ClCG10G002770 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G002770
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 3266420 .. 3269843 (+)
RNA-Seq Expression	ClCG10G002770
Synteny	ClCG10G002770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGCCTTATTTGCTTCTCATTCTCTTAATCTTCTTGTCTACTTTGCATCCGTGTGATGCTCATCGTCTTCGATTCTTTGAGAGTTTGAGTTCTGTTTCGAGGATTGAACCTCATTCGATCTCTCGAGGGATATGGACACATCCACCGGAGAAAAGTTTTGACAAAAGCAACAATAACAAGGTTTCTTATAAGGAGATTATTGTTGGGATTGAAATATTAAAGGTATATTACATATATTTCATGTCTCCTTTCTTTGTAATTTAGTTCTTAATTACCAGCTAACAATATGGGGGGAGGGGAGTGTCAAGAGACCATATGAACTAAAACCTTTTTTAGATATGTAGACATTTTCATTGACATTTCTATAGTTTGGAAAGAAACTCAACATCAAAATATATGAGGTGATAATATATTTCCCCCATAAATACTGTTATAAACATGTCAACAAACAAAAAAGATATAATTGTATAATGATCAAGAACTTATCTTGTTTAAAAATTTCAATAATTTCCATAATTTCCATGTTTTTTGGTCGAAATATTTATCGATTTCAATATAATATAATTTTTTTTTTAAAAAAAAAAAGTCAACGTAATATCATTTTATCTTTATTTCTATTTACATTTGTATAAACTTGAAATCTCATCATTTTCATTGTCATCAACATTTAATTCTTGGATCACAAGACCAATATATGAATATAGACAACATTTAATTTCTTGGATCATGATGAGTTTATTGATATAGACAAAGGCACATGAATGATAAATGAATGAAAAAATAGATTTTTGAAATATAGTGAGTGACATTATTGGACTTTGGCATTTTAGCAGGGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGAGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCTTAGATATATATAATTATGTAATATTTCTCAAATTTCCTATGAAATATTCAAATATGTTCCAAAAATTAAAGTATTTTTTTTTTTCTTCTTTACATTGGAAAAAGGAAAAATAGAGTATATATATTAAAAAAAAAAAAACTATGTGAGGATTGCCCTGTGATTTAGAAAATATATATATATATATATATATATATTTTATATTCAAAGGGTTTACTATTTATAAAATTTGAGTGAAAAGAAAGTGTTGTATGAGTTGAGAAAAATAGTGAAATTTCAAAGGTGTGAGACCTTATGCATTTTATACCACTCTTTTTGTACAAGTTTAGAAATATAATAATTTGAACTTTTGGCCTCTTAATTGATGATATATATTCTTTAATTAATTGAATTTTTTTTTTTTTTTTTTTGAGTTCAACAACATATGGGATATGTGGAATTTTAACCCCCGACTTTTGGTCAAATTATATACTTTAATCAGCTAAGCAATGCACCGATGAATACAAACTCTTTTGCATTTTTGTCTACCCCAAAGTATCAATTGTGTATAAGAAATTTAGGGTTTGATATATATAGGTGTGACAATTTAATGTGCAAATAAAATGGCTAGATATTCATGTAACTTGGTATAGAAGTTGTGCACTTGTTGATCAAGGTTGATTTAGATTTCACTTTACTAAAACGATTTAATAAATGATTTTATGTTAAATTGTCGGCTAATAAAGTTTAGTGTCAAAATTAATGCATACCTTAAGCCTTAGAGATTGTATAAATTAAAACTTCCAAACTAATAATTACATTAATTAAAATTTCAATTTTCTTTATAAGGGAAATAATTTAAACTCTTTGTTATGTGTATTCTTCTTTAAATGCTCGATACAATAATATTAGAGAAACACACTGAAATCAAATAGGTAGTATTGGCATTTCATCAGTATGAGTGGTTTACATCCTCTCGTTTGTCTCTACTTTACTTGATTTATTTTTAGAAAAAGAAAATCTATCATACCTTTTTAGATATAGAAGTAGAATTCTTGGAGAAAATTAATTTTTTTTGGTGATTTTAAATTGGATTAAAAAAGAATCAAGTAAAAACAGTAATTAATAGTAATAGAGAGTTTAAATTTATTCATTTATGTCTTGTCATAATGGTTGGTACTCGTGCATGTATCTCTAAAAACAAAGTTCAATCTTTGATTATGTGTTTTGTTTTTAAAATGAATTTATTCATTTATGAAGTTTAGGGTTTGAGTTAATACAATCATTCATTCAAAGTTTTAATTAATACAATTTCAAAAGTTTAGGATGTATTTTTAATAAAATTATTGAATGAGGCTGCCCACAATATGTGGCTACCACATAATAATCATCTGATATGAATTATTTTAAATTTTTTTTATCTCCCTTAAATACCAATTATCTAGATATTTTTACATAGTTTCTCATCTCTTATATATAATAATTGTGGTAACCTCCTTCAATAATTTAGGTCACTCATCTTGCTTTAGATGACTTGTAACGACCCCAAATCCTTGAGGTAAATTCCCCTAGTAGATTAAATTAAGTAATTATGCATAAAAAGGGAATTATAATTATTCATATGCATTTATGTATTTACTTAAGTTAAATAGGAAAGTTTCAAAAATTGTATTTATGGTGGTTAGAGAATTTTAGGTGGAGTTAAGGAAAATGTTAGATTTTTGGTAAAGAATAATTTATTCTTATTCTATTTTAGGGCAAATAGAATAAAATAAATATTTTGGTAGAAGTGGAGTGGAATAAAGGATATTTTTACCTTAAAAGTAAAATTGGGAAAATTAGGGTTTAAGGAGGGAGAGGGATTAGGGTTTAGCTTAAACTCACCCTCCTCGTTTTCCGTGCAGTCAAAAAGAAAAAGAAAAAAAAAGAAAAAAAAATAATTCTCTCTCTCCGCCGCATCTCGCTCTCCCCCTTCCTTTTCCCTTTCGCCGCCTCTCCCAGCCTCCCTCTGCTCCGACATCTCTCTCTCTCGCTCCCCTTCAGTTCCCGTGAGTTCCCAGAGGTTTCACGCGAAAGGTGTCGCTGCTTCACGCTGTCGTCGCCCAGTGTGTCGCTGTCCCGTTAAGGGGTATCGCTCTCTCTCTGCGTATCGCTTACTCGGACTCACGTTGTCCCGCTCTCCCTCGGCCAGGCATTCACGCTCTCGGGCTCTCGTGGTATCGCTGTCTCGCTCTCCCGCTGTCTCGCGCTCTCGCTCTCCCGCTCGACTCACGCTTCCCCTCGCCCAGGGTCGCCGCAAGCCTCGGACTCTCGCTCTCTCGCCGGTTCTCGCTGGGTTTCGCTCTCTCGGCTCTCGCGCTCTCGCTCAAATCTCGCTTCTCGCTCGGGATTCGCTCTCACTCGGATTTTTGGCTCTCGGCAGCGGTTCCTTTCCTGTCCGACCAGAACAGTATCCTTAA

mRNA sequence

ATGGCCATGCCTTATTTGCTTCTCATTCTCTTAATCTTCTTGTCTACTTTGCATCCGTGTGATGCTCATCGTCTTCGATTCTTTGAGAGTTTGAGTTCTGTTTCGAGGATTGAACCTCATTCGATCTCTCGAGGGATATGGACACATCCACCGGAGAAAAGTTTTGACAAAAGCAACAATAACAAGGTTTCTTATAAGGAGATTATTGTTGGGATTGAAATATTAAAGGGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGAGTTGAATTCTAAGGAAAATGAGAGGTTTCACGCGAAAGGTGTCGCTGCTTCACGCTGTCGTCGCCCAGTGTGTCGCTGTCCCGTTAAGGGGTATCGCTCTCTCTCTGCGTATCGCTTACTCGGACTCACGTTGTCCCGCTCTCCCTCGGCCAGGCATTCACGCTCTCGGGCTCTCGTGGTATCGCTGTCTCGCTCTCCCGCTGTCTCGCGCTCTCGCTCTCCCGCTCGACTCACGCTTCCCCTCGCCCAGGGTCGCCGCAAGCCTCGGACTCTCGCTCTCTCGCCGGTTCTCGCTGGGTTTCGCTCTCTCGGCTCTCGCGCTCTCGCTCAAATCTCGCTTCTCGCTCGGGATTCGCTCTCACTCGGATTTTTGGCTCTCGGCAGCGGTTCCTTTCCTGTCCGACCAGAACAGTATCCTTAA

Coding sequence (CDS)

ATGGCCATGCCTTATTTGCTTCTCATTCTCTTAATCTTCTTGTCTACTTTGCATCCGTGTGATGCTCATCGTCTTCGATTCTTTGAGAGTTTGAGTTCTGTTTCGAGGATTGAACCTCATTCGATCTCTCGAGGGATATGGACACATCCACCGGAGAAAAGTTTTGACAAAAGCAACAATAACAAGGTTTCTTATAAGGAGATTATTGTTGGGATTGAAATATTAAAGGGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGAGTTGAATTCTAAGGAAAATGAGAGGTTTCACGCGAAAGGTGTCGCTGCTTCACGCTGTCGTCGCCCAGTGTGTCGCTGTCCCGTTAAGGGGTATCGCTCTCTCTCTGCGTATCGCTTACTCGGACTCACGTTGTCCCGCTCTCCCTCGGCCAGGCATTCACGCTCTCGGGCTCTCGTGGTATCGCTGTCTCGCTCTCCCGCTGTCTCGCGCTCTCGCTCTCCCGCTCGACTCACGCTTCCCCTCGCCCAGGGTCGCCGCAAGCCTCGGACTCTCGCTCTCTCGCCGGTTCTCGCTGGGTTTCGCTCTCTCGGCTCTCGCGCTCTCGCTCAAATCTCGCTTCTCGCTCGGGATTCGCTCTCACTCGGATTTTTGGCTCTCGGCAGCGGTTCCTTTCCTGTCCGACCAGAACAGTATCCTTAA

Protein sequence

MAMPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSNNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENERFHAKGVAASRCRRPVCRCPVKGYRSLSAYRLLGLTLSRSPSARHSRSRALVVSLSRSPAVSRSRSPARLTLPLAQGRRKPRTLALSPVLAGFRSLGSRALAQISLLARDSLSLGFLALGSGSFPVRPEQYP

Homology

[Close]

BLAST of ClCG10G002770 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-34
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 3   MPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSNNNK 62
           MPYL LILLIF STLH C+A  LRFFES S VSRIEPHSIS+GIW   PE+SF++SN++K
Sbjct: 1   MPYLFLILLIFSSTLHACEARCLRFFESSSFVSRIEPHSISQGIWADQPERSFEESNSDK 60

Query: 63  VSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENE 103
           +SYKEIIVGIE+LKGMKKHGSRLVMEFPMKEK LNSKENE
Sbjct: 61  LSYKEIIVGIEMLKGMKKHGSRLVMEFPMKEKVLNSKENE 100

[Close]

BLAST of ClCG10G002770 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-33
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 3   MPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSNNNK 62
           MPYL LILLIF STLH C+A  LRFFES S VSRIEPHSIS+GIW   PE+SF++SN++K
Sbjct: 1   MPYLFLILLIFSSTLHACEARCLRFFESSSFVSRIEPHSISQGIWADQPERSFEESNSDK 60

Query: 63  VSYKEIIVGIEILK-GMKKHGSRLVMEFPMKEKELNSKENE 103
           +SYKEIIVGIE+LK GMKKHGSRLVMEFPMKEK LNSKENE
Sbjct: 61  LSYKEIIVGIEMLKQGMKKHGSRLVMEFPMKEKVLNSKENE 101

[Close]

BLAST of ClCG10G002770 vs. NCBI nr
Match: XP_011650407.1 (uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical protein Csa_010787 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 5.2e-26
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAMPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRI-EPHSISRGIWT--HPPEKSFDK 60
           MAMPY  LILL F STLH CDA RLRFF+S + VSRI E HS+S+GIW+  H  E SFDK
Sbjct: 1   MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK 60

Query: 61  SNNNKVSY-KEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENE 103
           +NN+ + + KE I+GIE+LKGMK+ GSRLVMEFPMKEK +NSKENE
Sbjct: 61  NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENE 106

[Close]

BLAST of ClCG10G002770 vs. NCBI nr
Match: XP_022154042.1 (uncharacterized protein LOC111021396 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-09
Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MAMPYLLLILLIFLSTLHPCDA-HRLRFFESLSSVSRIEPHS-ISRGIWTHPPEKSFDKS 60
           MA P LL ILL  LSTLH CDA HRL+ FE  + VSR+   + I +   T  PE+S +K+
Sbjct: 1   MATPSLLFILL--LSTLHACDACHRLQLFEYSNPVSRLGLLAPIPQEFRTDQPERSLNKN 60

Query: 61  NNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKE--LNSKENE 103
             +KVS   + +GI ILKGMKKH  RL MEF MKEKE  ++ +ENE
Sbjct: 61  IIHKVS-SSVEIGIGILKGMKKH-KRLAMEFSMKEKEKLMSYEENE 102

[Close]

BLAST of ClCG10G002770 vs. NCBI nr
Match: KAG7028383.1 (Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MAMPYLLLILLIFLST-LHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSN 60
           M MP  L + L+FLST LH CDA  L+   S    SR+EP  IS G  T+  EKS D+S 
Sbjct: 1   MPMPTSLFLSLLFLSTFLHACDARLLKLCHS----SRLEPCMISPGFRTNQLEKSLDESR 60

Query: 61  NNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMK--------EKELNSKENE 103
           +N VS  E  VGIEILKGMKK   RL ME P++        +K +NS+ENE
Sbjct: 61  SNDVSSME-NVGIEILKGMKKL-RRLAMELPVRDIDRDKDIDKVVNSEENE 105

[Close]

BLAST of ClCG10G002770 vs. ExPASy TrEMBL
Match: A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-26
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAMPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRI-EPHSISRGIWT--HPPEKSFDK 60
           MAMPY  LILL F STLH CDA RLRFF+S + VSRI E HS+S+GIW+  H  E SFDK
Sbjct: 1   MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDK 60

Query: 61  SNNNKVSY-KEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENE 103
           +NN+ + + KE I+GIE+LKGMK+ GSRLVMEFPMKEK +NSKENE
Sbjct: 61  NNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENE 106

[Close]

BLAST of ClCG10G002770 vs. ExPASy TrEMBL
Match: A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MAMPYLLLILLIFLSTLHPCDA-HRLRFFESLSSVSRIEPHS-ISRGIWTHPPEKSFDKS 60
           MA P LL ILL  LSTLH CDA HRL+ FE  + VSR+   + I +   T  PE+S +K+
Sbjct: 1   MATPSLLFILL--LSTLHACDACHRLQLFEYSNPVSRLGLLAPIPQEFRTDQPERSLNKN 60

Query: 61  NNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKE--LNSKENE 103
             +KVS   + +GI ILKGMKKH  RL MEF MKEKE  ++ +ENE
Sbjct: 61  IIHKVS-SSVEIGIGILKGMKKH-KRLAMEFSMKEKEKLMSYEENE 102

[Close]

BLAST of ClCG10G002770 vs. ExPASy TrEMBL
Match: A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 1   MAMPYLLLILLIFLST-LHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSN 60
           M MP  L + L+FLST LH CDA  L+   S    SR+E   IS G      ++S DKS 
Sbjct: 1   MPMPTSLFLALLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRMDQLKRSLDKSK 60

Query: 61  NNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKE----------LNSKENE 103
           +N+VS  E  VGIEILKGMKK   RL ME P+++++          +NS+ENE
Sbjct: 61  SNEVSSVE-NVGIEILKGMKKL-RRLAMELPVRDRDRDKDKDIDKVVNSEENE 107

The following BLAST results are available for this feature:

BLAST of ClCG10G002770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905997.1	1.8e-34	80.00	uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]	[more]
XP_038905996.1	4.4e-33	79.21	uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]	[more]
XP_011650407.1	5.2e-26	67.92	uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical ...	[more]
XP_022154042.1	4.5e-09	52.83	uncharacterized protein LOC111021396 [Momordica charantia]	[more]
KAG7028383.1	2.2e-08	49.55	Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of ClCG10G002770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G002770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L298	2.5e-26	67.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1	[more]
A0A6J1DKL1	2.2e-09	52.83	uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1KZM9	1.3e-06	45.13	uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521...	[more]

BLAST of ClCG10G002770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 56..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G002770.2	ClCG10G002770.2	mRNA