ClCG10G003900 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G003900
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	serine-rich protein-related
Location	CG_Chr10: 4895548 .. 4895853 (+)
RNA-Seq Expression	ClCG10G003900
Synteny	ClCG10G003900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATCAGAGCAGAGCCGAAACAAACGAAGACGAATTGCAAGACACCGACCTCGAAATCCGCGGTGGCGGAATCGGAACTCGACGATCTGAAGAAGACTGCGCATATGCTAATGTCTCCGACGGCGTTGTCGAGGATGACGAAGTCGCCGAGCGTTAAATTGAATTGCCTCTGTTCTCCGACCACTCACATTGGATCTTTCCGGTGCCGACGCCACCGGAGCGCCGCTATCTCCCGCGGCGGTTCCGTCGGCTCCAATCTCTCCGATCTGGCTCAGAAATCAGGGGCGATGGACGATTAA

mRNA sequence

ATGGATTCAATCAGAGCAGAGCCGAAACAAACGAAGACGAATTGCAAGACACCGACCTCGAAATCCGCGGTGGCGGAATCGGAACTCGACGATCTGAAGAAGACTGCGCATATGCTAATGTCTCCGACGGCGTTGTCGAGGATGACGAAGTCGCCGAGCGTTAAATTGAATTGCCTCTGTTCTCCGACCACTCACATTGGATCTTTCCGGTGCCGACGCCACCGGAGCGCCGCTATCTCCCGCGGCGGTTCCGTCGGCTCCAATCTCTCCGATCTGGCTCAGAAATCAGGGGCGATGGACGATTAA

Coding sequence (CDS)

ATGGATTCAATCAGAGCAGAGCCGAAACAAACGAAGACGAATTGCAAGACACCGACCTCGAAATCCGCGGTGGCGGAATCGGAACTCGACGATCTGAAGAAGACTGCGCATATGCTAATGTCTCCGACGGCGTTGTCGAGGATGACGAAGTCGCCGAGCGTTAAATTGAATTGCCTCTGTTCTCCGACCACTCACATTGGATCTTTCCGGTGCCGACGCCACCGGAGCGCCGCTATCTCCCGCGGCGGTTCCGTCGGCTCCAATCTCTCCGATCTGGCTCAGAAATCAGGGGCGATGGACGATTAA

Protein sequence

MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD

Homology

[Close]

BLAST of ClCG10G003900 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_011649 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.3e-37
Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           MD IR +PKQTKTNCKTPTSKSA+ E+E DDLKK A++LMSPTALSRMTKS S+K NCLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTHIGSFRCRRHRS +ISRGGSVGSNLSDL QKS AM+D
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of ClCG10G003900 vs. NCBI nr
Match: TYK19387.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           MD IR + KQTKTNCKTPTSKSA+ E+E DDLKK AH+LMSPTALSRMTKSPS+K NCLC
Sbjct: 1   MDPIRTDSKQTKTNCKTPTSKSAMVETEFDDLKKNAHLLMSPTALSRMTKSPSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTHIGSFRCRRHRS A+SRG SVGSNLSDL QKS  M+D
Sbjct: 61  SPTTHIGSFRCRRHRSTAMSRGASVGSNLSDLGQKSETMED 101

[Close]

BLAST of ClCG10G003900 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 80/102 (78.43%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAH-MLMSPTALSRMTKSPSVKLNCL 60
           MD + AEPKQ K NCKTPT+KSA+ E +LD+LKK++H ++MSPTALSRM+KSPS K NCL
Sbjct: 1   MDHVGAEPKQPKMNCKTPTAKSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCL 60

Query: 61  CSPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           CSPTTHIGSFRCRRHRS AISRGGSVGSNLSDLAQKS AM+D
Sbjct: 61  CSPTTHIGSFRCRRHRSTAISRGGSVGSNLSDLAQKSAAMED 102

[Close]

BLAST of ClCG10G003900 vs. NCBI nr
Match: KAG7015599.1 (hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           M+ I AEPKQ  TNC +PTSKSA  E ELDD KK A          +MT+SPS +  CLC
Sbjct: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTH+GSFRCR HR  AISRGGS GSNLSDLAQKS A++D
Sbjct: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 91

[Close]

BLAST of ClCG10G003900 vs. NCBI nr
Match: KAG6577543.1 (hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           M+ I AEPKQ  TNC +PTSKSA  E ELDD KK A          +MT+SPS +  CLC
Sbjct: 1   MEPIIAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTH+GSFRCR HR  AISRGGS GSNLSDLAQKS A++D
Sbjct: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 91

[Close]

BLAST of ClCG10G003900 vs. ExPASy TrEMBL
Match: A0A0A0L7C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.1e-37
Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           MD IR +PKQTKTNCKTPTSKSA+ E+E DDLKK A++LMSPTALSRMTKS S+K NCLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTHIGSFRCRRHRS +ISRGGSVGSNLSDL QKS AM+D
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of ClCG10G003900 vs. ExPASy TrEMBL
Match: A0A5D3D753 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00180 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.2e-37
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLC 60
           MD IR + KQTKTNCKTPTSKSA+ E+E DDLKK AH+LMSPTALSRMTKSPS+K NCLC
Sbjct: 1   MDPIRTDSKQTKTNCKTPTSKSAMVETEFDDLKKNAHLLMSPTALSRMTKSPSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SPTTHIGSFRCRRHRS A+SRG SVGSNLSDL QKS  M+D
Sbjct: 61  SPTTHIGSFRCRRHRSTAMSRGASVGSNLSDLGQKSETMED 101

[Close]

BLAST of ClCG10G003900 vs. ExPASy TrEMBL
Match: A0A6J1CNY2 (uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013367 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 80/102 (78.43%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDSIRAEPKQTKTNCKTPTSKSAVAESELDDLKKTAH-MLMSPTALSRMTKSPSVKLNCL 60
           MD + AEPKQ K NCKTPT+KSA+ E +LD+LKK++H ++MSPTALSRM+KSPS K NCL
Sbjct: 1   MDHVGAEPKQPKMNCKTPTAKSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCL 60

Query: 61  CSPTTHIGSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           CSPTTHIGSFRCRRHRS AISRGGSVGSNLSDLAQKS AM+D
Sbjct: 61  CSPTTHIGSFRCRRHRSTAISRGGSVGSNLSDLAQKSAAMED 102

[Close]

BLAST of ClCG10G003900 vs. ExPASy TrEMBL
Match: A0A5N6L3X1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 7   EPKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHI 66
           E K  K N K    K  + E  LDD+KK  H+L+SP+      K      NCLCSPTTH+
Sbjct: 5   EQKPPKINLKPVNPKINIPEINLDDIKKHPHLLVSPSLKETKAKQSGRWKNCLCSPTTHV 64

Query: 67  GSFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           GSFRCR HR++++ RGGSVGS LS+LA KSGA+ D
Sbjct: 65  GSFRCRHHRNSSMHRGGSVGSKLSELAHKSGAVSD 99

[Close]

BLAST of ClCG10G003900 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 8   PKQTKTNCKTPTSKSAVAESELDDLKKTAHMLMSPTALSRMTKSPSVKLNCLCSPTTHIG 67
           P++ K N      K  + +  L++LKK  H+L SP A   +TKS S + NCLCSPTTH G
Sbjct: 10  PQKIKEN--NMNFKLKIPDINLNELKKQTHLLASPRAQRAVTKSSSTRWNCLCSPTTHAG 69

Query: 68  SFRCRRHRSAAISRGGSVGSNLSDLAQKSGAMDD 102
           SFRCR HRS+ + RGGSVGSNLS+LA+K GA+ D
Sbjct: 70  SFRCRHHRSSCMLRGGSVGSNLSELARKPGAISD 101

[Close]

BLAST of ClCG10G003900 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-10
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 47  RMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNLSD-LAQKSGAMDD 102
           R +   S +LNCLCSPTTH GSFRCR HR  +++R GS+GSNL+  L+ KS    D
Sbjct: 53  RSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVLLSSKSSRFSD 108

[Close]

BLAST of ClCG10G003900 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 41/85 (48.24%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 21  KSAVAESELDDLKKTAHMLMSPTALS---------RMTKSPSVKLNCLCSPTTHIGSFRC 80
           K   A+   DD+K+     MSP              M+KS SV+ NCLC+PTTH GSFRC
Sbjct: 19  KETEADVSQDDIKRQEAYNMSPRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRC 78

Query: 81  RRHRSAA---ISRGGSVGSNLSDLA 94
           R HR  A   +SRG SV SNLS LA
Sbjct: 79  RYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of ClCG10G003900 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 45 LSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSV 86
          LSR T     K NCLCSPTTH GSFRCR HRS ++ R  S+
Sbjct: 33 LSRQTS--MTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]

BLAST of ClCG10G003900 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 45 LSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSV 86
          LSR T     K NCLCSPTTH GSFRCR HRS ++ R  S+
Sbjct: 33 LSRQTS--MTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

[Close]

BLAST of ClCG10G003900 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-05
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 45 LSRMTKSPSVKLNCLCSPTTHIGSFRCRRHRSAAISRGGSVGSNL 90
          LSR T     K  C+CSPTTH GSF+C+ HR+ ++ R  SV +N+
Sbjct: 21 LSRQTS--ITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

The following BLAST results are available for this feature:

BLAST of ClCG10G003900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55991.1	6.3e-37	82.18	hypothetical protein Csa_011649 [Cucumis sativus]	[more]
TYK19387.1	1.1e-36	81.19	putative PGPS/D10 protein [Cucumis melo var. makuwa]	[more]
XP_022143490.1	2.3e-34	78.43	uncharacterized protein LOC111013367 [Momordica charantia]	[more]
KAG7015599.1	1.1e-23	64.36	hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577543.1	1.8e-23	64.36	hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG10G003900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G003900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7C7	3.1e-37	82.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1	[more]
A0A5D3D753	5.2e-37	81.19	Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1CNY2	1.1e-34	78.43	uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5N6L3X1	2.3e-16	52.63	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1	[more]
W9SBP1	2.3e-16	54.26	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]

BLAST of ClCG10G003900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55980.1	3.2e-10	55.36	serine-rich protein-related	[more]
AT3G13227.1	1.2e-09	48.24	serine-rich protein-related	[more]
AT1G67910.1	2.8e-06	60.98	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	2.8e-06	60.98	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G24577.1	5.2e-05	48.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 21..98
None	No IPR available	PANTHER	PTHR33132:SF48	BNACNNG68960D PROTEIN	coord: 21..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G003900.1	ClCG10G003900.1	mRNA