ClCG10G001440 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G001440
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	UDP-N-acetylglucosamine transferase subunit ALG14
Location	CG_Chr10: 1497621 .. 1498759 (+)
RNA-Seq Expression	ClCG10G001440
Synteny	ClCG10G001440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAGGGGTTGATATGTCACTGTGCTAATGGAGCATCGAGGTGTTGGGTAAAAATGTCAAGGGTCGATGTGATGAGCTATGGAAGCAAGTAGTGAAGAACCTAGGGAAGGACTAATATGTTGCTAAGTCATTGGTGCACCTTGGGTAATAATGGTCAAGGTGCAATGCGCAGTTCGAGGCTTTAGGTAAAAATGGTCAAGTGTTAACATTGAATTGGGTAGAAACTGTTCTTATCCAAAAAAATTGTGTAGAAAGTGTTGAGGCCCTGGGTTAAAATAGATAGAGGTCGATGCAACTTGAAGTTTGGTGGGGTTACATAAAACTCTGAATTCTAATATTGATTATGTGAGTTTTTATTTCAATTATAGTATAGGAGAAAATCAAGGCAGTATAACCTCTTCTAATCTCTATTCTACTTTATTGAGTTTCTTCTTTCTCTCGCTTTCTGGCAGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGTCAGATAGCCATCAATTTCATTGACTTGTAGATTTAATCATGTAATTGCCCTGATTGTTGGATATGTAGGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGGTACGCTTTCAAGGTCTTCCAACTTCTCTTGTCTGAGTGAGGAAAGGTGAGGGGATGGCATGAGCAGGGTGTTTCAGTTGCCAATCTTATGACAAACTAGAAGCTCTATTGGGTAGGACAGTGGGGATATTAGTCTACGTGTTGCTTTGGGTTGTGGAACTTGAACTGAGGCTGGGTTCCCTAAAATGAAGATGATCCTTAAAATTTTAGCAAAGTGATAGAAATGTAAAGCTGGTGACTGTGGCCCCTTGGTGGAGCCAAAATTATTTATAAGGACGGGAATAATCTTAGATACCCTCGGGTAA

mRNA sequence

ATGGTCAAGGGGTTGATATGTCACTGTGCTAATGGAGCATCGAGGTGTTGGGTAAAAATGTCAAGGGTCGATGTGATGAGCTATGGAAGCAAGTGCAATGCGCAGTTCGAGGCTTTAGGTAAAAATGGTCAAGTGTTAACATTGAATTGGGTAGAAACTGTTCTTATCCAAAAAAATTGTGTAGAAAGTGTTGAGGCCCTGGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGGTACGCTTTCAAGCAGGGTGTTTCAGTTGCCAATCTTATGACAAACTAGAAGCTCTATTGGGTAGGACAGTGGGGATATTAGTCTACGTGTTGCTTTGGGTTGTGGAACTTGAACTGAGGCTGGCTGGTGACTGTGGCCCCTTGGTGGAGCCAAAATTATTTATAAGGACGGGAATAATCTTAGATACCCTCGGGTAA

Coding sequence (CDS)

ATGGTCAAGGGGTTGATATGTCACTGTGCTAATGGAGCATCGAGGTGTTGGGTAAAAATGTCAAGGGTCGATGTGATGAGCTATGGAAGCAAGTGCAATGCGCAGTTCGAGGCTTTAGGTAAAAATGGTCAAGTGTTAACATTGAATTGGGTAGAAACTGTTCTTATCCAAAAAAATTGTGTAGAAAGTGTTGAGGCCCTGGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGGTACGCTTTCAAGCAGGGTGTTTCAGTTGCCAATCTTATGACAAACTAGAAGCTCTATTGGGTAGGACAGTGGGGATATTAGTCTACGTGTTGCTTTGGGTTGTGGAACTTGAACTGAGGCTGGCTGGTGACTGTGGCCCCTTGGTGGAGCCAAAATTATTTATAAGGACGGGAATAATCTTAGATACCCTCGGGTAA

Protein sequence

MVKGLICHCANGASRCWVKMSRVDVMSYGSKCNAQFEALGKNGQVLTLNWVETVLIQKNCVESVEALGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVRGHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADKVRFQAGCFSCQSYDKLEALLGRTVGILVYVLLWVVELELRLAGDCGPLVEPKLFIRTGIILDTLG

Homology

[Close]

BLAST of ClCG10G001440 vs. NCBI nr
Match: TYK11484.1 (UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-36
Identity = 90/104 (86.54%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 67  LGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GH 126
           +G V LL LMDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GH
Sbjct: 11  IGFVRLLLLMDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGH 70

Query: 127 TAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           TAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 71  TAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 114

[Close]

BLAST of ClCG10G001440 vs. NCBI nr
Match: KAA0053029.1 (UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-36
Identity = 90/103 (87.38%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 68  GIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHT 127
           G V LL LMDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GHT
Sbjct: 3   GFVRLLLLMDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGHT 62

Query: 128 AEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           AEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 63  AEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 105

[Close]

BLAST of ClCG10G001440 vs. NCBI nr
Match: XP_038904772.1 (UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Benincasa hispida])

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-34
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 76  MDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHTAEMLNVLS 135
           MDSSVTIATVILS+SLILSRVLYVIYWSGRPLRNKSLGPV         GHTAEMLNVLS
Sbjct: 1   MDSSVTIATVILSVSLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLS 60

Query: 136 VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 61  VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 95

[Close]

BLAST of ClCG10G001440 vs. NCBI nr
Match: XP_008448662.1 (PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo] >XP_008448663.1 PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo] >XP_008448665.1 PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo] >XP_008448666.1 PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-34
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 76  MDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHTAEMLNVLS 135
           MDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GHTAEMLNVLS
Sbjct: 1   MDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLS 60

Query: 136 VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 61  VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 95

[Close]

BLAST of ClCG10G001440 vs. NCBI nr
Match: XP_004148745.1 (UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Cucumis sativus] >XP_004148746.1 UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Cucumis sativus] >XP_011650339.1 UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Cucumis sativus] >XP_031739300.1 UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Cucumis sativus] >KGN55738.1 hypothetical protein Csa_010806 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-34
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 76  MDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHTAEMLNVLS 135
           MDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GHTAEMLNVLS
Sbjct: 1   MDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLS 60

Query: 136 VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 61  VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 95

[Close]

BLAST of ClCG10G001440 vs. ExPASy Swiss-Prot
Match: O14199 (UDP-N-acetylglucosamine transferase subunit alg14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=alg14 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 5.7e-04
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 117 GHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQL 160
           GHT EMLN+L+ L   L+S R Y+A + D MS+ KA    N L
Sbjct: 45  GHTGEMLNLLNALDDKLYSVRSYVAGSDDTMSVSKASLLSNSL 87

[Close]

BLAST of ClCG10G001440 vs. ExPASy TrEMBL
Match: A0A5D3CJY0 (UDP-N-acetylglucosamine transferase subunit ALG14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001460 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 90/104 (86.54%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 67  LGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GH 126
           +G V LL LMDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GH
Sbjct: 11  IGFVRLLLLMDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGH 70

Query: 127 TAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           TAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 71  TAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 114

[Close]

BLAST of ClCG10G001440 vs. ExPASy TrEMBL
Match: A0A5A7UHT2 (UDP-N-acetylglucosamine transferase subunit ALG14 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G001430 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 90/103 (87.38%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 68  GIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHT 127
           G V LL LMDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GHT
Sbjct: 3   GFVRLLLLMDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGHT 62

Query: 128 AEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           AEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 63  AEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 105

[Close]

BLAST of ClCG10G001440 vs. ExPASy TrEMBL
Match: A0A1S3BK86 (UDP-N-acetylglucosamine transferase subunit ALG14 OS=Cucumis melo OX=3656 GN=LOC103490767 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.0e-35
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 76  MDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHTAEMLNVLS 135
           MDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GHTAEMLNVLS
Sbjct: 1   MDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLS 60

Query: 136 VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 61  VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 95

[Close]

BLAST of ClCG10G001440 vs. ExPASy TrEMBL
Match: A0A0A0L1T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009440 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.0e-35
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 76  MDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHTAEMLNVLS 135
           MDSSVTIATVILSISLILSR+LYVIYWSGRPLRNKSLGPV         GHTAEMLNVLS
Sbjct: 1   MDSSVTIATVILSISLILSRILYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLS 60

Query: 136 VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 61  VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 95

[Close]

BLAST of ClCG10G001440 vs. ExPASy TrEMBL
Match: A0A6J1CUH8 (UDP-N-acetylglucosamine transferase subunit ALG14 OS=Momordica charantia OX=3673 GN=LOC111014889 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 76  MDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVR--------GHTAEMLNVLS 135
           MDSSV IATVILSISLILSRVLYVIYWSGRP+RNKSLGPV         GHTAEMLNVLS
Sbjct: 1   MDSSVAIATVILSISLILSRVLYVIYWSGRPIRNKSLGPVSTLIVLGSGGHTAEMLNVLS 60

Query: 136 VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 163
           VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK
Sbjct: 61  VLQKDLFSPRFYIAAATDNMSLQKARTYENQLADK 95

[Close]

BLAST of ClCG10G001440 vs. TAIR 10
Match: AT4G18230.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-19
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 85  VILSISLILSRVLYVIYWSGRPLRNKS---------LGPVRGHTAEMLNVLSVLQKDLFS 144
           +IL+I L++ RVLYVIY  G+PL   +         LG   GHTAEML++LSVL+KD F+
Sbjct: 22  IILAIVLLMVRVLYVIYRCGKPLPKGASQSFTTLIVLGS-GGHTAEMLSLLSVLRKDRFT 81

Query: 145 PRFYIAAATDNMSLQKARTYENQLADK 163
           PRFYIAAATDNMSLQKAR++E+ LA+K
Sbjct: 82  PRFYIAAATDNMSLQKARSFEDSLAEK 107

The following BLAST results are available for this feature:

BLAST of ClCG10G001440 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11484.1	4.2e-36	86.54	UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo var. makuwa]	[more]
KAA0053029.1	5.4e-36	87.38	UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo var. makuwa]	[more]
XP_038904772.1	1.0e-34	89.47	UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Benincasa hispida]	[more]
XP_008448662.1	1.0e-34	89.47	PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Cucumis melo] >XP_...	[more]
XP_004148745.1	1.0e-34	89.47	UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Cucumis sativus] >XP_...	[more]

BLAST of ClCG10G001440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O14199	5.7e-04	48.84	UDP-N-acetylglucosamine transferase subunit alg14 OS=Schizosaccharomyces pombe (...	[more]

BLAST of ClCG10G001440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJY0	2.0e-36	86.54	UDP-N-acetylglucosamine transferase subunit ALG14 OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7UHT2	2.6e-36	87.38	UDP-N-acetylglucosamine transferase subunit ALG14 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BK86	5.0e-35	89.47	UDP-N-acetylglucosamine transferase subunit ALG14 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0L1T8	5.0e-35	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009440 PE=3 SV=1	[more]
A0A6J1CUH8	2.5e-34	88.42	UDP-N-acetylglucosamine transferase subunit ALG14 OS=Momordica charantia OX=3673...	[more]

BLAST of ClCG10G001440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18230.1	8.4e-19	59.77	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013969	Oligosaccharide biosynthesis protein Alg14-like	PFAM	PF08660	Alg14	coord: 117..163 e-value: 8.7E-10 score: 38.8
IPR013969	Oligosaccharide biosynthesis protein Alg14-like	PANTHER	PTHR12154	GLYCOSYL TRANSFERASE-RELATED	coord: 78..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G001440.1	ClCG10G001440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006488	dolichol-linked oligosaccharide biosynthetic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0043541	UDP-N-acetylglucosamine transferase complex
molecular_function	GO:0016740	transferase activity