ClCG10G003630 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G003630
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerase
Location	CG_Chr10: 4511768 .. 4528755 (-)
RNA-Seq Expression	ClCG10G003630
Synteny	ClCG10G003630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTGAACGAGCTTCTCATCATAATCCCACGAGAGCAGTTTGCAGAAAGTTTCTTCAAGTGTCAGAATCGTAATAAGGAGTAGCAGCAAGGGTAAAAATTCTGACAACTCGAAAGACCTCTTTTATCGGCCCTGGTTTCGGGCTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGAAAAAAAGAACTGGGAAGAGCTCGGCGACGATACTCAGCTCTTTTTCCCTCTTCTCTTCTTCTTCTACCTTCTTCCCCTTTTCAGAACAACCCCTTTTCCCCATTTTGTTTTTCCCTTTTCCCTGTTCATTCCCCCCTGCTTTTCGTTTACTGTTTCACAGACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTTGTGTGCTTTGGTTTCTGTGAAGCGTTACATTCATCAAGCTCCTGTTTTTCCCCTTACTTTGGAGTATGTTATCACTCTTTACTGTATTTGGATTTCTGGGTTGGAATGAGGTTTTTCCATGCATGTCTAAAATGTGTGATCTTTGCTTTTTTAAGACTGCATTGCATTTGGGTTTTCTGGGTTTTGTTGGTTTTTGGGATCATTGGGAATGGTGAATGTAATGGGTGTTTTGATGAAGTTTTTTTTTTTTTTTTGTTTGGAAGATCAACTTTGATGGCTATATAGCATGTTGATCATGGAGTTTTGAGGTTTCTTAAGAGGAGCTTTAGGTGGTGGTCTTGCCCCAATTGTTAAAATTTGCCTATTAACGTGTTTAGCTCGTAGAGCTAATGAAAGCAGAAGATTTATTTGACTGTTAAAGCATTCTTGATTCTGATTATGTTTCTTAATACATCAACATTCTACAAAGGGAAGGGCTTTGTTTGATTCTGTGATATCATGTTGTGTTGCTGATGTATGGATGCTTGTTTTCTGCTGATTATGTGCAAAATCAGTGCATGGCGCTTTAGTACTTTCTGCTGAGTTAGCAAGTTGATTTATGTAGAAATTGTTTGTTCTCATGCATTTTTTCTATTTGAAATTTTAAAGGATGAGGCAAAGTTACAATAATTGAAGGCATAGCAGCTTGTCCTGACACATGGCGTACTGATCTATTAATCTTTCTGTTGAAGATAACTACTTATATCAAGGAGTTGCCTAATAGACATAGCTATTTATAGCATTAAATCATTTTGTGTCAATATTTTCATTTATAATCAATTGATAATTATGTGTATTGAATGAATGAGAATGCGTTTTTGCTGCATTATAAAGTTGGACAAAAGTCACATGCATTTTTGTGTCCCTTCAACTTCTGGTCTTCTTATTTCGGGGCATTTCATCATGTACAAAAAGTTTGGGGCACTAGAGCAATTGCTTTTTCAGTTCATAAGGAAGAATGAATATGTCAGTGATCTATCTTATCAAATTCATTGGACTTCCCCAATCTGTTGAACTAAATGTGCTACCGTACTTCATCCACTTCTGTACACTGTAATGGTAGTTTTACTCATGCTGCTTAGTTTGTGAGCCACACATTTATTTTACTAGTGCGGAATGCCATTGCCAATTTTACCCAGGTCTTTTCTCTGCAATGTGTCCGAATAACTTGATCTTAACTTATTGTTAGTTGACTTTGTTCAATGGACATATGTTTTCTGTTACTTATTTAGTATTTGATAATTTCATTTACGGTTTTGTGATTTATGAATCACATGTTTATGGTAAATGGCAATGCTAATTTCACAACGTAAGAATCCATGCTCAATAAATGTGAATGCTGTGTGTGAGTTAGAGATAATGCCAAATATTTATTCTCTTTTCTTCATTAATGAAGATTTCCCCTTTCCTTTTCAAAAAGAAAAAAAAAATTGTGATATGCCAAAATTAGAAGCAATGTTTGTTCTTGATACATATTACACAGATACTATTAGTATGTCAATTTTTTCACTCATAGTTTTCTGGCTTATTGTAGTGAACTGTAAAAGCTTCAAAGATTTTGACATTCCATCATGAATATGAATTTGTTGTCCCATTTATTTCTCCAGGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTATGAGTTCTGCTGGAGACTTTCGGCCAGGCCAGAAGGTATAATTTTCAGGACGATATTGCAGTTTAGTCTTGAACCTGGTTCTAGAGTTGAATCATCCCTTTAACTTGTATTGTATTTAGCAACTCATTATCTATTTCTCTCGTTTAAATTTTCCACTTATGTCCCTTTTTACTAGAAGCTTCTAGAGTGTTAAGTCATTACCTTAGGCTAGTAGTACTAGTCTCTGCTTGTCTTTAGCATGTCTTAATGCCTTGCTATTCTTACATACTTGCAAAATCTTTGTTAGTTCATCTATTAGATTTTCCCACATCAATTGGTATTCTTCTTCTTGTCTTCTTCTTCTTCTTCTAGTGAAGTCTCAGTTTCAGGAATCTCCATAAAGATCAAGTTTTACTTAGCCTTCCAATATCCCCTTCTTGTCCATATTATTTTCTGTCCTCATAATTGTTTCTTGTCAAATAAAGGATCAAATGCTCTAGAAAAATTTTCATTAAATGTTATTATTGTGACTCTTTCTTTTGGGTTCCCGACCAACATCTCTCGATGCTTTCCTTCATGTTATAGATGCAATTTAGTTTATTTAATTTATTTCAAATGCACTAGGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGTAAGTATTTTAATTCTGATATAGTATCCTCATATACTGCTTTAGGAAGTCAATAATTTTCAAGACAATCAATTGTCAATAAGTGCGAGTGTAGGTTCAAGCCACAATGGACTACTTATCTAGGATTTAATATCCTATGAACTTCCTTGGTAATCAAATGTAGCCGGGTTAGGTGGTTATCTCATAAGAATAGTCAAGGAGCATGCAAGCTTGCCTCAAAACTCACAATGTAAACAAACAAATTATAACAATTCATATTGGTGAAGGGTTCCATCATAATAAGTAATAACCCAAGTTCAAGACTGGTTTGTGAATTTTAATGGTAAAGGAGTTTAATTGCAATAATTTCATAAGTGGGGGGGCATTGTTCAAATCTATAAAACTCATGGTGTGATTACTCTATATTGGAAGGTGAACCTTTTTTTTTCTTCTTCCTCTTTTTCCCTGACATTTATCTTAATTTTTATTCCATGTGCTTTTGTTTGTAAAGTAAGGCAATTTTTTTTTTTCTATAAAAATTGTTGTTGGATAAAAAACCAAAGGTGCCTTAAACTTGTGAGTTTATACGTGCCTTTAATTTTGTATGGTGTCATGTTCATTACATACAGGATTTTATTTTTGATATTCTGATGTGAAAAGAAACTTTATCGATGTAACAGGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGTAATTAACTAGTAACGTTACAAAGATGTTAACTTGTTAAATTTTCTCACACATGTGTTCTAACATTTTTGTTTGAATGGTTTTGGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTCAGGTACCTCACTTATTGTGATGAACCTTGAATTATTGTAATTAATTTAAAAGTTATGGCTTTCTGCTATTAAACAACGCAGTTATCTTGCCCATGTGGATATGTAGATAATTCTCGTTAAAAAATGTCTTTTCTTTTTTCCATCCATGTTCTGAGGAAAATGCTTTGAATTCTGATTCAATTGAAGAAAGATGTACAGGGGTTTTAGTACCCTCCGTCAGAATGTGCCTTACCACTCTCCCCACCCCACCCACTTATCTTACCCCTCCACAACCAGTTTGTCTTCACTCCTTTGGATCCAACTTTAGGTTTAACAAGAGGAGTTATTCACTCGATAAAGGACTCTCCACCTCATGGTGACCTCTTTGAGGTTGACTACGAGGTAAGTTTGAGTTGTATGGAATCAGTCATTTAGCCTGTGGATTTCAGTATGGAGTTTGATGTTGTTGAAGATTCTTTATCTGAAGCTTTTGACTTACTATTTTGGGATTGTGACAAGAGGACTCCTCCTCCTATTCCTTCATCCATGCCGGCCAAATTTGCTTCGCTGATGGAAGCTTGTGGTTTTGAGTTTTGTGAAATTCCTCCTTTCTCTCGAGAAAGAAGGCATGTCATGGTTTAGCTTTGCGAAGTTTTGTTTTTCTTTCATCTCTTAGACGTTTGGATTGACTTGCATGAGGAGATTTTTTATTTCTTTGCTGGGGATGGTTCTTCCAAAGCTTCTTTCAATGGGTTAAAGTTGTTGCAGAGGTGAAGAGTTTTTCCAGAAATGGTTTGAACTTTGGGAGTTCGATGGTATCCATCTATTTGGTATTGAGAAGCTTTATGATTTCGTTGCAACAGGTTTCTTTATGATTGGTTATAAAAGGTTTTTTTTGGTTGGTTGGTAGTTGTTTCTTGGTTTTCTAGAAGAATTGAAGTAGCTATCAGTTTTCAGTGTTTGTTGGAGGCCTTACTTATAGTTTCATCGTTCATTCACAAGCTCCCTTAGTCTTACAGTCAAAGATTTTGGAAAAGTTCTTGGTTCTTTAAATGTTTATTTATTTTCTGGCCAATCTCTATAAGATTGTATTTGCTGTTTGTATTATTTCTTTTTCACTCCCGTTGGGAGTTTGTATCCCTGAACTCTTCTTCCTTTTCATTATATCAACGAGAAGTTGTTTCTTGTAAAAGAAAACATAATAAACAAACAAATAAATCAAAGGTATAATAGCGTGTTTAGAAGTGTTTCTAAGGGTATACTTGCATTTTTTTCTTCTTGCGCTTTTGAGTGGAAAAAACTGACCGCTTCTTCTAAAAGCACCCATGTCTCGTATGTAGCTGAATGCCATGAAAAATCAAAACACCTTTTTCAATTCATGAAAACCATGGGGTGGGTGGGTGGTTGATAGAAAAGGAATGGAGAAAAAAAAAAAAATAGAAACCAAGTGACTTATATTTATTCTTCCAAATGCCGGAGTTACCAAAAATCTAAACGAACTTTTCATTGATGTATTAAAAGATCAAAAAATTTTCTAAGATACAACAAACTCCTAAGTGGGGAGTAAAAAGGAAATAAAACAACCACATAAAGAACAAAAATCCAAATATTACGATAGTCTAGAAATAAAACGTTGAAGAACAAAGCACCAAAGATCTTGAAACCTCAAAGCCAAAGCCAAGAGGAATTTCAAAAGCACTATCCCATGAATGAAACCTCAAAGCCAAGATGAATTTGCAAAAGAGGCTCCTAACTCCCTACAAAGCTCCTGAACACTCAGGTGACTAGAGGAAGGAGCAGCCTACTTTGAACCTTCTTTGGAACATCTTTGGCAGAAGGCAAAAGGAGAAGGCTCCATTAAGAACTCCCCATAAGAATTAGCAACCCAAGAAGCAGTTATCCACAAAATTTAGACTTTAAATGAAATCGTAGACTGACAACACCAAGATATCTGGCCCATCTCTTGGAAAAAGACATTCGTTAGACTTGATCTGATGTGCTCATTTCTATGAAATTCTTTGAAAGGTCTCATAAATACAGCCTCAAGTTTTAAAGATGCCATGAGTTAACAAAGAATTCAATATTAAAACCATCAAGTCACAAGATCCATGCCTTATTAGCAGCTGAAAGAAAGCTAAGTTCTTTTTTTTTTAAATCATCATCACTATGAAAAAAAAGCTAAGCTCTTCAGTGAGTTTGAATTTCTTTTTTTGAAAAGGAAACATCATTTTTTCATTCATCTACTGAAGAGGATGAATGATTAGCTTGAATATATGTCGAGTTGGTTGAATAGTAAGTCTCCATGCCGAGAAGTGAGCTGAGAAGTGAGAACTATTCTTATAATAGTTTCCTCTTGGCACACTTTATCTACACCCATTTGTAGTTTCTCCAATCTTCCCCCTTTATTTCTAATGGAGAGAGTCTTTTGTAGCTTGATTTGCTTGGCAGTGCATCTTTCCCACAGTCCCATTCTTAATTTATGTCTCTTCAATTGATGGAAATTTGTTTCTTATCAGGAAGGGGGAAAAAAAAAAAAAAAGAAAAGAAAAAAGAAAAAAGAAAAAAAGATGTCATTGTGCCATTGGAATTCCACCCTTTGATATTTTTATCTGGGTTGGTTCAATATGGGACTAACCATGGTCACATATATAACTGCCTGGTGGTGGTGGTGGTAGCTTCTGCATTTTTTTTCTTAATCTAATCTAAGATTTATTTTTAAATTTGTATTTTGGTTCTCTTTACATGTACCAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGTAAGTTCATTTAGCACACATTGTTTTATTTCTGTCTTAACTGTTTATCATTTCAAAACTGTTCTTGTGAAAAAGTTTTATTTGAAACCATGCTTTATATGGTGAACAGGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTATTGGGCCTCTTTATGCATCTGAGTCCTGACTAGATTTAGTTTATTCAATGTTTTCATCTGCGGAAATTTCCATTGTTTTCTCAATTTGTTGTCCTAATCGTCAGAAACCATTGTATTTCTTGATCACTGAACCCCATGAAACCCTGATTTGTTTAGTGATGTGATTAGTATGTTCTCTTTTCTTACTAAAGAAAAAAAGACAAGAAAAAAGAAATTCAAATCAGGAACCAGAGAGAGAGAGTGAGAGAGAAAGAGATGTGTCAAAATTATAAATGCATAAGCTCAACGACTTTAAAGATTATAAAAATAATAGATGTCCTAGTCTTTTACTTCATTGGACCCCTTTTCTAAAATGGGTGTTTTGTGGGCTTGATTTTTTATTTATTTATTTTTTAATGCCCTTGGGTGGCCTTTCATTTTTTTCAATGTAGTTATTTCAAAAAAAAAAAAAATAAATAAATAAATAAAATGTCCTGCCATCTAGTTCATGTCGTGTTGTGCTATTCTTGAATTTTTGTTGTTGTGCTTCTTATGTCTTAGGTCTTTTTTATCATTATCGTTATTTTAGTTTAAACTGTTCCCTTAGTATAATAATCTCAATCCCATCTTTAATTTATTGCTAAGAATAAGTGTTACCCCTAATTCTGACCCTAAGAAACTCTATGATGCTGATATTTGTATTAGTGCTTTCACTTTCAATTTTACCATTAGCATGTTGCGGTTTTTAGTAGGTTTTCTATTTTTTTATTATTTTTTAAATATATATTATAACTTTGAAAAAGAGTAAGTGGATGAACTAAAAAAAGAAAGTGAAAGTGGACGAACTTTGCAGTCTTGAAAACCTTGAACAAATTGGAGAGTTTAACGAATATTATAAACTAGTGGAGTTTGTTGTCTGTAATGTGTTGCTCTAGTCACTACTGATGCATTTCAAAATTAACTTGGCTTCAATTTTATAATTTTGAGGTATCTTTGTCATTCATACCTTACCCATTTCATTCTGGCTACTGCAAATCTTTTGCATTATTGTAAACCTGTAATATTTTCCTTCCCTATAATGATACAATATTTAAGTGATACGTTTTTCTTGGATTTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTGTAAGACTTTTCTTCTTACTGCCCTGTTGTTAGGTTGATGACTGACGCTATTCAAATGGAAGGGTGTTTGAATGACATTTGGCTCTTTCTAACGTGTTGCTTTTAAACATGTTTGATTTAAGGATGAAAGGACCAGGGCTTACAAGAAAGTGGTTGATTTCAGAGGGACAGCTAACGAGTTAGGTTCTCGCGTTCTCGATTGTCTCAAAATTTCGAAGGCAATTTACAATATCCTTTTCTTTTGCCTTAATCATGTTAATTATTATGTGAAACTTTTGCTCTTGCTTATATTGTCACTTCTTCTATGCAGCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGCACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGGTACAATAGCCTTCTCCTCTCAATGTAACAATTTAAGTCAAGGATTTGGTAAATATATATATTATTTTTATTATTCTATTATCTGTTTGTTGAATCACCAATTAACTGATGGGTTTTGATAGAATAAATCTTATATTCAAAGACTCTTGGAATGGCATTTATCAATAACCACATGTTGGGCATTATGGAAATTTTAAGTCCACAAGTGTGGAAGAGTGTTAAAGTTTCAACATAAAATAATTAAATTTAACAGTAGCCCTTAAACTTAAGCCTTTGGGTTTAGTGTTGATTTAACCATTTGCAAAGTATTTTTATGTTTTTTGCTACATGCTATATATTTGAAAACAATTTTTAAAACTCATCTTACCCAATGAGTTTTCTACCTTAAGAAACCTTTTTTTTTTTTTTTTTTAAATGGTTGAAAAGTTCTCTAGTATTTAGAAAAAATACTAGAAAACTTTTCAAGCATAACTTCTAAACAGGTCTCTAGTTTCTGATACCAAGACTAATGGTTGTGATATATTTGGCTTATGCAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATGTAAGTTATATATTTTCAATGCTTTTTATATTTGTTGTCAGCTGTGTTTATAGTATCTTTTGATTGACATTATTAGCGATGTTTTCTATGGATATTAGCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGTAATGCAATCTGGAACCTGTCTTTCTTTATATGACGCAAGTGTATACTGTTAGTGTCCTCTGTATCTGGTATCAACTATAATTTATCCATCCAGGAAATTTTGAAGAAAAGAAGGTTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGTACGTTCCTTCTTCAATTGACATTTAGAGTTGGTTCCCTTTCACTAAATATTCTCTATTTGGGCTTTTCTATCAAAGCAAGTTAACTTTTGTAATCTCACTTGAGCTGTATGTCGTTTTGTGGCTTGGCTGATAAGGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGTCCGTACTGTTTGTTACCTTGCAATAATTAATGTGCATTTCCACACACACATGGCCAGTCTGAATAGCTGATGTTTTGACTTGATAATATTTCATTATCTAAACTTATCATTGGCGTTTGTCTTTTCTTNAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGTCTGTACTGTTTGTTACCTTGCAATAATTAATGTGCATTTCCACACACACATGGCCAGTCTGAATAGCTGATGTTTTGACTTGATAATATTTCATTATCTAAACTTTTCATTGGCGTTTGTCTTTTCTCGAATTTAGAGCTGAAGTCGCTATGTGTTAAAAATGTCTTCATTGATTCGTTTTTTTTAACATTTTCCATAGATTATTGGGTATAATTGGTGTGCTTTAGTTCTGGGCACCTGGGTCATTCTATTTGTATAATCTGTAAGGTAGGAGTGACCGAAGCTGTAGGGGAGTAGAATTTTGGGAAAAAAGGGCTTTATTTTGAGAAGGCCTAAGACAAGGTTGATTGGTCACATGAATTGAGCTTTAATGGAGAATGTGGAAGAGTGTTTTCTTCTTCAAAATTACTCTTTATCATGCCATTCCTGAGTGTGCCCAGCTGGAAGGGTTTTTATTTATTTATTTTATTTTTTTATAATTCATGTCTGTCCTTTTCGTTGCCCCCTTGTTAGCTTTTTGTGCATTCTTTTTGTGAAAATTATTCGTTTTCTTTTATTGAAGTTATAAAGAGAAAACATATAATGTAATATGCCTTACATTTGACGAGATTTAAATGATATTTTCATTAAAATTGCTATGTTTCTCTTGATTTCTCGCTGTTTCAACTGGCATAACCTTTTTGAAATACCAAGGGACTTTGTAAGATGGTCCGGCATTTGCTTGAGTAAGTTTGTTATTTGGCTAGATTTACCAAAAACTTATGTTTTCTTTTCCTTTGGTATTTGCATTAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCATTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAATGTGTGTATTTCTGTCCATTACCTTTCTGACAAGTTCGGCTTTGGTTCTTGCATCAGGAACTTTTGCATGCTTCTAATCTAACCATTCAAATATTTTAATGCAGAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGGTTAGTTATCTACTTGCTTATCTCATTTGAATCATCATAGTGAGCAAGCAGTGAATTTAAATTTAATCCATGGTTGGTTTTCTGCAGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGTGAGATTATATGTTCCGACTTCATATTCAAAAACAAAATGTTTCAGCTCATAGATGCTTAAGACAAAAAAAATGTTTTTATGGGATTTCAGAAGTATTCCTTTGTTTTTTTATTAGGTAACAATTTCATTGATGTTGTGTGCGTGCAATCTTTTGAATTATATCTGTTATTTGGAATACGGTTTAAGCTAATGAGTTTTCAAACGTGTGGTAAATGAATTCACGATAATCCTAAGATGTTTGTCTTCTAATAATAAAAATGTTCCTATTTCATAGATGTGAGGATTTCTTCTCCTGCTAAGATTCCACGTTATAGGCTTTTTGTTCTTATCCTCCTACTGACTCTTGCAGGTCTCTTTAATATTATACGTACATGTATGCATATATATTATATTTAACCATTAGTTTGGTCACATAATTACGGTGCTTCTTGTTCAAGTTTAGCGCGGCATTTTTTTTCTTTTGTTATTGAAATGTTGTTAATGAGTATACATAAAAATATCCAATTTATCCAAAAAAAAAAAAAAAAAGAAAAAAAAATCAAAGTTCAAACCATGAGTGATAATTAAAATGTATACTATATTATCTCATTCTAGATGCATGGAAATTTTCATTTCTACCAGTCTATTTAATGGTCGCTGTGCGTGTTATCTGTTGCTTCAGGTTTTTGCGGTACTTCAGCTATCTAATGGTTTCAAATTGTTCTTACTCTTCAGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTTAGTTCTTCCTCTTTGGGCACTGCTCAGCTCTTACAATTGGCATCATTTCATTAGATGTGTCCTTTTTTCTATTTGGACATTTTATTTTATTTATTATTTCCATTTCGGAAAGAAAATAAGAAAACACCAATCCATGTTCTAGCTTAATGAATAATTGTTTATTGCTTGAAAATCACTTACATAGTATCTCAGATTGTTCCTTTTTAAAATTTCGAATGTTGCTGAAATGCCATATGCAGAATGGAGTCGGAGTTCTAAAAGGTTTCACTTTTGTGTGTAGGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTATTTTCTATAGAAGATGAAACTCTTTTGGCGTATTGCATCTATTCCCCCTCCCTGAACCCCTAAACAGAAATAATATAATAAACAAAGAAAGGAGAAACAAGAACAAGTTTCTTTTGTGATTCATACCTTTTTATCTTCCTTTGCTCTGGGCAATATTCTGCCTTTCATTCTTGTCCAGGTTCCAGCAATTATGGACAGACTTTTCTTTTGAATTTTTTAGTTCGATAATATGTGGGGGTGCGGGGATTCAAACCTTTGATGTGTAGGTCAGCTGTGCATGTTAGTTGAGCTATGCTCAAATTAGTGACTTTTCTAAACAAGGGAGAAAATCCTTGTAGGATGATAGAGATCTGGGAGTTGGAACTTTGCCTGGTGGAAACGGAGCATTTTAGAGTAGTTTAACTAGATGTAAGATCCCATTATTTTCTTGTGCAGCCCGCTATGCAATGTTTATTTTCTTTGGGATCAATATCTAAGGTGCGGCTCAGTGGCAGGCTCAAAAAGGTTAGATAGGCCGGAGCCCAGGAGAAGTCATCTCATTGACTGACTGCCTTTCAGACCGAGAGCTATTAAGCATTGTTTATGTTTACTGGAAGCCCAAGAATTTGTTTGAAGAATAAGCACCACTTTGAGCATATTATTTATTTACTGTACCACGAGGTNTATTTATTTACTGTAGCCACGAGGTCCTATGGTGCCCCGTGAGGGTGACAGTATGCAGTTTCACATCCATATGATGAAGATGAACATGTCTTGAGGCAACTGAATGTTGAGTGCCTAAGAGGAGCAAGTGGACACTTGTTCCTTGTCTCCAATCTTGTGAAGAGTCTCAGCTCCAATCCTACCCCACAGTATTCCATTTTGGCTCTCACTAGCTATTTTCTGGGTCTGTACAAAGAGCATCCCCACAGGGTTTTAACCTCTGACCTTTCATAGAATTGGTTGGCCCAGCTATTAGAACTTGACTTTGGTAACACACTAGGTTGATGTTGAACAAGTATAGAGTTTCATGGCTTCTTATAAGGATGGATTTTAGAATTAAAAAGAGCACAAGTTCTAGTCACCCTTAGCTTAAGTTCCATTGTTTTCGACATAATTGAACCACATGAGATGTTATTACCTTCTCTTTTGCCATACAGTCAAGGTTACAATAAAAAATCTGATTGGATCTGAATGCACTTAAAGTAGAAATATGTAGTAAGAAATTCAACTCTTTCAGCTCTCTGAAAATGGTCTACATCAGACTGGATTCTGCCCCCAACCAGGACTCAGATAGGACTTGGCTTGCAAAAGGAGACGAGATTAGAATAAAGTGCAGTTGGTGAAATAGGTGGTTCACTACATGTCCAAGCATCTGACTAATATCAGTGACCTAAAGGAGAGTGAGGTTCATCGTTCATGCAATGGGTTCTTCAAGTGAGGCAGTAGGGATCCAGTTGGTCAGCTGATGACACTGGGGAAGACAAATTACAGTCACTTCAAAGTAGTACTTTAATTCTTAAATTTCAGATTCTAGCTTCCCTCAGAAGCAGGATCCAGTTGGTCAGCTGATGACACTTGCTGGTGGAGACAAATAACCGTCACTTCAGATGACCACTCAAATTTCAAATTTCTAGCCTCCTTTAGAAGCAATCCCAATGGTCAAGAAACTTCCATGACCCCACTCACTATCATTCTATATAAATCCCCTATGAACTGTAACTTTGAAATCAGAAGCTATTCTCCTGTATCAATGGTAATAGCCTTATTGTGTAGGGAAGGGATCCAATACTTTAAACAACTGACATATGGACTACCAACACGTTCAATGTTTTTATCCTTTCCTCAGTTAATTAGTGTTTTTGTCCTAAACTGTAGCTCAAATTATGTAGTTGATCTTGATGCGGTTATTTTATTTCCTGCTACCTGTTTAATTATTCATGGAATTAATGTAATCATGTCTACCTGCTACCTGGTTGTACTTTTGCAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGT

mRNA sequence

ATGAAGGCTGAACGAGCTTCTCATCATAATCCCACGAGAGCAGTTTGCAGAAAGTTTCTTCAAGTAATCGTAATAAGGAGTAGCAGCAAGGGTAAAAATTCTGACAACTCGAAAGACCTCTTTTATCGGCCCTGGTTTCGGGCTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGAAAAAAAGAACTGGGAAGAGCTCGGCGACGATACTCAGCTCTTTTTCCCTCTTCTCTTCTTCTTCTACCTTCTTCCCCTTTTCAGAACAACCCCTTTTCCCCATTTTGTTTTTCCCTTTTCCCTGTTCATTCCCCCCTGCTTTTCGTTTACTGTTTCACAGACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGCACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGAAATTTTGAAGAAAAGAAGGTTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCATTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAATAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGT

Coding sequence (CDS)

ATGAAGGCTGAACGAGCTTCTCATCATAATCCCACGAGAGCAGTTTGCAGAAAGTTTCTTCAAGTAATCGTAATAAGGAGTAGCAGCAAGGGTAAAAATTCTGACAACTCGAAAGACCTCTTTTATCGGCCCTGGTTTCGGGCTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGAAAAAAAGAACTGGGAAGAGCTCGGCGACGATACTCAGCTCTTTTTCCCTCTTCTCTTCTTCTTCTACCTTCTTCCCCTTTTCAGAACAACCCCTTTTCCCCATTTTGTTTTTCCCTTTTCCCTGTTCATTCCCCCCTGCTTTTCGTTTACTGTTTCACAGACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGCACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGAAATTTTGAAGAAAAGAAGGTTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCATTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAATAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGT

Protein sequence

MKAERASHHNPTRAVCRKFLQVIVIRSSSKGKNSDNSKDLFYRPWFRAHSIPRTRRLASGWWEKKNWEELGDDTQLFFPLLFFFYLLPLFRTTPFPHFVFPFSLFIPPCFSFTVSQTSPFGRARNFKKFRFWGGELAWVGEEVVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKG

Homology

[Close]

BLAST of ClCG10G003630 vs. NCBI nr
Match: XP_038905038.1 (DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905039.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905040.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905041.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 2793.8 bits (7241), Expect = 0.0e+00
Identity = 1380/1466 (94.13%), Postives = 1410/1466 (96.18%), Query Frame = 0


Query: 141  EEVVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNP 200
            E+ VMIHM+DEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA+SEVSDPKLGLPNP
Sbjct: 10   EQKVMIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVSDPKLGLPNP 69

Query: 201  SYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVE 260
            SYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVE
Sbjct: 70   SYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVE 129

Query: 261  DPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKG 320
            DPTS+YHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQK+VAKG
Sbjct: 130  DPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKKVAKG 189

Query: 321  GLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSF 380
            GLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA DSLFLNSF
Sbjct: 190  GLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSF 249

Query: 381  PVTPNSHRVTEMTHSFSNGQRLIF--------------------------------LSPE 440
            PVTPNSHRVTE+THSFSNGQRLIF                                LSPE
Sbjct: 250  PVTPNSHRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLKISKLSPE 309

Query: 441  KLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCH 500
            KLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCH
Sbjct: 310  KLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCH 369

Query: 501  VAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPL 560
            VAERLQISEHLSSWNMKKLSTSCYL+LV KGEIFVRREGRLVRVRNVLELNMGDTIYRPL
Sbjct: 370  VAERLQISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMGDTIYRPL 429

Query: 561  ADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSL 620
            ADGDVVLVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSL
Sbjct: 430  ADGDVVLVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSL 489

Query: 621  EARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALH 680
            EARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLN FQMQQLQMLALH
Sbjct: 490  EARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQLQMLALH 549

Query: 681  QLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDS 740
            QLLPPAI+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH V I+NGELISSEGSYWLRDS
Sbjct: 550  QLLPPAIVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEGSYWLRDS 609

Query: 741  GRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIF 800
            GRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIF
Sbjct: 610  GRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIF 669

Query: 801  CGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAF 860
            CGLQEAEETCNLKQLMVD+HKDILT +DEDNQH+LSI ++RL YEKQKS ALNQASVDAF
Sbjct: 670  CGLQEAEETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALNQASVDAF 729

Query: 861  KKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKL 920
            KKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LSFSLPHKL
Sbjct: 730  KKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLSFSLPHKL 789

Query: 921  TCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDN 980
            +CSAWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDN
Sbjct: 790  SCSAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDN 849

Query: 981  AEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDH 1040
            AEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTS+SNELDSENNN+D 
Sbjct: 850  AEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNKDR 909

Query: 1041 DIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLS 1100
            DIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLS
Sbjct: 910  DIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLS 969

Query: 1101 EKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEI 1160
            EKLSKRSYGFEYGALGVKNHLERVMFKDIVS VMIIFSPQPSRKKHFSPWVCHFHVCKEI
Sbjct: 970  EKLSKRSYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCHFHVCKEI 1029

Query: 1161 LKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIA 1220
            LKKRRLKMNSVIHSLN+RCDSVRQEGRMNLPSLQII+QDCPLADS+REDGDTVCLTVTIA
Sbjct: 1030 LKKRRLKMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTVCLTVTIA 1089

Query: 1221 ENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVT 1280
            ENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK  CNHGELYLRVT
Sbjct: 1090 ENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVT 1149

Query: 1281 MSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD 1340
            MSGEGNSRFWATL+NNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSL SATLD
Sbjct: 1150 MSGEGNSRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLVSATLD 1209

Query: 1341 IGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAA 1400
            IGKTIRLEHLLL+ANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAA
Sbjct: 1210 IGKTIRLEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAA 1269

Query: 1401 KAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQN 1460
            KAG KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQS CEKQN
Sbjct: 1270 KAGSKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSTCEKQN 1329

Query: 1461 AKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRT 1520
            AKI SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQKLSFALRT
Sbjct: 1330 AKIGSLDKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQKLSFALRT 1389

Query: 1521 ILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSD 1575
            ILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVG+HSKYQNTRCFVLIRSD
Sbjct: 1390 ILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSD 1449

[Close]

BLAST of ClCG10G003630 vs. NCBI nr
Match: XP_038905042.1 (DNA-directed RNA polymerase IV subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 2790.4 bits (7232), Expect = 0.0e+00
Identity = 1378/1462 (94.25%), Postives = 1407/1462 (96.24%), Query Frame = 0


Query: 145  MIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQC 204
            MIHM+DEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA+SEVSDPKLGLPNPSYQC
Sbjct: 1    MIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVSDPKLGLPNPSYQC 60

Query: 205  TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 264
            TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS
Sbjct: 61   TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 120

Query: 265  EYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 324
            +YHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQK+VAKGGLPS
Sbjct: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKKVAKGGLPS 180

Query: 325  DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTP 384
            DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA DSLFLNSFPVTP
Sbjct: 181  DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240

Query: 385  NSHRVTEMTHSFSNGQRLIF--------------------------------LSPEKLQS 444
            NSHRVTE+THSFSNGQRLIF                                LSPEKLQS
Sbjct: 241  NSHRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLKISKLSPEKLQS 300

Query: 445  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 504
            KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360

Query: 505  LQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD 564
            LQISEHLSSWNMKKLSTSCYL+LV KGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD
Sbjct: 361  LQISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD 420

Query: 565  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 624
            VVLVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 421  VVLVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480

Query: 625  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLP 684
            EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLN FQMQQLQMLALHQLLP
Sbjct: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQLQMLALHQLLP 540

Query: 685  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNL 744
            PAI+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH V I+NGELISSEGSYWLRDSGRNL
Sbjct: 541  PAIVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEGSYWLRDSGRNL 600

Query: 745  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 804
            FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 660

Query: 805  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 864
            EAEETCNLKQLMVD+HKDILT +DEDNQH+LSI ++RL YEKQKS ALNQASVDAFKKVF
Sbjct: 661  EAEETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALNQASVDAFKKVF 720

Query: 865  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 924
            RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LSFSLPHKL+CSA
Sbjct: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLSFSLPHKLSCSA 780

Query: 925  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 984
            WNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 781  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840

Query: 985  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGG 1044
            GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTS+SNELDSENNN+D DIGG
Sbjct: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNKDRDIGG 900

Query: 1045 HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 1104
            HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS
Sbjct: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960

Query: 1105 KRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1164
            KRSYGFEYGALGVKNHLERVMFKDIVS VMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR
Sbjct: 961  KRSYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1020

Query: 1165 RLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTK 1224
            RLKMNSVIHSLN+RCDSVRQEGRMNLPSLQII+QDCPLADS+REDGDTVCLTVTIAENTK
Sbjct: 1021 RLKMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTVCLTVTIAENTK 1080

Query: 1225 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVTMSGE 1284
            NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK  CNHGELYLRVTMSGE
Sbjct: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1140

Query: 1285 GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKT 1344
            GNSRFWATL+NNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSL SATLDIGKT
Sbjct: 1141 GNSRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLVSATLDIGKT 1200

Query: 1345 IRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGI 1404
            IRLEHLLL+ANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAG 
Sbjct: 1201 IRLEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGS 1260

Query: 1405 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIE 1464
            KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQS CEKQNAKI 
Sbjct: 1261 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSTCEKQNAKIG 1320

Query: 1465 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHK 1524
            SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQKLSFALRTILHK
Sbjct: 1321 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQKLSFALRTILHK 1380

Query: 1525 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTE 1575
            YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVG+HSKYQNTRCFVLIRSDGTTE
Sbjct: 1381 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTE 1440

[Close]

BLAST of ClCG10G003630 vs. NCBI nr
Match: TYK19428.1 (DNA-directed RNA polymerase IV subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 2745.7 bits (7116), Expect = 0.0e+00
Identity = 1363/1490 (91.48%), Postives = 1402/1490 (94.09%), Query Frame = 0


Query: 144  VMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQ 203
            VMIHM+DEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA+SEVSDPKLGLPNPSYQ
Sbjct: 13   VMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQ 72

Query: 204  CTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGK----- 263
            CTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGK     
Sbjct: 73   CTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVRKKM 132

Query: 264  ----------------VEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIM 323
                            VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIM
Sbjct: 133  MTLCHRNSSPFEIFIWVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIM 192

Query: 324  VEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP 383
            VEVKENMSKKYQKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP
Sbjct: 193  VEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP 252

Query: 384  KFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRL-------------------- 443
            KFLKKFVPAIDSLFLNSFPVTPNSHRVTEM HSFSNGQRL                    
Sbjct: 253  KFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTAN 312

Query: 444  ------------------IFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS 503
                              IFLSPEKLQSKDLVYQQKKIKDTATSS GLRWIKDVVLGKRS
Sbjct: 313  ELGSRVLDCLKISKAIYKIFLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRS 372

Query: 504  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVR 563
            DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VR
Sbjct: 373  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVR 432

Query: 564  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLN 623
            REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLN
Sbjct: 433  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLN 492

Query: 624  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 683
            PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA
Sbjct: 493  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 552

Query: 684  HLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSS 743
            HLI+EDGVSLNLFQMQQLQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDF+YSS
Sbjct: 553  HLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSS 612

Query: 744  PSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL 803
            PSH V IE GELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGL
Sbjct: 613  PSHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGL 672

Query: 804  SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLS 863
            SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVD+HK+ILT +DEDNQH+LS
Sbjct: 673  SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLS 732

Query: 864  IAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL 923
            IAV+ L YEKQKSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KL
Sbjct: 733  IAVEHLIYEKQKSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKL 792

Query: 924  VQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSF 983
            VQHSMCLGLQHSLVTLSFSLPHKL+CSAWNSQKMPRY Q+DGLPDRT SFIPYAVVE+SF
Sbjct: 793  VQHSMCLGLQHSLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSF 852

Query: 984  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 1043
            LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ
Sbjct: 853  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 912

Query: 1044 FSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL 1103
            F YDIDRPTS+S+E DSE NNRD DIGGHPVGSLAACA SEAAYSALDQPISLLEASPLL
Sbjct: 913  FCYDIDRPTSVSSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLL 972

Query: 1104 NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII 1163
            NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII
Sbjct: 973  NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMII 1032

Query: 1164 FSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII 1223
            FSPQPSRKKHFSPWVCHFHVCK+ILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII
Sbjct: 1033 FSPQPSRKKHFSPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII 1092

Query: 1224 TQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1283
            TQDCPLADSL EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD
Sbjct: 1093 TQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1152

Query: 1284 IAWNDRPKVPKLHCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHS 1343
            I WNDRPKVPK  C+HGELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDW+RSHPDNTHS
Sbjct: 1153 ITWNDRPKVPKPRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHS 1212

Query: 1344 LCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQRE 1403
            LCLAYGIDSGWKYFLNSLE ATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL+HQRE
Sbjct: 1213 LCLAYGIDSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQRE 1272

Query: 1404 HALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGR 1463
            HALVKTPFMQACFSSPGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+
Sbjct: 1273 HALVKTPFMQACFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGK 1332

Query: 1464 GHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDS 1523
            GHELNKPVDVYNLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDS
Sbjct: 1333 GHELNKPVDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDS 1392

Query: 1524 VSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1575
            VSKSILR+FLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG
Sbjct: 1393 VSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1452

[Close]

BLAST of ClCG10G003630 vs. NCBI nr
Match: XP_011650447.1 (DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >XP_011650449.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >KGN55963.1 hypothetical protein Csa_010842 [Cucumis sativus])

HSP 1 Score: 2744.1 bits (7112), Expect = 0.0e+00
Identity = 1352/1463 (92.41%), Postives = 1396/1463 (95.42%), Query Frame = 0


Query: 144  VMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQ 203
            VMIHM+DEQDGELPIPSGL+TGINFSVS QQD ENIAV+TVDA++EVSDPKLGLPNPSYQ
Sbjct: 13   VMIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQ 72

Query: 204  CTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPT 263
            CTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKS+RQELWGKVEDPT
Sbjct: 73   CTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPT 132

Query: 264  SEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP 323
            S+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP
Sbjct: 133  SDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP 192

Query: 324  SDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT 383
            SDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT
Sbjct: 193  SDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT 252

Query: 384  PNSHRVTEMTHSFSNGQRLIF--------------------------------LSPEKLQ 443
            PNSHRVTEM HSFSNGQRLIF                                LSPEKLQ
Sbjct: 253  PNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQ 312

Query: 444  SKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE 503
            +KDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE
Sbjct: 313  NKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE 372

Query: 504  RLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADG 563
            RLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNVLELNMGDTIYRPLADG
Sbjct: 373  RLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADG 432

Query: 564  DVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR 623
            D+VLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR
Sbjct: 433  DIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR 492

Query: 624  VEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLL 683
            VEVRELVSLD+QL NGQSGRNLLSLSHDSLTAAHLI+EDGVSLNLFQMQQLQML LHQLL
Sbjct: 493  VEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLL 552

Query: 684  PPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRN 743
            PPAI+K+PLLRNCAWTGKQLFS LLPPDFDYSSPSH V IE GELISSEGSYWLRDSGRN
Sbjct: 553  PPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRN 612

Query: 744  LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGL 803
            LFQALIEHCEGKTLDYL DAQGVLCEWLS RGLSVSLSDLYLSVDSYSH+NMMDDIFCGL
Sbjct: 613  LFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGL 672

Query: 804  QEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKV 863
            QEAEETCNLKQLMVD+HK+IL  +DEDNQH+LSIAV+RL YEKQKSAALNQASVDAFKKV
Sbjct: 673  QEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKV 732

Query: 864  FRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCS 923
            FRDIQNLVYKYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLSFSLPHKL+C+
Sbjct: 733  FRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCA 792

Query: 924  AWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEV 983
            AWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEV
Sbjct: 793  AWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEV 852

Query: 984  PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIG 1043
            PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS   E +SENNNRD  IG
Sbjct: 853  PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS---ESESENNNRDRGIG 912

Query: 1044 GHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKL 1103
            GHPVGSLAACA+SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKL
Sbjct: 913  GHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKL 972

Query: 1104 SKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKK 1163
            SKRSYGFEYGALGVKNHLERVMFKDIVS+VMIIFSP PSRKKHFSPWVCHFHVCKEILKK
Sbjct: 973  SKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKK 1032

Query: 1164 RRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENT 1223
            RRLKMNSVIHSLNMRCDS+RQEGRMNLPSLQIITQDCPLADSL EDGDTVCLTVTIAENT
Sbjct: 1033 RRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENT 1092

Query: 1224 KNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVTMSG 1283
            KNSFLQLDFIQDLLIHFLLGTVIRGF EIDRVDI WNDRPKVPK  C+HGELYLRVTMSG
Sbjct: 1093 KNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSG 1152

Query: 1284 EGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGK 1343
            EGNSRFWATLMNNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD+GK
Sbjct: 1153 EGNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGK 1212

Query: 1344 TIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAG 1403
            TIRLEHLLLV+NSLSATGEFVGLNVKGL+HQREHALVKTPFMQACFSSPGAC +KAAKAG
Sbjct: 1213 TIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAG 1272

Query: 1404 IKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKI 1463
            IKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQS CEKQN KI
Sbjct: 1273 IKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKI 1332

Query: 1464 ESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILH 1523
            ESLDKN ISEKYSAQL+LKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQKLSFALRTILH
Sbjct: 1333 ESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILH 1392

Query: 1524 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTT 1575
            KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVG+HSKYQNTRCFVLIRSDGTT
Sbjct: 1393 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTT 1452

[Close]

BLAST of ClCG10G003630 vs. NCBI nr
Match: XP_038905043.1 (DNA-directed RNA polymerase IV subunit 1 isoform X3 [Benincasa hispida] >XP_038905044.1 DNA-directed RNA polymerase IV subunit 1 isoform X3 [Benincasa hispida])

HSP 1 Score: 2730.3 bits (7076), Expect = 0.0e+00
Identity = 1349/1430 (94.34%), Postives = 1375/1430 (96.15%), Query Frame = 0


Query: 177  ENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSE 236
            ENIAV+TVDA+SEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSE
Sbjct: 14   ENIAVLTVDAASEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSE 73

Query: 237  VAQVLNKVCPGCKSIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF 296
            VAQVLNKVCPGCKSIRQELWGKVEDPTS+YHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF
Sbjct: 74   VAQVLNKVCPGCKSIRQELWGKVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF 133

Query: 297  KKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYL 356
            +KSMIMVEVKENMSKKYQK+VAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYL
Sbjct: 134  RKSMIMVEVKENMSKKYQKKVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYL 193

Query: 357  LKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF------------ 416
            LKDIDPKFLKKFVPA DSLFLNSFPVTPNSHRVTE+THSFSNGQRLIF            
Sbjct: 194  LKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTELTHSFSNGQRLIFDERTRAYKKVVD 253

Query: 417  --------------------LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS 476
                                LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS
Sbjct: 254  FRGTANELGSRILDCLKISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS 313

Query: 477  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVR 536
            DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYL+LV KGEIFVR
Sbjct: 314  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLNLVVKGEIFVR 373

Query: 537  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLN 596
            REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIAL VKLLPVSSVLSLN
Sbjct: 374  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALYVKLLPVSSVLSLN 433

Query: 597  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 656
            PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA
Sbjct: 434  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 493

Query: 657  HLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSS 716
            HLIMEDGVSLN FQMQQLQMLALHQLLPPAI+KAPL RNCAWTGKQLFS LLPPDFDYSS
Sbjct: 494  HLIMEDGVSLNAFQMQQLQMLALHQLLPPAIVKAPLFRNCAWTGKQLFSILLPPDFDYSS 553

Query: 717  PSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL 776
            PSH V I+NGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL
Sbjct: 554  PSHNVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL 613

Query: 777  SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLS 836
            SVSLSDLYLSVDS+SHKNMMDDIFCGLQEAEETCNLKQLMVD+HKDILT +DEDNQH+LS
Sbjct: 614  SVSLSDLYLSVDSHSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGNDEDNQHMLS 673

Query: 837  IAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL 896
            I ++RL YEKQKS ALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL
Sbjct: 674  IEMERLIYEKQKSVALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL 733

Query: 897  VQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSF 956
            VQHSMCLGLQHSLV LSFSLPHKL+CSAWNSQKMPRY QKDGLPDRT SFIPYAVVE+SF
Sbjct: 734  VQHSMCLGLQHSLVFLSFSLPHKLSCSAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSF 793

Query: 957  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 1016
            LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ
Sbjct: 794  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 853

Query: 1017 FSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL 1076
            FSYDIDRPTS+SNELDSENNN+D DIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL
Sbjct: 854  FSYDIDRPTSVSNELDSENNNKDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL 913

Query: 1077 NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII 1136
            NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS VMII
Sbjct: 914  NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSTVMII 973

Query: 1137 FSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII 1196
            FSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLN+RCDSVRQEGRMNLPSLQII
Sbjct: 974  FSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNIRCDSVRQEGRMNLPSLQII 1033

Query: 1197 TQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1256
            +QDCPLADS+REDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD
Sbjct: 1034 SQDCPLADSVREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1093

Query: 1257 IAWNDRPKVPKLHCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHS 1316
            IAWNDRPKVPK  CNHGELYLRVTMSGEGNSRFWATL+NNCLPVMDLIDWSRSHPDNTHS
Sbjct: 1094 IAWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLVNNCLPVMDLIDWSRSHPDNTHS 1153

Query: 1317 LCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQRE 1376
            LCLAYGIDSGWKYFLNSL SATLDIGKTIRLEHLLL+ANSLSATGEFVGLNVKGLSHQRE
Sbjct: 1154 LCLAYGIDSGWKYFLNSLVSATLDIGKTIRLEHLLLIANSLSATGEFVGLNVKGLSHQRE 1213

Query: 1377 HALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGR 1436
            HALVKTPFMQACFSSPGACFVKAAKAG KDNLSGSLDALAWGRIPSLGTGGQFDILYSGR
Sbjct: 1214 HALVKTPFMQACFSSPGACFVKAAKAGSKDNLSGSLDALAWGRIPSLGTGGQFDILYSGR 1273

Query: 1437 GHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDS 1496
            GHELNKPVDVYNLLGGQS CEKQNAKI SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+
Sbjct: 1274 GHELNKPVDVYNLLGGQSTCEKQNAKIGSLDKNNISEKYSAQLVLKNGGSTIKGLKKLDN 1333

Query: 1497 VSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1556
            VSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG
Sbjct: 1334 VSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1393

Query: 1557 AQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKG 1575
            AQDIKVG+HSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKG
Sbjct: 1394 AQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKG 1443

[Close]

BLAST of ClCG10G003630 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 1425.6 bits (3689), Expect = 0.0e+00
Identity = 753/1466 (51.36%), Postives = 994/1466 (67.80%), Query Frame = 0


Query: 148  MDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTC 207
            M+D+ + EL +P G +T I FS+S   D + ++V+ V+A ++V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 208  GASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYH 267
            G+   K CEGHFGVI F Y+II+PYFL EVA +LNK+CPGCK IR++ +   ED      
Sbjct: 61   GSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITED------ 120

Query: 268  RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYW 327
            +P+ CRYC  +L   YP M+F+++T ++F++S I+VEV E    K +KR     LP DYW
Sbjct: 121  QPERCRYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYW 180

Query: 328  NFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSH 387
            +F+P+D   +ES  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +
Sbjct: 181  SFLPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGY 240

Query: 388  RVTEMTHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS-- 447
            RVTE+ H F NG RLIF    ++  K                + +   +   +T +SS  
Sbjct: 241  RVTEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKD 300

Query: 448  --------------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQI 507
                           GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+
Sbjct: 301  SANPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQV 360

Query: 508  SEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVL 567
            SEHL+  N ++L TS    L++  E+ VRR  RLV ++ V +L  GD I+R L DGD VL
Sbjct: 361  SEHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVL 420

Query: 568  VNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVR 627
            +NRPPSIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ 
Sbjct: 421  MNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELD 480

Query: 628  ELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVSLNLFQMQQLQMLALHQLLPPA 687
            ELV+LD+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL PPA
Sbjct: 481  ELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPA 540

Query: 688  ILKA-PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELIS-SEGSYWLRDSGRNL 747
            I+KA P      WTG QLF  L PP FDY+ P + V++ NGEL+S SEGS WLRD   N 
Sbjct: 541  IIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNF 600

Query: 748  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 807
             + L++H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+
Sbjct: 601  IERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLR 660

Query: 808  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 867
            EAE+ CN +QLMV++ +D L  + ED +      + R  YE+QKSA L++ +V AFK  +
Sbjct: 661  EAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAY 720

Query: 868  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 927
            RD+Q L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+A
Sbjct: 721  RDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAA 780

Query: 928  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 987
            WN    P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++P
Sbjct: 781  WNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLP 840

Query: 988  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGG 1047
            GTL+R+L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G
Sbjct: 841  GTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITG 900

Query: 1048 HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 1107
              +GSL+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LS
Sbjct: 901  EALGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLS 960

Query: 1108 KRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1167
            K+ +GFEYG+L +KNHLE++ F +IVS  MIIFSP  + K   SPWVCHFH+ +++LK++
Sbjct: 961  KKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRK 1020

Query: 1168 RLKMNSVIHSLNMRCDSVRQEGRMNLPSLQI-ITQDCPLADSLREDGDTVCLTVTIAENT 1227
            +L   SV+ SLN +  S  +E ++++  L I  T  C   D   +D D VC+TVT+ E +
Sbjct: 1021 QLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKD-DNVCITVTVVEAS 1080

Query: 1228 KNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNH--GELYLRVTM 1287
            K+S L+LD I+ +LI FLL + ++G   I +V+I W DRPK PK + NH  GELYL+VTM
Sbjct: 1081 KHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTM 1140

Query: 1288 SGE-GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD 1347
             G+ G    W  L+  CLP+MD+IDW RSHPDN    C  YGID+G   F+ +LESA  D
Sbjct: 1141 YGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSD 1200

Query: 1348 IGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAA 1407
             GK I  EHLLLVA+SLS TGEFV LN KG S QR+      PF QACFSSP  CF+KAA
Sbjct: 1201 TGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAA 1260

Query: 1408 KAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQN 1467
            K G++D+L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N
Sbjct: 1261 KEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTN 1320

Query: 1468 AKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFAL 1527
            +  +       S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L
Sbjct: 1321 SAPK-------SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSL 1380

Query: 1528 RTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIR 1573
            + ILH Y +NE LNE D+  + M L  HP+  EKIG G + I+V   SK+ ++ CF ++R
Sbjct: 1381 KRILHSYEINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVR 1431

[Close]

BLAST of ClCG10G003630 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 5.0e-107
Identity = 362/1371 (26.40%), Postives = 594/1371 (43.33%), Query Frame = 0


Query: 151  EQDGELPIPSGLVTGINFSVSTQQD--TENIAVMTVDASSEVSDPKLGLPNPSYQCTTCG 210
            E++    I  G + GI F++++  +   ++I+   ++  S++++  LGLP    +C +CG
Sbjct: 2    EEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCG 61

Query: 211  ASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHR 270
            A+    CEGHFG I+ P  I HP  ++E+ Q+L+ +C  C  I+               +
Sbjct: 62   ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIK---------------K 121

Query: 271  PKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY--QKRVAKGGLPSDY 330
             KG     G L D       +L      + S I ++ + +    Y   K  ++  L    
Sbjct: 122  AKGTS---GGLAD-------RLLGVCCEEASQISIKDRASDGASYLELKLPSRSRLQPGC 181

Query: 331  WNFIPK-DEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKF-----VPAIDSLFLNSF 390
            WNF+ +   +    Y RP    L   +V  +L+ I  +  KK      +P  +   L   
Sbjct: 182  WNFLERYGYRYGSDYTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQ-EGYILEYL 241

Query: 391  PVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLV------------------------ 450
            PV PN   V E +  FS     + + P +++ KD++                        
Sbjct: 242  PVPPNCLSVPEASDGFST----MSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEAS 301

Query: 451  -------------------------YQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMV 510
                                     Y   KI D+++S      ++ + + K S    R V
Sbjct: 302  EMFRVVDTYLQVRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSV 361

Query: 511  VVGDPNIELSEIGIPCHVAERLQISEHLSSWN----MKKLSTSCYLHLVEKGEIFVRREG 570
            + GD    ++E+GIP  +A+R+   E +S  N     K +     L   +    +  R+G
Sbjct: 362  ITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDG 421

Query: 571  RLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLC 630
                 +   EL  G  ++R + DGDVV +NRPP+ H+HSL AL V  +   + + +NPL 
Sbjct: 422  S----KGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV-YVHEDNTVKINPLM 481

Query: 631  CSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI 690
            CSP   DFDGDC+H + PQSL A+ EV EL S+++QL++  +G+ +L +  DSL +  ++
Sbjct: 482  CSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM 541

Query: 691  MEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSH 750
            +E  V L+    QQL M     L PPA+ K+      AWT  Q+     P     S    
Sbjct: 542  LE-RVFLDKATAQQLAMYGSLSLPPPALRKSS-KSGPAWTVFQILQLAFPERL--SCKGD 601

Query: 751  CVLIENGELISSEGSYWLRDSGRN--LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLS 810
              L++  +L+  +       S  N  +    +E    +TL +    Q +L E L   G S
Sbjct: 602  RFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFS 661

Query: 811  VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSI 870
            +SL DL     S S  +M  D+   L   E +  + +L +    ++  E+          
Sbjct: 662  LSLEDL-----SMSRADM--DVIHNLIIREISPMVSRLRLSYRDELQLEN---------- 721

Query: 871  AVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLV 930
                 S  K K  A N      F      I+NL+     K NS +T           KLV
Sbjct: 722  -----SIHKVKEVAAN------FMLKSYSIRNLI---DIKSNSAIT-----------KLV 781

Query: 931  QHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFL 990
            Q +  LGLQ S     ++       + +  +K            R SS   + +V+  F 
Sbjct: 782  QQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKY----------GRISSSGDFGIVKGCFF 841

Query: 991  SGLNPFECFAHSVTNRD--SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLV 1050
             GL+P+E  AHS+  R+     S     PGTL + L  ++RDI    DGTVRN   N ++
Sbjct: 842  HGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVI 901

Query: 1051 QFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPL 1110
            QF Y +          DSE  ++     G PVG LAA AMS  AY A      +L++SP 
Sbjct: 902  QFKYGV----------DSERGHQGLFEAGEPVGVLAATAMSNPAYKA------VLDSSPN 961

Query: 1111 LN-----LKRVLEC--GSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKD 1170
             N     +K VL C    +  +  +   L+L+E    + +  E  A  V+N L +V  KD
Sbjct: 962  SNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKD 1021

Query: 1171 IVSNVMIIFSPQPSRKKHFSPWVC---HFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQE 1230
                 ++ +  QP+  + F    C   H H+ K +L+   + M  +        +S+ Q+
Sbjct: 1022 TAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQK 1081

Query: 1231 GRMNLP-----SLQIITQDCPLADSLREDG-DTVCLTVTIAENTKNSFLQLDFIQDLLIH 1290
             +         +   +++ C   D     G D  CLT +      +    LD + + +  
Sbjct: 1082 KKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNATDPDLERTLDVLCNTVYP 1141

Query: 1291 FLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNH----GELYLRVTMSGEG---NSRFWAT 1350
             LL  VI+G + I   +I WN       +   H    GE  L VT+       +   W  
Sbjct: 1142 VLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRV 1201

Query: 1351 LMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLL 1410
            ++++CL V+ LID  RS P +   +    G+   ++  +  L ++   + K +  EH++L
Sbjct: 1202 VIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIIL 1259

Query: 1411 VANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSL 1430
            +AN+++ +G  +G N  G         +K PF +A   +P  CF KAA+    D+LS  +
Sbjct: 1262 LANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVV 1259

HSP 2 Score: 62.8 bits (151), Expect = 4.1e-08
Identity = 37/117 (31.62%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1460 KKLDSVSKSILREFLTLNDIQKLSFALRTILH--KYSLNERLNEVDKS-TLMMALYFHPH 1519
            ++LDS +     E   L+D++ +   LR I+H   Y   + +++ DK+  L   L FHP 
Sbjct: 1727 QRLDSFTS---EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQ 1786

Query: 1520 RDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVK 1574
            ++ K+G G   I V  H+ + ++RCF ++ +DG  +DFSY K +   L    P R +
Sbjct: 1787 KETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAE 1840

[Close]

BLAST of ClCG10G003630 vs. ExPASy Swiss-Prot
Match: P36594 (DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpb1 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-57
Identity = 225/934 (24.09%), Postives = 404/934 (43.25%), Query Frame = 0


Query: 158 IPSGLVTGINFSVSTQQDTENIAVM------TVDASSE------VSDPKLGLPNPSYQCT 217
           +P   V  + F + + ++  +++V       T+D S +      + DP+LG  +  ++C 
Sbjct: 11  VPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQ 70

Query: 218 TCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSE 277
           TCG  ++  C GHFG I+    + H  FLS++ ++L  VC  C  ++ +      + T  
Sbjct: 71  TCG-ETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFNDTQR 130

Query: 278 YHRPKGCRYCFGSLKDWYPPMRFKLST-TDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 337
           Y  PK       ++          LS  +D F  S     +        Q  + K GL  
Sbjct: 131 YRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDGL-- 190

Query: 338 DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLL-----KDIDPKFLKKFVPAIDSLFLNS 397
             W    + + + +    P +++L+  +VH +      +D+    L +     D + +  
Sbjct: 191 RLWGSWKRGKDESD---LPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITV 250

Query: 398 FPVTPNS------------------HRVTEM----------------THSFSNGQRLIFL 457
            PV P S                  H+++++                 H  S  ++L+  
Sbjct: 251 LPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQF 310

Query: 458 SPEKLQSKDLVYQQKKIKDTATSSYGLR--------WIKDVVLGKRSDHCFRMVVVGDPN 517
                   ++  Q + ++ +      +R         ++  ++GKR D   R V+ GDPN
Sbjct: 311 HVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 370

Query: 518 IELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKG-------EIFVRREGRLV 577
           + L E+G+P  +A+ L   E ++ +N+ +L       LV  G       +  +R  G  +
Sbjct: 371 LSLDELGVPRSIAKTLTYPETVTPYNIYQLQ-----ELVRNGPDEHPGAKYIIRDTGERI 430

Query: 578 RVR-----NVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNP 637
            +R       + L  G  + R + DGDVV+ NR PS+H+ S++   ++++P S+   LN 
Sbjct: 431 DLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYST-FRLNL 490

Query: 638 LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH 697
              SP+  DFDGD ++ +VPQS E R E++E+  + +Q+++ QS + ++ +  D+L    
Sbjct: 491 SVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVR 550

Query: 698 --LIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPP----- 757
              + ++ ++ N      L +     +LPP ++  P      WTGKQ+ S ++P      
Sbjct: 551 KFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKP---KVLWTGKQILSLIIPKGINLI 610

Query: 758 -DFDYSSPSH----CVLIENGELI----------SSEG----SYWLRDSGRNLFQALIEH 817
            D D  S S+     +LIENGE+I          +S+G    + W ++ G        E 
Sbjct: 611 RDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIW-KEKGP-------EI 670

Query: 818 CEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCN 877
           C+G    + +  Q V+  WL   G S+ + D     D+      M ++   ++EA     
Sbjct: 671 CKG----FFNGIQRVVNYWLLHNGFSIGIGDTIADADT------MKEVTRTVKEARR--Q 730

Query: 878 LKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLV 937
           + + + DA  + L  +             R S+E + S  LNQA         RD     
Sbjct: 731 VAECIQDAQHNRLKPEPG--------MTLRESFEAKVSRILNQA---------RDNAGRS 790

Query: 938 YKYSGKD-NSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKM 991
            ++S KD N++  M  AGSKG+ + + Q S C+G Q         +  K     +  + +
Sbjct: 791 AEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQ--------IVEGKRIPFGFKYRTL 850

[Close]

BLAST of ClCG10G003630 vs. ExPASy Swiss-Prot
Match: Q75A34 (DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPB1 PE=3 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-50
Identity = 226/891 (25.36%), Postives = 391/891 (43.88%), Query Frame = 0


Query: 190 VSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCK 249
           ++DP+LG  + +++C TCG   +  C GHFG I+    + H  F+S++ +V   VC  C 
Sbjct: 53  LNDPRLGSIDRNFKCQTCG-EGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCG 112

Query: 250 SIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEV-KEN 309
            +       + D  +E  R         ++K   P  RF    +    K +   EV  E+
Sbjct: 113 KL-------LLDEYNELMRQ--------AIKIKDPKRRFNAVWSLCKAKMVCDTEVPSED 172

Query: 310 MSKKYQKR----VAKGGLPSDYWNFIP--KDEQQEESYCRPNRKILTHAQVHYLLKDIDP 369
              KY  R     A+  +  D  + +   K ++  E   +P ++I++  ++  + K I P
Sbjct: 173 DPSKYISRGGCGNAQPSIRKDGLSLVGTWKKDKNAEDADQPEKRIISAEEILNVFKHISP 232

Query: 370 K------FLKKFVPAIDSLFLNSFPVTPN------------------SHRVTEMTHSFSN 429
           +      F + F    + + L   PV P                   ++++ ++  +  N
Sbjct: 233 EDSWRLGFNEDF-SRPEWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANIN 292

Query: 430 GQRL-IFLSPEKL---------------QSKDLVYQQKKIKDTATSSYGLR--------W 489
            QRL I  SP+ +                  D+  Q + ++ +      +R         
Sbjct: 293 VQRLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGR 352

Query: 490 IKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLH 549
           I+  ++GKR D   R V+ GDPN++L ++G+P  +A+ L   E ++ +N+ +L+      
Sbjct: 353 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLT-----Q 412

Query: 550 LVEKG-------EIFVRREGRLVRVR-----NVLELNMGDTIYRPLADGDVVLVNRPPSI 609
           LV  G       +  +R  G  + +R       ++L  G  + R + D D VL NR PS+
Sbjct: 413 LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSL 472

Query: 610 HQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDR 669
           H+ S++A  VK++P S+   LN    SP+  DFDGD ++ +VPQS E R E+ +L ++  
Sbjct: 473 HKMSMMAHRVKVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPL 532

Query: 670 QLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQML----ALHQLLP-PAILK 729
           Q+++ QS +  + +  D+L     +      + L Q+  L ML        ++P P ILK
Sbjct: 533 QIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQV--LNMLYWIPDWDGVIPTPTILK 592

Query: 730 APLLRNCAWTGKQLFSTLLPPD-----FD----YSSP-SHCVLIENGELI------SSEG 789
              L    W+GKQL S  +P       FD    Y SP  + +LI +G++I       + G
Sbjct: 593 PKPL----WSGKQLLSMAIPSGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVG 652

Query: 790 SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 849
           S     SG  +     E           + Q V+  WL   G S+ + D     D  + +
Sbjct: 653 S----SSGGLIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDTI--ADEKTMR 712

Query: 850 NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 909
            + D I    ++ EE         +A  ++LT      +H +++   R S+E      LN
Sbjct: 713 EITDAIALAKKKVEEVTK------EAQANLLTA-----KHGMTL---RESFEDNVVRYLN 772

Query: 910 QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 969
           +A   A +    ++++L        N++  M  AGSKG+ + + Q S C+G Q       
Sbjct: 773 EARDKAGRSAEVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQ------- 832

Query: 970 FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 991
            S+  K     +  + +P +++ D  P+          VE+S+L GL P E F H++  R
Sbjct: 833 -SVEGKRIAFGFADRTLPHFSKDDYSPESK------GFVENSYLRGLTPQEFFFHAMGGR 871

[Close]

BLAST of ClCG10G003630 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-49
Identity = 219/902 (24.28%), Postives = 379/902 (42.02%), Query Frame = 0


Query: 192 DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVC------ 251
           DP+ G+   + +C TC A ++  C GHFG I+    + H  FL +  +VL  VC      
Sbjct: 59  DPRQGVIERTGRCQTC-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 118

Query: 252 ------PGCKSIRQELWGKVEDP-TSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKK 311
                 P  K I  +  G+ +   T  Y   KG   C G        M  K         
Sbjct: 119 LVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGG-----EEMDNKFGVEQPEGD 178

Query: 312 SMIMVEVKENMSKKYQKRVAKGGLP-SDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLL 371
             +  E       +YQ R+ + GL     W  + +D Q+++    P R       VH + 
Sbjct: 179 EDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPER-------VHEIF 238

Query: 372 KDIDPK--FLKKFVPAI---DSLFLNSFPVTPNS------------------HRVTEM-- 431
           K I  +  F+    P     + + +   PV P S                  H++ ++  
Sbjct: 239 KRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVK 298

Query: 432 --------------THSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRW---- 491
                          H  +   +L+      +   +L    + ++ +      L+     
Sbjct: 299 INNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKG 358

Query: 492 ----IKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTS 551
               ++  ++GKR D   R V+  DPN+ + ++G+P  +A  +  +E ++ +N+ +L   
Sbjct: 359 KEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQ-- 418

Query: 552 CYLHLVEKG-------EIFVRREGRLVRVR-----NVLELNMGDTIYRPLADGDVVLVNR 611
               LV +G       +  +R  G  + +R     + L L  G  + R + DGD+V+ NR
Sbjct: 419 ---ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 478

Query: 612 PPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELV 671
            P++H+ S++   V++LP S+   LN    +P+  DFDGD ++ ++PQSLE R E++EL 
Sbjct: 479 QPTLHKMSMMGHRVRILPWST-FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELA 538

Query: 672 SLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLAL---HQLLPPAI 731
            + R ++  QS R ++ +  D+LTA     +  V L   ++  L M       ++  PAI
Sbjct: 539 MVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAI 598

Query: 732 LKAPLLRNCAWTGKQLFSTLLP------------PDFDYSSP-SHC------VLIENGEL 791
           LK   L    WTGKQ+FS ++P            PD + S P  H       V++ENGEL
Sbjct: 599 LKPRPL----WTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGEL 658

Query: 792 I------SSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSD 851
           I       S G+     +G  +  + +E     T  +  + Q V+  WL + G ++ + D
Sbjct: 659 IMGILCKKSLGT----SAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD 718

Query: 852 LYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRL 911
                DS +++++ + I    Q+  E      ++  AH + L     +          R 
Sbjct: 719 SI--ADSKTYQDIQNTIKKAKQDVIE------VIEKAHNNELEPTPGNTL--------RQ 778

Query: 912 SYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMC 971
           ++E Q +  LN    DA  K     Q  + +Y    N+  +M  +G+KG+ + + Q    
Sbjct: 779 TFENQVNRILN----DARDKTGSSAQKSLSEY----NNFKSMVVSGAKGSKINISQVIAV 838

Query: 972 LGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNP 991
           +G Q        ++  K     +  + +P + + D  P+          VE+S+L+GL P
Sbjct: 839 VGQQ--------NVEGKRIPFGFKHRTLPHFIKDDYGPESR------GFVENSYLAGLTP 894

[Close]

BLAST of ClCG10G003630 vs. ExPASy TrEMBL
Match: A0A5D3D780 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00770 PE=4 SV=1)

HSP 1 Score: 2745.7 bits (7116), Expect = 0.0e+00
Identity = 1363/1490 (91.48%), Postives = 1402/1490 (94.09%), Query Frame = 0


Query: 144  VMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQ 203
            VMIHM+DEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA+SEVSDPKLGLPNPSYQ
Sbjct: 13   VMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQ 72

Query: 204  CTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGK----- 263
            CTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGK     
Sbjct: 73   CTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVRKKM 132

Query: 264  ----------------VEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIM 323
                            VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIM
Sbjct: 133  MTLCHRNSSPFEIFIWVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIM 192

Query: 324  VEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP 383
            VEVKENMSKKYQKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP
Sbjct: 193  VEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP 252

Query: 384  KFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRL-------------------- 443
            KFLKKFVPAIDSLFLNSFPVTPNSHRVTEM HSFSNGQRL                    
Sbjct: 253  KFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTAN 312

Query: 444  ------------------IFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS 503
                              IFLSPEKLQSKDLVYQQKKIKDTATSS GLRWIKDVVLGKRS
Sbjct: 313  ELGSRVLDCLKISKAIYKIFLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRS 372

Query: 504  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVR 563
            DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VR
Sbjct: 373  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVR 432

Query: 564  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLN 623
            REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLN
Sbjct: 433  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLN 492

Query: 624  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 683
            PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA
Sbjct: 493  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 552

Query: 684  HLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSS 743
            HLI+EDGVSLNLFQMQQLQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDF+YSS
Sbjct: 553  HLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSS 612

Query: 744  PSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL 803
            PSH V IE GELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGL
Sbjct: 613  PSHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGL 672

Query: 804  SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLS 863
            SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVD+HK+ILT +DEDNQH+LS
Sbjct: 673  SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLS 732

Query: 864  IAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL 923
            IAV+ L YEKQKSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KL
Sbjct: 733  IAVEHLIYEKQKSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKL 792

Query: 924  VQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSF 983
            VQHSMCLGLQHSLVTLSFSLPHKL+CSAWNSQKMPRY Q+DGLPDRT SFIPYAVVE+SF
Sbjct: 793  VQHSMCLGLQHSLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSF 852

Query: 984  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 1043
            LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ
Sbjct: 853  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 912

Query: 1044 FSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL 1103
            F YDIDRPTS+S+E DSE NNRD DIGGHPVGSLAACA SEAAYSALDQPISLLEASPLL
Sbjct: 913  FCYDIDRPTSVSSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLL 972

Query: 1104 NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII 1163
            NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII
Sbjct: 973  NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMII 1032

Query: 1164 FSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII 1223
            FSPQPSRKKHFSPWVCHFHVCK+ILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII
Sbjct: 1033 FSPQPSRKKHFSPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQII 1092

Query: 1224 TQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1283
            TQDCPLADSL EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD
Sbjct: 1093 TQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1152

Query: 1284 IAWNDRPKVPKLHCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHS 1343
            I WNDRPKVPK  C+HGELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDW+RSHPDNTHS
Sbjct: 1153 ITWNDRPKVPKPRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHS 1212

Query: 1344 LCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQRE 1403
            LCLAYGIDSGWKYFLNSLE ATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL+HQRE
Sbjct: 1213 LCLAYGIDSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQRE 1272

Query: 1404 HALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGR 1463
            HALVKTPFMQACFSSPGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+
Sbjct: 1273 HALVKTPFMQACFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGK 1332

Query: 1464 GHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDS 1523
            GHELNKPVDVYNLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDS
Sbjct: 1333 GHELNKPVDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDS 1392

Query: 1524 VSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1575
            VSKSILR+FLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG
Sbjct: 1393 VSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1452

[Close]

BLAST of ClCG10G003630 vs. ExPASy TrEMBL
Match: A0A0A0L2L4 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_3G039340 PE=4 SV=1)

HSP 1 Score: 2744.1 bits (7112), Expect = 0.0e+00
Identity = 1352/1463 (92.41%), Postives = 1396/1463 (95.42%), Query Frame = 0


Query: 144  VMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQ 203
            VMIHM+DEQDGELPIPSGL+TGINFSVS QQD ENIAV+TVDA++EVSDPKLGLPNPSYQ
Sbjct: 13   VMIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQ 72

Query: 204  CTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPT 263
            CTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKS+RQELWGKVEDPT
Sbjct: 73   CTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPT 132

Query: 264  SEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP 323
            S+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP
Sbjct: 133  SDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP 192

Query: 324  SDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT 383
            SDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT
Sbjct: 193  SDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT 252

Query: 384  PNSHRVTEMTHSFSNGQRLIF--------------------------------LSPEKLQ 443
            PNSHRVTEM HSFSNGQRLIF                                LSPEKLQ
Sbjct: 253  PNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQ 312

Query: 444  SKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE 503
            +KDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE
Sbjct: 313  NKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE 372

Query: 504  RLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADG 563
            RLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNVLELNMGDTIYRPLADG
Sbjct: 373  RLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADG 432

Query: 564  DVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR 623
            D+VLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR
Sbjct: 433  DIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR 492

Query: 624  VEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLL 683
            VEVRELVSLD+QL NGQSGRNLLSLSHDSLTAAHLI+EDGVSLNLFQMQQLQML LHQLL
Sbjct: 493  VEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLL 552

Query: 684  PPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRN 743
            PPAI+K+PLLRNCAWTGKQLFS LLPPDFDYSSPSH V IE GELISSEGSYWLRDSGRN
Sbjct: 553  PPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRN 612

Query: 744  LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGL 803
            LFQALIEHCEGKTLDYL DAQGVLCEWLS RGLSVSLSDLYLSVDSYSH+NMMDDIFCGL
Sbjct: 613  LFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGL 672

Query: 804  QEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKV 863
            QEAEETCNLKQLMVD+HK+IL  +DEDNQH+LSIAV+RL YEKQKSAALNQASVDAFKKV
Sbjct: 673  QEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKV 732

Query: 864  FRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCS 923
            FRDIQNLVYKYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLSFSLPHKL+C+
Sbjct: 733  FRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCA 792

Query: 924  AWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEV 983
            AWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEV
Sbjct: 793  AWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEV 852

Query: 984  PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIG 1043
            PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS   E +SENNNRD  IG
Sbjct: 853  PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS---ESESENNNRDRGIG 912

Query: 1044 GHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKL 1103
            GHPVGSLAACA+SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKL
Sbjct: 913  GHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKL 972

Query: 1104 SKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKK 1163
            SKRSYGFEYGALGVKNHLERVMFKDIVS+VMIIFSP PSRKKHFSPWVCHFHVCKEILKK
Sbjct: 973  SKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKK 1032

Query: 1164 RRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENT 1223
            RRLKMNSVIHSLNMRCDS+RQEGRMNLPSLQIITQDCPLADSL EDGDTVCLTVTIAENT
Sbjct: 1033 RRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENT 1092

Query: 1224 KNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVTMSG 1283
            KNSFLQLDFIQDLLIHFLLGTVIRGF EIDRVDI WNDRPKVPK  C+HGELYLRVTMSG
Sbjct: 1093 KNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSG 1152

Query: 1284 EGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGK 1343
            EGNSRFWATLMNNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD+GK
Sbjct: 1153 EGNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGK 1212

Query: 1344 TIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAG 1403
            TIRLEHLLLV+NSLSATGEFVGLNVKGL+HQREHALVKTPFMQACFSSPGAC +KAAKAG
Sbjct: 1213 TIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAG 1272

Query: 1404 IKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKI 1463
            IKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQS CEKQN KI
Sbjct: 1273 IKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKI 1332

Query: 1464 ESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILH 1523
            ESLDKN ISEKYSAQL+LKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQKLSFALRTILH
Sbjct: 1333 ESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILH 1392

Query: 1524 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTT 1575
            KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVG+HSKYQNTRCFVLIRSDGTT
Sbjct: 1393 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTT 1452

[Close]

BLAST of ClCG10G003630 vs. ExPASy TrEMBL
Match: A0A1S4DY39 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103490982 PE=4 SV=1)

HSP 1 Score: 2726.4 bits (7066), Expect = 0.0e+00
Identity = 1352/1473 (91.79%), Postives = 1392/1473 (94.50%), Query Frame = 0


Query: 144  VMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQ 203
            VMIHM+DEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA+SEVSDPKLGLPNPSYQ
Sbjct: 13   VMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQ 72

Query: 204  CTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPT 263
            CTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPT
Sbjct: 73   CTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPT 132

Query: 264  SEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP 323
            S+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP
Sbjct: 133  SDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLP 192

Query: 324  SDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT 383
            SDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT
Sbjct: 193  SDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVT 252

Query: 384  PNSHRVTEMTHSFSNGQRLIF---------------------------LSPEKLQSKDLV 443
            PNSHRVTEM HSFSNGQRLIF                           L   K   K  V
Sbjct: 253  PNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYKIFV 312

Query: 444  Y---------------QQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 503
            +                 KKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 313  FCLNHPREVTKXRFGLPAKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 372

Query: 504  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 563
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNVLELNMG
Sbjct: 373  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMG 432

Query: 564  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 623
            DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLH
Sbjct: 433  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLH 492

Query: 624  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQ 683
            GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI+EDGVSLNLFQMQQ
Sbjct: 493  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQ 552

Query: 684  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 743
            LQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSPSH V IE GELISSEG
Sbjct: 553  LQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGELISSEG 612

Query: 744  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 803
            SYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK
Sbjct: 613  SYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 672

Query: 804  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 863
            NMMDDIFCGLQEAEETCNLKQLMVD+HK+ILT +DEDNQH+LSIAV+ L YEKQKSAALN
Sbjct: 673  NMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLIYEKQKSAALN 732

Query: 864  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 923
            QASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLS
Sbjct: 733  QASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLS 792

Query: 924  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 983
            FSLPHKL+CSAWNSQKMPRY Q+DGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 793  FSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 852

Query: 984  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 1043
            DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS+S+E DS
Sbjct: 853  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSVSSESDS 912

Query: 1044 ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1103
            E NNRD DIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ
Sbjct: 913  E-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 972

Query: 1104 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCH 1163
            TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMIIFSPQPSRKKHFSPWVCH
Sbjct: 973  TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPQPSRKKHFSPWVCH 1032

Query: 1164 FHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTV 1223
            FHVCK+ILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSL EDGDTV
Sbjct: 1033 FHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLTEDGDTV 1092

Query: 1224 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHG 1283
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI WNDRPKVPK  C+HG
Sbjct: 1093 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDITWNDRPKVPKPRCSHG 1152

Query: 1284 ELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1343
            ELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNS
Sbjct: 1153 ELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNS 1212

Query: 1344 LESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1403
            LE ATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL+HQREHALVKTPFMQACFSSPG
Sbjct: 1213 LECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPG 1272

Query: 1404 ACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1463
            AC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQ
Sbjct: 1273 ACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQ 1332

Query: 1464 SICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQK 1523
            S CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQK
Sbjct: 1333 STCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQK 1392

Query: 1524 LSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRC 1575
            LSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVG+HSKYQNTRC
Sbjct: 1393 LSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRC 1452

[Close]

BLAST of ClCG10G003630 vs. ExPASy TrEMBL
Match: A0A6J1FKU9 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444908 PE=4 SV=1)

HSP 1 Score: 2602.8 bits (6745), Expect = 0.0e+00
Identity = 1283/1462 (87.76%), Postives = 1354/1462 (92.61%), Query Frame = 0


Query: 145  MIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQC 204
            M HM+DEQD EL IPSG++ G+NFSVSTQQD ENIAV+ ++A+ EVSDPKLGLPNPSYQC
Sbjct: 14   MNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVSDPKLGLPNPSYQC 73

Query: 205  TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 264
            TTCGAS LK CEGHFG IKFPYTIIHPYFLSEVAQVLNKVCPGCKSIR+ELWGKVEDPTS
Sbjct: 74   TTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRRELWGKVEDPTS 133

Query: 265  EYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 324
            ++HRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQKRVA+GGLP 
Sbjct: 134  DFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVARGGLPP 193

Query: 325  DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTP 384
            DYWNFIPKDEQQEESYCRPNRK+LTHAQVHYLLKDIDPKFLKKFV A DSLFLNSFPVTP
Sbjct: 194  DYWNFIPKDEQQEESYCRPNRKVLTHAQVHYLLKDIDPKFLKKFVSATDSLFLNSFPVTP 253

Query: 385  NSHRVTEMTHSFSNGQRLIF--------------------------------LSPEKLQS 444
            N HRVTEMTHSFS+GQRL+F                                LSPEKL+S
Sbjct: 254  NCHRVTEMTHSFSSGQRLVFDERTRAYKKLVDFRGTANELGSRVLDCLKISKLSPEKLES 313

Query: 445  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 504
            KDL+YQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 505  LQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD 564
            LQISEHLSSWNMKKLSTSCYL LVEKGEIFVRREGRLVRVR+VLEL+MGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMGDTIYRPLADGD 433

Query: 565  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 624
            VVLVNRPPSIHQHSLIALSV++LPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  VVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 625  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLP 684
            E+RELV+LDRQL+NGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQ+QQLQM ALHQLLP
Sbjct: 494  ELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQLQMFALHQLLP 553

Query: 685  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNL 744
            PAI+KAP  R+CAWTGKQLFS  LPPDFDYSSPSH V I+NGEL+SSEGSYWLRD+GRN 
Sbjct: 554  PAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEGSYWLRDTGRNP 613

Query: 745  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 804
            FQALIEHCEG+TL+YLH AQ VLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGRTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 673

Query: 805  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 864
            EAEETCNL QLMVD+HKD+LT DDE NQHVLSI V+ LSYEKQKSAALNQASVDAFK+VF
Sbjct: 674  EAEETCNLIQLMVDSHKDVLTGDDEGNQHVLSIEVEHLSYEKQKSAALNQASVDAFKRVF 733

Query: 865  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 924
            R+IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSF LPHKL+CS+
Sbjct: 734  REIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFGLPHKLSCSS 793

Query: 925  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 984
            WNSQKMPRY QKDGL DRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIQKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 985  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGG 1044
            GTLTRKLTFLMRDIY AYD TVRNAYGNQLVQFSYD D P S SNELD ENNN + DIGG
Sbjct: 854  GTLTRKLTFLMRDIYNAYDRTVRNAYGNQLVQFSYDTDSPMSTSNELDGENNNTNRDIGG 913

Query: 1045 HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 1104
             PVGSLAACA+SEAAYSALDQPISLLE SPLLNLK+VLECGSKRNS KQTFSLFL EKLS
Sbjct: 914  QPVGSLAACALSEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQTFSLFLLEKLS 973

Query: 1105 KRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1164
            KRSYGFEYGALGVKNHLERV+FKDIVS+VMIIF+P+PSRK+HFSPWVCHFHVCKEILKKR
Sbjct: 974  KRSYGFEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCHFHVCKEILKKR 1033

Query: 1165 RLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTK 1224
            RLK++SVIHSLNMRCDSVRQE ++NLP L I TQDC LADS REDGDTVCLTVTIAENTK
Sbjct: 1034 RLKISSVIHSLNMRCDSVRQEAKINLPFLHISTQDCSLADSSREDGDTVCLTVTIAENTK 1093

Query: 1225 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHC-NHGELYLRVTMSG 1284
            NSFLQLDFIQDLLIHFLLGTVIRGFAEID+VDI+WNDRPKVPK HC +HGELYLRVTMSG
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSHGELYLRVTMSG 1153

Query: 1285 EGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGK 1344
            EGNSRFWATLMN+CLP+MDLIDWSRSHPDN HS C+AYGIDSG  YFLNSLESATLDIGK
Sbjct: 1154 EGNSRFWATLMNHCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLNSLESATLDIGK 1213

Query: 1345 TIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAG 1404
            TIR EHLLLVAN+LSATGEFVGLNVKG+S QREHALVKTPFMQACFSSPGA FVKAAKAG
Sbjct: 1214 TIRHEHLLLVANTLSATGEFVGLNVKGVSRQREHALVKTPFMQACFSSPGASFVKAAKAG 1273

Query: 1405 IKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKI 1464
            IKD+LSGSLDALAWG+IPS+GTGGQFDILYSG+GHELNKPVDVYNLLG Q ICEK N KI
Sbjct: 1274 IKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELNKPVDVYNLLGSQGICEKPNVKI 1333

Query: 1465 ESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILH 1524
            ESLDKN I EKYSA +V KNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLS  LR+IL 
Sbjct: 1334 ESLDKNTIYEKYSA-VVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSHTLRSILR 1393

Query: 1525 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTT 1574
            KYSLNERLNEVDKSTLMMALYFHP RDEKIGVGAQDIKVG+HSKY NTRCF+L+RSDGTT
Sbjct: 1394 KYSLNERLNEVDKSTLMMALYFHPQRDEKIGVGAQDIKVGSHSKYSNTRCFILVRSDGTT 1453

[Close]

BLAST of ClCG10G003630 vs. ExPASy TrEMBL
Match: A0A6J1KSL8 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111498320 PE=4 SV=1)

HSP 1 Score: 2599.7 bits (6737), Expect = 0.0e+00
Identity = 1281/1462 (87.62%), Postives = 1354/1462 (92.61%), Query Frame = 0


Query: 145  MIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQC 204
            M HM+DEQD EL IPSG++ G+NFSVSTQQD ENIAV+ ++A+ EVSDPKLGLPNPSYQC
Sbjct: 14   MNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVSDPKLGLPNPSYQC 73

Query: 205  TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 264
            TTCGAS LK CEGHFG IKFPYTIIHPYFLSEVAQVLNKVCPGCKSIR+ELWGKVEDPTS
Sbjct: 74   TTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRRELWGKVEDPTS 133

Query: 265  EYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 324
            ++HRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQKRVA+GGLP 
Sbjct: 134  DFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVARGGLPP 193

Query: 325  DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTP 384
            DYWNFIPKDEQQEESYCRPNRK+LTHAQVHYLLKDIDPKFLKKFV A DSLFLNSFPVTP
Sbjct: 194  DYWNFIPKDEQQEESYCRPNRKVLTHAQVHYLLKDIDPKFLKKFVSATDSLFLNSFPVTP 253

Query: 385  NSHRVTEMTHSFSNGQRLIF--------------------------------LSPEKLQS 444
            N HRVTEMTHSFS+GQRL+F                                LSPEKL+S
Sbjct: 254  NCHRVTEMTHSFSSGQRLVFDERTRAYKKLVDFRGTANELGSRVLDCLKISKLSPEKLES 313

Query: 445  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 504
            KDL+YQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 505  LQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD 564
            LQISEHLSSWNMKKLSTSCYL LVEKGEIFVRREGRLVRVR+VLEL+MGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMGDTIYRPLADGD 433

Query: 565  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 624
            VVLVNRPPSIHQHSLIALSV++LPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  VVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 625  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLP 684
            E+RELV+LDRQL+NGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQ+QQLQM ALHQLLP
Sbjct: 494  ELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQLQMFALHQLLP 553

Query: 685  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNL 744
            PAI+KAP  R+CAWTGKQLFS  LPPDFDYSSPSH V I+NGEL+SSEGSYWLRD+GRN 
Sbjct: 554  PAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEGSYWLRDTGRNP 613

Query: 745  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 804
            FQALIEHCEG TL+YLH AQ VLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGMTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 673

Query: 805  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 864
            EAEETCNL QLMVD+HKD LT DDE NQHVLSI V+ LSYEKQKSAALNQASVDAFK+VF
Sbjct: 674  EAEETCNLIQLMVDSHKDALTGDDEGNQHVLSIEVEHLSYEKQKSAALNQASVDAFKRVF 733

Query: 865  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 924
            R+IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSF LPHKL+CS+
Sbjct: 734  REIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFGLPHKLSCSS 793

Query: 925  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 984
            WNSQKMPRY +KDGL DRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIRKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 985  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGG 1044
            GTLTRKLTFLMRDIY AYDGTVRNAYGNQLVQFSYD D PTSISNELD ENNN + DIGG
Sbjct: 854  GTLTRKLTFLMRDIYNAYDGTVRNAYGNQLVQFSYDTDSPTSISNELDGENNNTNRDIGG 913

Query: 1045 HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 1104
             PVGSLAACA+SEAAYSALDQPISLLE SPLLNLK+VLECGSKRNS KQ FSLFL EKLS
Sbjct: 914  QPVGSLAACAISEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQIFSLFLLEKLS 973

Query: 1105 KRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1164
            KRSYG+EYGALGVKNHLERV+FKDIVS+VMIIF+P+PSRK+HFSPWVCHFHVCKEILKKR
Sbjct: 974  KRSYGYEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCHFHVCKEILKKR 1033

Query: 1165 RLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTK 1224
            RLK++SVIHSLNMRCDS+RQE ++NLP L I TQDC LADS REDGDTVCLTVTIAENTK
Sbjct: 1034 RLKISSVIHSLNMRCDSMRQEAKINLPFLHISTQDCSLADSSREDGDTVCLTVTIAENTK 1093

Query: 1225 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHC-NHGELYLRVTMSG 1284
            NSFLQLDFIQDLLIHFLLGTVIRGFAEID+VDI+WNDRPKVPK HC +HGELYLRVTMSG
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSHGELYLRVTMSG 1153

Query: 1285 EGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGK 1344
            EGNSRFWATLMNNCLP+MDLIDWSRSHPDN HS C+AYGIDSG  YFLNSLESATLDIGK
Sbjct: 1154 EGNSRFWATLMNNCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLNSLESATLDIGK 1213

Query: 1345 TIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAG 1404
            TIR EHLLLVAN+LSATGEFVGLNVKG+S QREHALVKTPFMQACFSSPGA FVKAAKAG
Sbjct: 1214 TIRHEHLLLVANTLSATGEFVGLNVKGVSRQREHALVKTPFMQACFSSPGASFVKAAKAG 1273

Query: 1405 IKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKI 1464
            IKD+LSGSLDALAWG+IPS+GTGGQFDILYSG+GHEL+KPVDVYNLLG Q ICEK N K+
Sbjct: 1274 IKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELSKPVDVYNLLGSQGICEKPNVKM 1333

Query: 1465 ESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILH 1524
            ESLDKN I EKYSA +V KNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLS  LR+IL 
Sbjct: 1334 ESLDKNTIYEKYSA-VVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSHTLRSILR 1393

Query: 1525 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTT 1574
            KYSLNERLNEVDKSTLMMALYFHP RDEKIGVGAQDIKVG+HSKY NTRCF+L+RSDGTT
Sbjct: 1394 KYSLNERLNEVDKSTLMMALYFHPQRDEKIGVGAQDIKVGSHSKYSNTRCFILVRSDGTT 1453

[Close]

BLAST of ClCG10G003630 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 1425.6 bits (3689), Expect = 0.0e+00
Identity = 753/1466 (51.36%), Postives = 994/1466 (67.80%), Query Frame = 0


Query: 148  MDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTC 207
            M+D+ + EL +P G +T I FS+S   D + ++V+ V+A ++V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 208  GASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYH 267
            G+   K CEGHFGVI F Y+II+PYFL EVA +LNK+CPGCK IR++ +   ED      
Sbjct: 61   GSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITED------ 120

Query: 268  RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYW 327
            +P+ CRYC  +L   YP M+F+++T ++F++S I+VEV E    K +KR     LP DYW
Sbjct: 121  QPERCRYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYW 180

Query: 328  NFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSH 387
            +F+P+D   +ES  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +
Sbjct: 181  SFLPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGY 240

Query: 388  RVTEMTHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS-- 447
            RVTE+ H F NG RLIF    ++  K                + +   +   +T +SS  
Sbjct: 241  RVTEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKD 300

Query: 448  --------------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQI 507
                           GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+
Sbjct: 301  SANPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQV 360

Query: 508  SEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVL 567
            SEHL+  N ++L TS    L++  E+ VRR  RLV ++ V +L  GD I+R L DGD VL
Sbjct: 361  SEHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVL 420

Query: 568  VNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVR 627
            +NRPPSIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ 
Sbjct: 421  MNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELD 480

Query: 628  ELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVSLNLFQMQQLQMLALHQLLPPA 687
            ELV+LD+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL PPA
Sbjct: 481  ELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPA 540

Query: 688  ILKA-PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELIS-SEGSYWLRDSGRNL 747
            I+KA P      WTG QLF  L PP FDY+ P + V++ NGEL+S SEGS WLRD   N 
Sbjct: 541  IIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNF 600

Query: 748  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 807
             + L++H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+
Sbjct: 601  IERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLR 660

Query: 808  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 867
            EAE+ CN +QLMV++ +D L  + ED +      + R  YE+QKSA L++ +V AFK  +
Sbjct: 661  EAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAY 720

Query: 868  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 927
            RD+Q L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+A
Sbjct: 721  RDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAA 780

Query: 928  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 987
            WN    P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++P
Sbjct: 781  WNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLP 840

Query: 988  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGG 1047
            GTL+R+L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G
Sbjct: 841  GTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITG 900

Query: 1048 HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 1107
              +GSL+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LS
Sbjct: 901  EALGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLS 960

Query: 1108 KRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1167
            K+ +GFEYG+L +KNHLE++ F +IVS  MIIFSP  + K   SPWVCHFH+ +++LK++
Sbjct: 961  KKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRK 1020

Query: 1168 RLKMNSVIHSLNMRCDSVRQEGRMNLPSLQI-ITQDCPLADSLREDGDTVCLTVTIAENT 1227
            +L   SV+ SLN +  S  +E ++++  L I  T  C   D   +D D VC+TVT+ E +
Sbjct: 1021 QLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKD-DNVCITVTVVEAS 1080

Query: 1228 KNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNH--GELYLRVTM 1287
            K+S L+LD I+ +LI FLL + ++G   I +V+I W DRPK PK + NH  GELYL+VTM
Sbjct: 1081 KHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTM 1140

Query: 1288 SGE-GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD 1347
             G+ G    W  L+  CLP+MD+IDW RSHPDN    C  YGID+G   F+ +LESA  D
Sbjct: 1141 YGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSD 1200

Query: 1348 IGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAA 1407
             GK I  EHLLLVA+SLS TGEFV LN KG S QR+      PF QACFSSP  CF+KAA
Sbjct: 1201 TGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAA 1260

Query: 1408 KAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQN 1467
            K G++D+L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N
Sbjct: 1261 KEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTN 1320

Query: 1468 AKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFAL 1527
            +  +       S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L
Sbjct: 1321 SAPK-------SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSL 1380

Query: 1528 RTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIR 1573
            + ILH Y +NE LNE D+  + M L  HP+  EKIG G + I+V   SK+ ++ CF ++R
Sbjct: 1381 KRILHSYEINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVR 1431

[Close]

BLAST of ClCG10G003630 vs. TAIR 10
Match: AT1G63020.2 (nuclear RNA polymerase D1A )

HSP 1 Score: 1425.6 bits (3689), Expect = 0.0e+00
Identity = 753/1466 (51.36%), Postives = 994/1466 (67.80%), Query Frame = 0


Query: 148  MDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTC 207
            M+D+ + EL +P G +T I FS+S   D + ++V+ V+A ++V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 208  GASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYH 267
            G+   K CEGHFGVI F Y+II+PYFL EVA +LNK+CPGCK IR++ +   ED      
Sbjct: 61   GSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITED------ 120

Query: 268  RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYW 327
            +P+ CRYC  +L   YP M+F+++T ++F++S I+VEV E    K +KR     LP DYW
Sbjct: 121  QPERCRYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYW 180

Query: 328  NFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSH 387
            +F+P+D   +ES  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +
Sbjct: 181  SFLPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGY 240

Query: 388  RVTEMTHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS-- 447
            RVTE+ H F NG RLIF    ++  K                + +   +   +T +SS  
Sbjct: 241  RVTEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKD 300

Query: 448  --------------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQI 507
                           GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+
Sbjct: 301  SANPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQV 360

Query: 508  SEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVL 567
            SEHL+  N ++L TS    L++  E+ VRR  RLV ++ V +L  GD I+R L DGD VL
Sbjct: 361  SEHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVL 420

Query: 568  VNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVR 627
            +NRPPSIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ 
Sbjct: 421  MNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELD 480

Query: 628  ELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVSLNLFQMQQLQMLALHQLLPPA 687
            ELV+LD+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL PPA
Sbjct: 481  ELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPA 540

Query: 688  ILKA-PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELIS-SEGSYWLRDSGRNL 747
            I+KA P      WTG QLF  L PP FDY+ P + V++ NGEL+S SEGS WLRD   N 
Sbjct: 541  IIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNF 600

Query: 748  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 807
             + L++H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+
Sbjct: 601  IERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLR 660

Query: 808  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 867
            EAE+ CN +QLMV++ +D L  + ED +      + R  YE+QKSA L++ +V AFK  +
Sbjct: 661  EAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAY 720

Query: 868  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 927
            RD+Q L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+A
Sbjct: 721  RDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAA 780

Query: 928  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 987
            WN    P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++P
Sbjct: 781  WNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLP 840

Query: 988  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGG 1047
            GTL+R+L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G
Sbjct: 841  GTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITG 900

Query: 1048 HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 1107
              +GSL+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LS
Sbjct: 901  EALGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLS 960

Query: 1108 KRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1167
            K+ +GFEYG+L +KNHLE++ F +IVS  MIIFSP  + K   SPWVCHFH+ +++LK++
Sbjct: 961  KKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRK 1020

Query: 1168 RLKMNSVIHSLNMRCDSVRQEGRMNLPSLQI-ITQDCPLADSLREDGDTVCLTVTIAENT 1227
            +L   SV+ SLN +  S  +E ++++  L I  T  C   D   +D D VC+TVT+ E +
Sbjct: 1021 QLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKD-DNVCITVTVVEAS 1080

Query: 1228 KNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNH--GELYLRVTM 1287
            K+S L+LD I+ +LI FLL + ++G   I +V+I W DRPK PK + NH  GELYL+VTM
Sbjct: 1081 KHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTM 1140

Query: 1288 SGE-GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD 1347
             G+ G    W  L+  CLP+MD+IDW RSHPDN    C  YGID+G   F+ +LESA  D
Sbjct: 1141 YGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSD 1200

Query: 1348 IGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAA 1407
             GK I  EHLLLVA+SLS TGEFV LN KG S QR+      PF QACFSSP  CF+KAA
Sbjct: 1201 TGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAA 1260

Query: 1408 KAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQN 1467
            K G++D+L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N
Sbjct: 1261 KEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTN 1320

Query: 1468 AKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFAL 1527
            +  +       S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L
Sbjct: 1321 SAPK-------SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSL 1380

Query: 1528 RTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIR 1573
            + ILH Y +NE LNE D+  + M L  HP+  EKIG G + I+V   SK+ ++ CF ++R
Sbjct: 1381 KRILHSYEINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVR 1431

[Close]

BLAST of ClCG10G003630 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 391.3 bits (1004), Expect = 3.5e-108
Identity = 362/1371 (26.40%), Postives = 594/1371 (43.33%), Query Frame = 0


Query: 151  EQDGELPIPSGLVTGINFSVSTQQD--TENIAVMTVDASSEVSDPKLGLPNPSYQCTTCG 210
            E++    I  G + GI F++++  +   ++I+   ++  S++++  LGLP    +C +CG
Sbjct: 2    EEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCG 61

Query: 211  ASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHR 270
            A+    CEGHFG I+ P  I HP  ++E+ Q+L+ +C  C  I+               +
Sbjct: 62   ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIK---------------K 121

Query: 271  PKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY--QKRVAKGGLPSDY 330
             KG     G L D       +L      + S I ++ + +    Y   K  ++  L    
Sbjct: 122  AKGTS---GGLAD-------RLLGVCCEEASQISIKDRASDGASYLELKLPSRSRLQPGC 181

Query: 331  WNFIPK-DEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKF-----VPAIDSLFLNSF 390
            WNF+ +   +    Y RP    L   +V  +L+ I  +  KK      +P  +   L   
Sbjct: 182  WNFLERYGYRYGSDYTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQ-EGYILEYL 241

Query: 391  PVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLV------------------------ 450
            PV PN   V E +  FS     + + P +++ KD++                        
Sbjct: 242  PVPPNCLSVPEASDGFST----MSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEAS 301

Query: 451  -------------------------YQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMV 510
                                     Y   KI D+++S      ++ + + K S    R V
Sbjct: 302  EMFRVVDTYLQVRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSV 361

Query: 511  VVGDPNIELSEIGIPCHVAERLQISEHLSSWN----MKKLSTSCYLHLVEKGEIFVRREG 570
            + GD    ++E+GIP  +A+R+   E +S  N     K +     L   +    +  R+G
Sbjct: 362  ITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDG 421

Query: 571  RLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLC 630
                 +   EL  G  ++R + DGDVV +NRPP+ H+HSL AL V  +   + + +NPL 
Sbjct: 422  S----KGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV-YVHEDNTVKINPLM 481

Query: 631  CSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI 690
            CSP   DFDGDC+H + PQSL A+ EV EL S+++QL++  +G+ +L +  DSL +  ++
Sbjct: 482  CSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM 541

Query: 691  MEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSH 750
            +E  V L+    QQL M     L PPA+ K+      AWT  Q+     P     S    
Sbjct: 542  LE-RVFLDKATAQQLAMYGSLSLPPPALRKSS-KSGPAWTVFQILQLAFPERL--SCKGD 601

Query: 751  CVLIENGELISSEGSYWLRDSGRN--LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLS 810
              L++  +L+  +       S  N  +    +E    +TL +    Q +L E L   G S
Sbjct: 602  RFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFS 661

Query: 811  VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSI 870
            +SL DL     S S  +M  D+   L   E +  + +L +    ++  E+          
Sbjct: 662  LSLEDL-----SMSRADM--DVIHNLIIREISPMVSRLRLSYRDELQLEN---------- 721

Query: 871  AVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLV 930
                 S  K K  A N      F      I+NL+     K NS +T           KLV
Sbjct: 722  -----SIHKVKEVAAN------FMLKSYSIRNLI---DIKSNSAIT-----------KLV 781

Query: 931  QHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFL 990
            Q +  LGLQ S     ++       + +  +K            R SS   + +V+  F 
Sbjct: 782  QQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKY----------GRISSSGDFGIVKGCFF 841

Query: 991  SGLNPFECFAHSVTNRD--SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLV 1050
             GL+P+E  AHS+  R+     S     PGTL + L  ++RDI    DGTVRN   N ++
Sbjct: 842  HGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVI 901

Query: 1051 QFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPL 1110
            QF Y +          DSE  ++     G PVG LAA AMS  AY A      +L++SP 
Sbjct: 902  QFKYGV----------DSERGHQGLFEAGEPVGVLAATAMSNPAYKA------VLDSSPN 961

Query: 1111 LN-----LKRVLEC--GSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKD 1170
             N     +K VL C    +  +  +   L+L+E    + +  E  A  V+N L +V  KD
Sbjct: 962  SNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKD 1021

Query: 1171 IVSNVMIIFSPQPSRKKHFSPWVC---HFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQE 1230
                 ++ +  QP+  + F    C   H H+ K +L+   + M  +        +S+ Q+
Sbjct: 1022 TAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQK 1081

Query: 1231 GRMNLP-----SLQIITQDCPLADSLREDG-DTVCLTVTIAENTKNSFLQLDFIQDLLIH 1290
             +         +   +++ C   D     G D  CLT +      +    LD + + +  
Sbjct: 1082 KKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNATDPDLERTLDVLCNTVYP 1141

Query: 1291 FLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNH----GELYLRVTMSGEG---NSRFWAT 1350
             LL  VI+G + I   +I WN       +   H    GE  L VT+       +   W  
Sbjct: 1142 VLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRV 1201

Query: 1351 LMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLL 1410
            ++++CL V+ LID  RS P +   +    G+   ++  +  L ++   + K +  EH++L
Sbjct: 1202 VIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIIL 1259

Query: 1411 VANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSL 1430
            +AN+++ +G  +G N  G         +K PF +A   +P  CF KAA+    D+LS  +
Sbjct: 1262 LANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVV 1259

HSP 2 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 37/117 (31.62%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1460 KKLDSVSKSILREFLTLNDIQKLSFALRTILH--KYSLNERLNEVDKS-TLMMALYFHPH 1519
            ++LDS +     E   L+D++ +   LR I+H   Y   + +++ DK+  L   L FHP 
Sbjct: 1727 QRLDSFTS---EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQ 1786

Query: 1520 RDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVK 1574
            ++ K+G G   I V  H+ + ++RCF ++ +DG  +DFSY K +   L    P R +
Sbjct: 1787 KETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAE 1840

[Close]

BLAST of ClCG10G003630 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 187.6 bits (475), Expect = 7.8e-47
Identity = 229/954 (24.00%), Postives = 399/954 (41.82%), Query Frame = 0


Query: 157  PIPSGLVTGINFSVSTQQDTENIAVMTVDASSE----------VSDPKLGLPNPSYQCTT 216
            P     V  + F + +  +   ++V+ V+ S            +SD +LG  +   +C T
Sbjct: 9    PAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCET 68

Query: 217  CGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI---------RQELWG 276
            C A ++  C GHFG ++    + H  F+  V  ++  VC  C  I         +Q +  
Sbjct: 69   CMA-NMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQAM-- 128

Query: 277  KVEDPTSEYHR----PKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKE------ 336
            K+++P +   +     K    C G   D    ++   ST +  KKS      ++      
Sbjct: 129  KIKNPKNRLKKILDACKNKTKCDGG--DDIDDVQ-SHSTDEPVKKSRGGCGAQQPKLTIE 188

Query: 337  --NMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFL 396
               M  +Y+ +  K   P       P + +Q     R    +   +     L   +PKF 
Sbjct: 189  GMKMIAEYKIQRKKNDEPDQLPE--PAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 248

Query: 397  KKFVPAIDSLFLNSFPVTPN------SHRVTEMTHSFS--------------NGQRLIFL 456
            +     ++ L +   PV P+      S    ++TH  +              NG     +
Sbjct: 249  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 308

Query: 457  S--PEKLQSKDLVYQQKKI--KDTATSSYGLRWIKDV--------------VLGKRSDHC 516
            S   + LQ     Y   ++  +  AT   G R IK +              ++GKR D  
Sbjct: 309  SEFTQLLQFHIATYFDNELPGQPRATQKSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFS 368

Query: 517  FRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKG-------- 576
             R V+  DP I + E+G+P  +A  L   E ++ +N+++L       LV+ G        
Sbjct: 369  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLK-----ELVDYGPHPPPGKT 428

Query: 577  --EIFVRREGRLVRVRNVLE-----LNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSV 636
              +  +R +G+ + +R + +     L +G  + R L DGD VL NR PS+H+ S++   +
Sbjct: 429  GAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRI 488

Query: 637  KLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRN 696
            +++P S+   LN    SP+  DFDGD ++ +VPQS E R EV EL+ + + +++ Q+ R 
Sbjct: 489  RIMPYST-FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRP 548

Query: 697  LLSLSHDSLTAAHLI--MEDGVSLNLFQMQQLQMLALHQLLP-PAILKAPLLRNCAWTGK 756
            ++ +  D+L     I   +  +  ++F    +        +P PAILK   L    WTGK
Sbjct: 549  VMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPL----WTGK 608

Query: 757  QLFSTLLPPDFD--------------YSSPSHC-VLIENGELISSE-GSYWLRDSGRNLF 816
            Q+F+ ++P   +              + +P    V IE GEL++       L  S  +L 
Sbjct: 609  QVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLV 668

Query: 817  QALIEHC-EGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 876
              + E         +L   Q ++  WL   G ++ +       D+ +  + M+ I     
Sbjct: 669  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIG------DTIADSSTMEKI----- 728

Query: 877  EAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVF 936
              E   N K     A KD++ +              R ++E + +  LN+A  DA     
Sbjct: 729  -NETISNAK----TAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQ 788

Query: 937  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 996
            + +         + N+L  M  AGSKG+ + + Q + C+G Q        ++  K     
Sbjct: 789  KSL--------AETNNLKAMVTAGSKGSFINISQMTACVGQQ--------NVEGKRIPFG 848

Query: 997  WNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEV- 1002
            ++ + +P +T+ D  P+          VE+S+L GL P E F H++  R+       +  
Sbjct: 849  FDGRTLPHFTKDDYGPESR------GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 904

[Close]

BLAST of ClCG10G003630 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-36
Identity = 258/1067 (24.18%), Postives = 424/1067 (39.74%), Query Frame = 0


Query: 441  GKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEK-- 500
            GKR +   R V+  DPN++++E+GIP  +A+ L   E +S  N++KL   C  +   K  
Sbjct: 359  GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL-RQCVRNGPNKYP 418

Query: 501  GEIFVR----REGRLV---RVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALS 560
            G   VR        LV   R R   EL +G  + R L +GDVVL NR PS+H+ S++   
Sbjct: 419  GARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHR 478

Query: 561  VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGR 620
             +++P  + L  N   C+P+  DFDGD ++ +VPQ+ EAR E   L+ +   L   ++G 
Sbjct: 479  ARIMPWRT-LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 538

Query: 621  NLLSLSHDSLTAAHLIME-----DGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAW 680
             L++ + D LT++ LI       D  + +L        +    L  P ILK   L    W
Sbjct: 539  ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIEL----W 598

Query: 681  TGKQLFSTLLPP-------------DFDYSSPSH-----------CVLIENGELISSE-G 740
            TGKQ+FS LL P             + ++    H            V   N ELIS + G
Sbjct: 599  TGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLG 658

Query: 741  SYWLRDSGRN-LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSH 800
               L +  ++ L+  L+        DY   A  V    L+       LS  ++ +  +S 
Sbjct: 659  KATLGNGNKDGLYSILLR-------DYNSHAAAVCMNRLA------KLSARWIGIHGFSI 718

Query: 801  KNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAAL 860
               +DD+  G + ++E  +  Q   D     + E +  N  + +      S E + +  L
Sbjct: 719  G--IDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGIL 778

Query: 861  NQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTL 920
            N       K     +           NS L M + GSKG+ + + Q   C+G Q      
Sbjct: 779  NTIREATGKACMSGLH--------WRNSPLIMSQCGSKGSPINISQMVACVGQQ------ 838

Query: 921  SFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIP--------YAVVESSFLSGLNPFE 980
                         N  + P     DG  DR+    P           V +SF SGL   E
Sbjct: 839  -----------TVNGHRAP-----DGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATE 898

Query: 981  CFAHSVTNRDSSFSDNAEVPGT--LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDID 1040
             F H++  R+       +   T  ++R+L   + D+   YD TVRNA G  ++QF+Y  D
Sbjct: 899  FFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASG-CILQFTYGDD 958

Query: 1041 ----------------------------RPTSISNELDSENNNR--DHDIGGHPVGSLAA 1100
                                         P S    L SE  ++  + ++  H    +  
Sbjct: 959  GMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVC- 1018

Query: 1101 CAMSEAAYSALDQPISLL---EASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYG 1160
               ++A   +L + +SLL    ASP   L +      K+        +F   +  K   G
Sbjct: 1019 ---TDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFRYRE-KKIEAG 1078

Query: 1161 FEYGALGVKN-------------HLERVMFKDIVSNVMIIFSPQPSRKKHFSPWV-CHFH 1220
               G +G ++             H   V   +I   V  I     + K   +P +     
Sbjct: 1079 TAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAELE 1138

Query: 1221 VCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCL 1280
               E+   R +K      +L    +S+         S++II     L + + E+    CL
Sbjct: 1139 NPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRII-----LDNKIIEE---ACL 1198

Query: 1281 TVTIAENTKNSFLQLDFIQ--DLLIHFL-LGTVIRGFAEIDRVDIAWNDRPKV-PKLHCN 1340
            ++T   + KNS L+   I+  D  I  L  G  I    +  R     ++   V P +  N
Sbjct: 1199 SIT-PWSVKNSILKTPRIKLNDNDIRVLDTGLDITPVVDKSRAHFNLHNLKNVLPNIIVN 1258

Query: 1341 HGELYLRVTMSG--------EGNSRFWATLM--NNCLPVMDL--IDWSRSHPDNTHSLCL 1395
              +   RV ++         +G ++ W   +   N L VM    I+   +  +N   +  
Sbjct: 1259 GIKTVERVVVAEDMDKSKQIDGKTK-WKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSK 1318

The following BLAST results are available for this feature:

BLAST of ClCG10G003630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905038.1	0.0e+00	94.13	DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_0389...	[more]
XP_038905042.1	0.0e+00	94.25	DNA-directed RNA polymerase IV subunit 1 isoform X2 [Benincasa hispida]	[more]
TYK19428.1	0.0e+00	91.48	DNA-directed RNA polymerase IV subunit 1 [Cucumis melo var. makuwa]	[more]
XP_011650447.1	0.0e+00	92.41	DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >XP_011650...	[more]
XP_038905043.1	0.0e+00	94.34	DNA-directed RNA polymerase IV subunit 1 isoform X3 [Benincasa hispida] >XP_0389...	[more]

BLAST of ClCG10G003630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQ02	0.0e+00	51.36	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
Q5D869	5.0e-107	26.40	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
P36594	1.2e-57	24.09	DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain...	[more]
Q75A34	1.5e-50	25.36	DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii (strain ATCC 1089...	[more]
P11414	1.6e-49	24.28	DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=PO...	[more]

BLAST of ClCG10G003630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D780	0.0e+00	91.48	DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0L2L4	0.0e+00	92.41	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_3G039340 PE=4 SV=1	[more]
A0A1S4DY39	0.0e+00	91.79	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103490982 PE=4 SV=1	[more]
A0A6J1FKU9	0.0e+00	87.76	DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444908 PE=4 S...	[more]
A0A6J1KSL8	0.0e+00	87.62	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111498320 PE=4 SV=...	[more]

BLAST of ClCG10G003630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63020.1	0.0e+00	51.36	nuclear RNA polymerase D1A	[more]
AT1G63020.2	0.0e+00	51.36	nuclear RNA polymerase D1A	[more]
AT2G40030.1	3.5e-108	26.40	nuclear RNA polymerase D1B	[more]
AT4G35800.1	7.8e-47	24.00	RNA polymerase II large subunit	[more]
AT5G60040.1	2.1e-36	24.18	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 373..628 e-value: 1.9E-26 score: 103.8
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 774..928 e-value: 4.5E-11 score: 44.9
None	No IPR available	GENE3D	2.40.40.20		coord: 436..607 e-value: 2.0E-41 score: 143.9
None	No IPR available	GENE3D	3.10.450.40		coord: 1471..1562 e-value: 3.1E-24 score: 87.3
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 474..526 e-value: 2.0E-41 score: 143.9
None	No IPR available	PFAM	PF11523	DUF3223	coord: 1488..1560 e-value: 1.5E-25 score: 89.7
None	No IPR available	PANTHER	PTHR19376:SF36	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1	coord: 148..1474
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 148..1474
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 159..1400
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 815..878 e-value: 9.1E-11 score: 41.7
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 604..751 e-value: 4.9E-14 score: 52.6
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 608..756 e-value: 4.8E-21 score: 77.1
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 159..258 e-value: 1.9E-12 score: 49.0
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 441..599 e-value: 1.5E-33 score: 116.3
IPR040403	DNA-directed RNA polymerase IV/V subunit 1, N-terminal	CDD	cd10506	RNAP_IV_RPD1_N	coord: 171..975 e-value: 0.0 score: 1241.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G003630.1	ClCG10G003630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding