4.0e-53
Identity = 117/191 (61.26%), Postives = 127/191 (66.49%), Query Frame = 0


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMS---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]

BLAST of ClCG10G004280 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-50
Identity = 103/152 (67.76%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R         G    +   G   +GGGM  +M
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of ClCG10G004280 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-41
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK++L R+RE+EG+      
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

Query: 121 RDSASAANPAGATN 134
               S  +  G  +
Sbjct: 121 SGDGSNRDAGGGVS 134

[Close]

BLAST of ClCG10G004280 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 164.5 bits (415), Expect = 7.8e-41
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 19  REHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKT 78
           +E DR LPIANVGRIMKK LPGN KISKDAKETVQECVSEFISFVTGEASDKC  EKRKT
Sbjct: 35  KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94

Query: 79  INGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGER 115
           INGDD++WA+ TLGFEDYV PLK++L ++R+ EGE+
Sbjct: 95  INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]

BLAST of ClCG10G004280 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40
Identity = 88/164 (53.66%), Postives = 104/164 (63.41%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK++L R+RE+EG+      
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDN----- 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRW 164
                              G G+ G G        V G   P W
Sbjct: 121 ------------------KGSGKSGDGSNRDAGGGVSGEEMPSW 141

The following BLAST results are available for this feature:

BLAST of ClCG10G004280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932338.1	5.2e-87	92.22	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata]	[more]
XP_023553390.1	6.8e-87	91.67	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6577523.1	8.9e-87	90.22	Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subs...	[more]
XP_038905070.1	1.3e-85	93.22	nuclear transcription factor Y subunit B-3-like [Benincasa hispida]	[more]
XP_022965194.1	2.2e-85	90.66	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]

BLAST of ClCG10G004280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ3	5.6e-52	61.26	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	1.5e-49	67.76	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	3.8e-48	63.43	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q69J40	2.7e-46	61.27	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
P25209	2.6e-41	57.23	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of ClCG10G004280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1D9	2.5e-87	92.22	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HQB9	1.1e-85	90.66	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L4U4	1.8e-85	91.30	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0478...	[more]
A0A5A7VDK6	4.0e-85	89.73	Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BL47	5.3e-85	87.83	nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of ClCG10G004280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47640.1	4.0e-53	61.26	nuclear factor Y, subunit B2	[more]
AT4G14540.1	1.1e-50	67.76	nuclear factor Y, subunit B3	[more]
AT2G38880.3	2.7e-41	61.19	nuclear factor Y, subunit B1	[more]
AT2G13570.1	7.8e-41	79.17	nuclear factor Y, subunit B7	[more]
AT2G38880.2	1.3e-40	53.66	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 52.03 coord: 71..89 score: 39.11 coord: 90..108 score: 36.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..175
None	No IPR available	PANTHER	PTHR11064:SF129	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	coord: 1..149
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..135 e-value: 3.3E-44 score: 152.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..123
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 e-value: 1.8E-27 score: 95.4
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..149
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004280.1	ClCG10G004280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding