
ClCG10G003175 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCTGGCAGCTGCTTCCACCTTCCGCTACAGTCTCCGCCGCAACGATGGGGCCGATCAATCTCTCCGAATCAGATTGGGGTTTTTGTGGCGTTTACTCTCCCGATCGCCGTCCGCCGGACTTCCGTACGAAATCCTCCGCGAAATTTCCTCGAGTTCAATGCGAGAGACTACATTCCGTCTCTATCTGCGAGAGCTCGAAGATCCATGGCTATGCCAAGCTTACATCGCACAATTGCTGTCCTCCTTGGACCTCGGCCCCGTAACCTGTGAAATAATCGGTCGGAAGATAACATCGGTCATCGTTGAAATATTGGAATCCGGAAACTACGATACGAAGTTCCAGATCACGGCGGAAATCGATCACGTCCAGATGTTCTGGGCGGAGGAGGAGCGGAGTTCGGTTCCGGTGGAGAGTGGCGAGTGGCGCGGTATTGTGGTGGAGGAGAGAGTGGTTTTGGAGGAAGCTCCGGCGAGGAGAATGGCGGTGGAGAGTGCGAGAGAGAGGTTGGAGATGGAGAAATTGGATGGGTTTGAGAGAGCAGAGTTGGGAGATTGCTGTGTTTGTTACGAAGAACTGAATGGTGGGAGGGAGAAGTTGAGTACAATCCGGTGTGGCCATGTCTATCATACATCCTGCATCCTCGCTTGGGTTCAAAGGAGCAACTCTTGTCCTTTGTGTAGAAGGGAAATAGAATTTGGAATTTAA ATGTCTCTGGCAGCTGCTTCCACCTTCCGCTACAGTCTCCGCCGCAACGATGGGGCCGATCAATCTCTCCGAATCAGATTGGGGTTTTTGTGGCGTTTACTCTCCCGATCGCCGTCCGCCGGACTTCCGTACGAAATCCTCCGCGAAATTTCCTCGAGTTCAATGCGAGAGACTACATTCCGTCTCTATCTGCGAGAGCTCGAAGATCCATGGCTATGCCAAGCTTACATCGCACAATTGCTGTCCTCCTTGGACCTCGGCCCCGTAACCTGTGAAATAATCGGTCGGAAGATAACATCGGTCATCGTTGAAATATTGGAATCCGGAAACTACGATACGAAGTTCCAGATCACGGCGGAAATCGATCACGTCCAGATGTTCTGGGCGGAGGAGGAGCGGAGTTCGGTTCCGGTGGAGAGTGGCGAGTGGCGCGGTATTGTGGTGGAGGAGAGAGTGGTTTTGGAGGAAGCTCCGGCGAGGAGAATGGCGGTGGAGAGTGCGAGAGAGAGGTTGGAGATGGAGAAATTGGATGGGTTTGAGAGAGCAGAGTTGGGAGATTGCTGTGTTTGTTACGAAGAACTGAATGGTGGGAGGGAGAAGTTGAGTACAATCCGGTGTGGCCATGTCTATCATACATCCTGCATCCTCGCTTGGGTTCAAAGGAGCAACTCTTGTCCTTTGTGTAGAAGGGAAATAGAATTTGGAATTTAA ATGTCTCTGGCAGCTGCTTCCACCTTCCGCTACAGTCTCCGCCGCAACGATGGGGCCGATCAATCTCTCCGAATCAGATTGGGGTTTTTGTGGCGTTTACTCTCCCGATCGCCGTCCGCCGGACTTCCGTACGAAATCCTCCGCGAAATTTCCTCGAGTTCAATGCGAGAGACTACATTCCGTCTCTATCTGCGAGAGCTCGAAGATCCATGGCTATGCCAAGCTTACATCGCACAATTGCTGTCCTCCTTGGACCTCGGCCCCGTAACCTGTGAAATAATCGGTCGGAAGATAACATCGGTCATCGTTGAAATATTGGAATCCGGAAACTACGATACGAAGTTCCAGATCACGGCGGAAATCGATCACGTCCAGATGTTCTGGGCGGAGGAGGAGCGGAGTTCGGTTCCGGTGGAGAGTGGCGAGTGGCGCGGTATTGTGGTGGAGGAGAGAGTGGTTTTGGAGGAAGCTCCGGCGAGGAGAATGGCGGTGGAGAGTGCGAGAGAGAGGTTGGAGATGGAGAAATTGGATGGGTTTGAGAGAGCAGAGTTGGGAGATTGCTGTGTTTGTTACGAAGAACTGAATGGTGGGAGGGAGAAGTTGAGTACAATCCGGTGTGGCCATGTCTATCATACATCCTGCATCCTCGCTTGGGTTCAAAGGAGCAACTCTTGTCCTTTGTGTAGAAGGGAAATAGAATTTGGAATTTAA MSLAAASTFRYSLRRNDGADQSLRIRLGFLWRLLSRSPSAGLPYEILREISSSSMRETTFRLYLRELEDPWLCQAYIAQLLSSLDLGPVTCEIIGRKITSVIVEILESGNYDTKFQITAEIDHVQMFWAEEERSSVPVESGEWRGIVVEERVVLEEAPARRMAVESARERLEMEKLDGFERAELGDCCVCYEELNGGREKLSTIRCGHVYHTSCILAWVQRSNSCPLCRREIEFGI Homology
BLAST of ClCG10G003175 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida]) HSP 1 Score: 374.4 bits (960), Expect = 7.2e-100 Identity = 185/236 (78.39%), Postives = 202/236 (85.59%), Query Frame = 0
BLAST of ClCG10G003175 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]) HSP 1 Score: 271.2 bits (692), Expect = 8.6e-69 Identity = 139/233 (59.66%), Postives = 170/233 (72.96%), Query Frame = 0
BLAST of ClCG10G003175 vs. NCBI nr
Match: KAE8650076.1 (hypothetical protein Csa_011336 [Cucumis sativus]) HSP 1 Score: 270.0 bits (689), Expect = 1.9e-68 Identity = 148/241 (61.41%), Postives = 176/241 (73.03%), Query Frame = 0
BLAST of ClCG10G003175 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 218.4 bits (555), Expect = 6.6e-53 Identity = 112/233 (48.07%), Postives = 152/233 (65.24%), Query Frame = 0
BLAST of ClCG10G003175 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 215.3 bits (547), Expect = 5.6e-52 Identity = 115/240 (47.92%), Postives = 152/240 (63.33%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 8.8e-08 Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy Swiss-Prot
Match: P90990 (E3 ubiquitin-protein ligase trul-1 OS=Caenorhabditis elegans OX=6239 GN=trul-1 PE=3 SV=3) HSP 1 Score: 58.9 bits (141), Expect = 8.8e-08 Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy Swiss-Prot
Match: Q9ZQF9 (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07 Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07 Identity = 20/52 (38.46%), Postives = 33/52 (63.46%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51 Identity = 120/235 (51.06%), Postives = 153/235 (65.11%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50 Identity = 116/232 (50.00%), Postives = 150/232 (64.66%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50 Identity = 112/232 (48.28%), Postives = 152/232 (65.52%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy TrEMBL
Match: A0A5D3D7E9 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001290 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 2.8e-49 Identity = 122/202 (60.40%), Postives = 144/202 (71.29%), Query Frame = 0
BLAST of ClCG10G003175 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48 Identity = 106/232 (45.69%), Postives = 149/232 (64.22%), Query Frame = 0
BLAST of ClCG10G003175 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 2.2e-09 Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 0
BLAST of ClCG10G003175 vs. TAIR 10
Match: AT5G41440.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.7e-09 Identity = 20/59 (33.90%), Postives = 35/59 (59.32%), Query Frame = 0
BLAST of ClCG10G003175 vs. TAIR 10
Match: AT4G23450.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 4.8e-09 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of ClCG10G003175 vs. TAIR 10
Match: AT4G23450.2 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 4.8e-09 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of ClCG10G003175 vs. TAIR 10
Match: AT4G23450.3 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 4.8e-09 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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