ClCG10G001910 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G001910
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Vacuolar protein sorting 55 (VPS55) family protein
Location	CG_Chr10: 2131675 .. 2134239 (+)
RNA-Seq Expression	ClCG10G001910
Synteny	ClCG10G001910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTTGAGTAACAATGTAACTCAATGAAGAATCCTACATGAATTCTTTTGTATCGCTGTGTTAAGTTTAAGGACAGAGGAGTTGAATTCTTGTGGGAGGAGTTACTTCGATTTTCATTGTTCATGAAGCATTTCAGTTGTAAATGTTCATAAACCATATTTATATTCACTAGATTGGTTTGGTGATTTTGACGTTCGATTTGAAGCTGGAAATGTTTGCCATATTGGTTGTCAATATCAAAATTTTCAAGTCCCTTCTGCCAATTTTTACTCTGTCCTTGTGTAGATGGGTGTTTGAGTAACAATGCCACTCAATGAAGAATTATATAACTCAAAAATACCAATTTATATGTAAAACCGATGCACTTACGAAAATCAACTTTGTGTTCTTTGCCTCCCACTTATCCTCTTGTAGACTTCTCATTTGGAGTTCTTTTTTGTAGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGTCAGTAGAGTCTCTTCGGAAACATTTGATTCTTTGAACAATGTCTTTATACTTCTTGGCTTTAAAAGTCATTTTTGTTATCTCATTTATCATGTGCTATGACAGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGGTATATGACTAAAATTTCTCCTGGATCCTCTTTTACCTTTTACAACATGACGTTTCTTTGCAGCTAAGTTTTTTTTATTTTTTTTTATTTCATATCTTATTTGCTGGACTTGCTATACTGATTTTATTTCTGCCTGTACTGTGGGTGTATGTTTTCCATCCACTTAACTTCTGTTTATATGCAGTATCTTTTAATAATGAGCTTTTTTAGTTACTTTGATTGAATTGCATGGCTAGCTAGAACTAGAAGTGCTTCTCATCTCCATTGTGCTCCACTTGAAACTCTCTTTCTAGTTTCTAGCATTTTTATTGGACATGACTCGCATAATGAAAGAGTAAGGGTTTTGAATTGTTCTTATACAACCAACCCCTCATCCAGAGATGGTTGAAAGGTTGAAATTCAAACCGTTGAATGATAACCAAAGGACAATCCATTTTATTTCCCTGTGTCTCTCTCCTTTTTTCTTTTCTTTTCTTTTTTTTTCTCTCTCTCTCTTTTTAATTATAAATGATTTCCTATTAATTATACTAAAACAGTTCAATAAATTCTGAGACTAAACATTTATGGAGATCAAAATTTTAATCAAAATGATCCATACCATTTGACTGCTACTTGTTACCACAATTTTTATATAGTGATTGTATCGATGGTGTATCACTATAGGCCTTAGCCTCAATTTTATTTATCAACAGCAATGGCAAGATTCAAGAGCTCCCAACCTCCCAATTCTCATAAGAGAACCCAATTACAGAGCATAGCCAAAAAGATACCCCCTCAAAGCAAAACAGTTTGTATATTGTAAACGTTTCATATTTCTAACACTAAGGCCCCTAATAAACAATATTCTTAGGGCCCACACTAAACAAACCTACCTTACCTCACCTTTAGATTCTGTATAATGAGTATGACATAGTCTTTACTCTTTAGAATCTGACATCCCCTTAGTCTCACCAGTTTACATAGTGTATAATGATTTTGACATAATCATCCTGTTTCGATTCAAAAACCCAACTTGAATTTAATATGTTGAACATACATGGATGTTGTGTATATATAATATAGGTTAAATTGCAAATTTGGTCCATATGGTCAGGAGAAGTTGAAATTTAAGGTCTATGATTTGATAAAATATTCATAAATAGAGGACTATCAATGAGATTTTATAGAACCATAAGGTCTAAATTCTAACTTTTAAAATCATAGGGATTAAATCTAACTCTCTCCGAGCCAAGTTTGACCTATATATATATGTATTTTCTTTGTTATGCTTTAATCCAGGTCAGAAGATATATATTTTTCTTGACTAATTTCATGACATCATTCTTTGCAGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAAGTGTTTTTAATCAGTTGAAAACAGTAATTTTAAGATATTGAAAGATTGCCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCCCCTTCTCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

mRNA sequence

ATGGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGTCAGTAGAGTCTCTTCGGAAACATTTGATTCTTTGAACAATGTCTTTATACTTCTTGGCTTTAAAAGTCATTTTTGTTATCTCATTTATCATGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAATAATTTTAAGATATTGAAAGATTGCCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCCCCTTCTCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Coding sequence (CDS)

ATGGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGTCAGTAGAGTCTCTTCGGAAACATTTGATTCTTTGAACAATGTCTTTATACTTCTTGGCTTTAAAAGTCATTTTTGTTATCTCATTTATCATGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTATTCTTTGCGGGGTCAGATAGTTCTTCACTGTATTCTGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAATAATTTTAAGATATTGAAAGATTGCCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCCCCTTCTCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATTGGCTGGGGGGCGATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACAACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Protein sequence

MAFDLNEVSIQPMADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCYLIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSNDRFDFCLCNPFDNNFKILKDCPKQTFVFIKFTYSSPSPHISLSLRQLDQRDEILDRSFDCRKHCHPHHSEACRDHWLGGDGNGPLIVCGIRDCHFVFHGDERRQRLHYVLRYSISMAMKLCYLHQVRLLALFILV

Homology

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: KAG7015678.1 (Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-35
Identity = 107/241 (44.40%), Postives = 112/241 (46.47%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSNDRFDFCLCNPFDNNFK 132
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 133 ILKDCPKQTFVFIKFTYSSPSPHISLSLRQLDQRDEILDRSFDCRKHCHPHHSEACRDHW 192
                                         LDQ DEILDRS D RKHCHPHHSEAC DH 
Sbjct: 121 ------------------------------LDQCDEILDRSLDDRKHCHPHHSEACGDHR 124

Query: 193 LGGDGNGPLIVCGIRDCHFVFHGDERRQRLHYVLRYSISMAM--KLCYLHQVRLLALFIL 252
           LGG+GNGPL+V  IRDCHFVFHGDERR+RLH+VLRY ISMAM  KLCYLH VRLL LFIL
Sbjct: 181 LGGNGNGPLVVRSIRDCHFVFHGDERRRRLHHVLRYCISMAMKLKLCYLHLVRLLVLFIL 124

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: XP_038906097.1 (vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida] >XP_038906098.1 vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-25
Identity = 72/105 (68.57%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQACLSMGKVAFLAILVSGGIVMQIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVMQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DSN+
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSNN 74

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: XP_022923424.1 (vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_022923425.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_023553141.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo] >XP_023553142.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo] >XP_023553143.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-25
Identity = 71/105 (67.62%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DS+D
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSSD 74

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: XP_022965211.1 (vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965212.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965213.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965214.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 6.2e-25
Identity = 71/105 (67.62%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DS D
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSTD 74

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: XP_004150170.1 (vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739448.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739449.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >KGN55797.1 hypothetical protein Csa_009853 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-25
Identity = 71/105 (67.62%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLP SLQACL MGKVAFLAILVSGGIVMQIL                           
Sbjct: 1   MADLPASLQACLGMGKVAFLAILVSGGIVMQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DSND
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSND 74

[Close]

BLAST of ClCG10G001910 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MAD+PG L+ CL MGK+AFLAILVS GIV+QIL                           
Sbjct: 1   MADVPGYLRTCLDMGKIAFLAILVSTGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACAL+NNWWPMLSVIMYVLLPMPLLFF GSDS+SL+++S++
Sbjct: 61  ----ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDN 74

[Close]

BLAST of ClCG10G001910 vs. ExPASy TrEMBL
Match: A0A6J1E6D1 (vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431123 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-25
Identity = 71/105 (67.62%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DS+D
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSSD 74

[Close]

BLAST of ClCG10G001910 vs. ExPASy TrEMBL
Match: A0A6J1HL31 (vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita maxima OX=3661 GN=LOC111465136 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-25
Identity = 71/105 (67.62%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DS D
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSTD 74

[Close]

BLAST of ClCG10G001910 vs. ExPASy TrEMBL
Match: A0A0A0L5B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-25
Identity = 71/105 (67.62%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLP SLQACL MGKVAFLAILVSGGIVMQIL                           
Sbjct: 1   MADLPASLQACLGMGKVAFLAILVSGGIVMQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DSND
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSND 74

[Close]

BLAST of ClCG10G001910 vs. ExPASy TrEMBL
Match: A0A1S3BJT4 (vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 GN=LOC103490815 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 71/105 (67.62%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLP SLQACL MGKVAFLAILVSGGIVMQIL                           
Sbjct: 1   MADLPPSLQACLGMGKVAFLAILVSGGIVMQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLY+DSND
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYTDSND 74

[Close]

BLAST of ClCG10G001910 vs. ExPASy TrEMBL
Match: A0A6J1DML0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111022633 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 70/105 (66.67%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MADLPGSLQAC SMGKVAFLAILVSGGIVMQIL                           
Sbjct: 1   MADLPGSLQACFSMGKVAFLAILVSGGIVMQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACALYNNWWPMLSVIMYVLLPMPLLFF GSDSSSLY++SND
Sbjct: 61  ----ACALYNNWWPMLSVIMYVLLPMPLLFFGGSDSSSLYTESND 74

[Close]

BLAST of ClCG10G001910 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-23
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MAD+PG L+ CL MGK+AFLAILVS GIV+QIL                           
Sbjct: 1   MADVPGYLRTCLDMGKIAFLAILVSTGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACAL+NNWWPMLSVIMYVLLPMPLLFF GSDS+SL+++S++
Sbjct: 61  ----ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDN 74

[Close]

BLAST of ClCG10G001910 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-23
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MAD+PG L+ CL MGK+AFLAILVS GIV+QIL                           
Sbjct: 1   MADVPGYLRTCLDMGKIAFLAILVSTGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACAL+NNWWPMLSVIMYVLLPMPLLFF GSDS+SL+++S++
Sbjct: 61  ----ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDN 74

[Close]

BLAST of ClCG10G001910 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-23
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MAD+PG L+ CL MGK+AFLAILVS GIV+QIL                           
Sbjct: 1   MADVPGYLRTCLDMGKIAFLAILVSTGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACAL+NNWWPMLSVIMYVLLPMPLLFF GSDS+SL+++S++
Sbjct: 61  ----ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDN 74

[Close]

BLAST of ClCG10G001910 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-23
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MAD+PG L+ CL MGK+AFLAILVS GIV+QIL                           
Sbjct: 1   MADVPGYLRTCLDMGKIAFLAILVSTGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACAL+NNWWPMLSVIMYVLLPMPLLFF GSDS+SL+++S++
Sbjct: 61  ----ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDN 74

[Close]

BLAST of ClCG10G001910 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-23
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 13  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILVSRVSSETFDSLNNVFILLGFKSHFCY 72
           MAD+PG L+ CL MGK+AFLAILVS GIV+QIL                           
Sbjct: 1   MADVPGYLRTCLDMGKIAFLAILVSTGIVLQIL--------------------------- 60

Query: 73  LIYHACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSND 118
               ACAL+NNWWPMLSVIMYVLLPMPLLFF GSDS+SL+++S++
Sbjct: 61  ----ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDN 74

The following BLAST results are available for this feature:

BLAST of ClCG10G001910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015678.1	3.9e-35	44.40	Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrospe...	[more]
XP_038906097.1	2.1e-25	68.57	vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida] >XP_0...	[more]
XP_022923424.1	4.8e-25	67.62	vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_...	[more]
XP_022965211.1	6.2e-25	67.62	vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_02...	[more]
XP_004150170.1	8.1e-25	67.62	vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031...	[more]

BLAST of ClCG10G001910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	1.1e-21	55.24	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]

BLAST of ClCG10G001910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6D1	2.3e-25	67.62	vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita moschata OX=...	[more]
A0A6J1HL31	3.0e-25	67.62	vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita maxima OX=36...	[more]
A0A0A0L5B3	3.9e-25	67.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1	[more]
A0A1S3BJT4	6.7e-25	67.62	vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 G...	[more]
A0A6J1DML0	6.7e-25	66.67	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]

BLAST of ClCG10G001910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	8.1e-23	55.24	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	8.1e-23	55.24	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	8.1e-23	55.24	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	8.1e-23	55.24	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	8.1e-23	55.24	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 73..114 e-value: 4.4E-10 score: 39.5
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 76..119 coord: 13..52
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 76..119 coord: 13..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G001910.2	ClCG10G001910.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity