ClCG10G004260 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G004260
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 5447498 .. 5447779 (-)
RNA-Seq Expression	ClCG10G004260
Synteny	ClCG10G004260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCCACCAAAGTAGTGAAGTTCAGATTCCACATTGCAGTAACCCTAATCCTCTGTTTAACTCTCTTCTCCCTCATCCTTCTCGCTCCAAGATTCCTCTCGCTCCTCGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCGTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTTCCGCCGCCTGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCACGACCACCACCACATCGACGCCTCTCTCAAATCCGATTAA

mRNA sequence

ATGGAGATCCCCACCAAAGTAGTGAAGTTCAGATTCCACATTGCAGTAACCCTAATCCTCTGTTTAACTCTCTTCTCCCTCATCCTTCTCGCTCCAAGATTCCTCTCGCTCCTCGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCGTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTTCCGCCGCCTGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCACGACCACCACCACATCGACGCCTCTCTCAAATCCGATTAA

Coding sequence (CDS)

ATGGAGATCCCCACCAAAGTAGTGAAGTTCAGATTCCACATTGCAGTAACCCTAATCCTCTGTTTAACTCTCTTCTCCCTCATCCTTCTCGCTCCAAGATTCCTCTCGCTCCTCGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCGTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTTCCGCCGCCTGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCACGACCACCACCACATCGACGCCTCTCTCAAATCCGATTAA

Protein sequence

MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFANTSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD

Homology

[Close]

BLAST of ClCG10G004260 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 5.9e-29
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP+KV+KFRFHI VTLIL LTLFSL LLAP FLSLLAYFWPLFLSTA+FLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD 94
          TSLP PDKAAEGLL+YVAGHHD     +SLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLD--SSSLKSD 91

[Close]

BLAST of ClCG10G004260 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 72/93 (77.42%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP+KV KFRFH    L LCLTLFSL+LLAPR LSL+AYFWPL LSTA+FLLAVLLFAN
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD 94
           SLPPPDK  EGLLNYVAGH D   +DASLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD---LDASLKTD 90

[Close]

BLAST of ClCG10G004260 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP+KV +FRFH    L LCLTLFSL+LLAPR LSL+AYFWPL LSTA+FLLAVLLFAN
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD 94
           SLPPPDK  EGLLNYVAGH D   +DASLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD---LDASLKTD 90

[Close]

BLAST of ClCG10G004260 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-26
Identity = 69/84 (82.14%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP KV KFRFHI   LIL L LFSL+LLAP+FLSLLA+FWPL LSTA+FLLAVLLF N
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHH 85
          TSLP PDKAAEGLLNYVAGH DHH
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHH 84

[Close]

BLAST of ClCG10G004260 vs. NCBI nr
Match: PON94035.1 (hypothetical protein TorRG33x02_100740 [Trema orientale])

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-20
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K+V+F+FHI + LILC+ + +L+L+APRF+++LAYFWPL LSTA+FL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PDKAAEGLLNYVAG--------HHDHHH 86
          TS PP  DKA EGLL+YVAG        HHDHHH
Sbjct: 61 TSPPPAADKAGEGLLDYVAGQPDDHHHHHHDHHH 94

[Close]

BLAST of ClCG10G004260 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP+KV+KFRFHI VTLIL LTLFSL LLAP FLSLLAYFWPLFLSTA+FLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD 94
          TSLP PDKAAEGLL+YVAGHHD     +SLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLD--SSSLKSD 91

[Close]

BLAST of ClCG10G004260 vs. ExPASy TrEMBL
Match: A0A2P5F8A8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100740 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K+V+F+FHI + LILC+ + +L+L+APRF+++LAYFWPL LSTA+FL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PDKAAEGLLNYVAG--------HHDHHH 86
          TS PP  DKA EGLL+YVAG        HHDHHH
Sbjct: 61 TSPPPAADKAGEGLLDYVAGQPDDHHHHHHDHHH 94

[Close]

BLAST of ClCG10G004260 vs. ExPASy TrEMBL
Match: A0A2P5AA24 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_353270 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.5e-19
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K+V+F+FHI + +ILC+ + +L+L+A RF+++LAYFWPL LSTA+FL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIAIILCIVVSTLVLVATRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PDKAAEGLLNYVAG--------HHDHHHID 88
          TS PP  DKA EGLL+YVAG        HH HHH++
Sbjct: 61 TSTPPAADKAGEGLLDYVAGQPDDDDHRHHHHHHVE 96

[Close]

BLAST of ClCG10G004260 vs. ExPASy TrEMBL
Match: A0A371EZD3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP KV+KFRFH    L+ CLTLFSLIL+APRF++LLAYFWPLFLSTAV L  V  FA 
Sbjct: 1  MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60

Query: 61 TS-LPPPD-----KAAEGLLNYVAGHHDHHHIDASLKSD 94
          TS LP  D      A +GLL+YVAGHHD   +D   KSD
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHD-LPLDTRRKSD 98

[Close]

BLAST of ClCG10G004260 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K++KF+FH    LILCLTL+++ L+APRFL++LAYFWPLFLSTA+FL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDH 84
          T+LP  + + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of ClCG10G004260 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1   MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
           MEI  K++++RFH  VT+++ + + SL+  APR L++LAYFWPLF STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPPPDKAAEGLLNYVAGHHDHHH 86
                 +   E L++YVAG  +  H
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSH 206

[Close]

BLAST of ClCG10G004260 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 1   MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
           ME   K++KF+  I    +L L   +L+  +P FL++L+YFWPLFLSTA+FL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  TSLPPPDK------------AAEGLLNY-VAGHHDHHHIDASLKSD 94
           TS  P               AAEG+L+Y V G H+    D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

The following BLAST results are available for this feature:

BLAST of ClCG10G004260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56016.1	5.9e-29	83.87	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG7028299.1	3.2e-27	77.42	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596766.1	7.2e-27	76.34	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577526.1	3.6e-26	82.14	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON94035.1	5.0e-20	61.70	hypothetical protein TorRG33x02_100740 [Trema orientale]	[more]

BLAST of ClCG10G004260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G004260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	2.8e-29	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
A0A2P5F8A8	2.4e-20	61.70	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100740 PE=4 SV...	[more]
A0A2P5AA24	3.5e-19	57.29	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_353270 PE...	[more]
A0A371EZD3	7.7e-19	63.64	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 P...	[more]
M5WI68	1.0e-18	61.45	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]

BLAST of ClCG10G004260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	2.6e-11	42.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	1.3e-10	41.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..87
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004260.1	ClCG10G004260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane