ClCG10G000970 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G000970
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 1001618 .. 1002099 (-)
RNA-Seq Expression	ClCG10G000970
Synteny	ClCG10G000970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTATTCGTGTATTATGCGTGCCATTGTTCCTTTCGTTTTTTGGAAACTTTTTCTGTTCATTTTTTTTTCATTAGACGGTCTCAAAAAAAGAATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

mRNA sequence

ATGAAGGACGGTCTCAAAAAAAGAATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Coding sequence (CDS)

ATGAAGGACGGTCTCAAAAAAAGAATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Protein sequence

MKDGLKKRMAEETCPVASRINLLKKLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYCHGECLPPPPPESPSI

Homology

[Close]

BLAST of ClCG10G000970 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-11
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 9   MAEETCPVASRI-NLLKKLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRI 68
           MAE+  P+ASR+   L KLT    +RLCL+  RR +      SDDRKV  R   E Q RI
Sbjct: 1   MAEKKSPMASRLKKALIKLTAV--VRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRI 60

Query: 69  ALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 120
           A NS   +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  AENSFARKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 109

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BLAST of ClCG10G000970 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-08
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 9   MAEETCPVASRI-NLLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 68
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 69  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQ 117
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q
Sbjct: 61  IAESSFVRKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQ 107

[Close]

BLAST of ClCG10G000970 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-07
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 32  LRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQD 91
           LRLCLL R R  R  S    DD+KV  R   E Q RIA +S V +L+   S+S +G  ++
Sbjct: 16  LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLE-RASSSRYGGYEE 75

Query: 92  DVDHRAQIFIHNVRTQLRLQPQVSMQSRY 120
           DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 76  DVDQRAEIFIENFRRQLRLERQISLQLRY 103

[Close]

BLAST of ClCG10G000970 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 9   MAEETCPVASRINLLK-KLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRI 68
           MA++  P+  R+     KLT F  LRLC+ R +  R      SDDR    R F E   RI
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAF--LRLCVARRQNSRRLRSFGSDDRTAGLRSFLE-DERI 60

Query: 69  ALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYC 121
             N SV +L+   S++S+ + +DDVD R+QIFI     QLRL+ Q+S+Q RYC
Sbjct: 61  VENRSVRKLE-RASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYC 109

[Close]

BLAST of ClCG10G000970 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-05
Identity = 52/134 (38.81%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 9   MAEETCPVASRI-NLLKKLTLFPSLRLCLLRPRRPRPPSPRRS---DDRKVSTRRFFEAQ 68
           MAE+  P+  R+   ++K+T    L L L   RR RP    RS    DR V  R F E  
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARR-RPSGRLRSFSFSDRTVGLRSFLE-D 60

Query: 69  RRIALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYCH--- 128
             I  N S+ +L+   S+  +G+ +DDVD R+QIFI N   +LRL+ Q+S+Q RY     
Sbjct: 61  EEIGENCSMRRLE-RASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINS 120

Query: 129 -----GECLPPPPP 131
                 E  PPPPP
Sbjct: 121 SGTEDEERSPPPPP 131

[Close]

BLAST of ClCG10G000970 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-11
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 9   MAEETCPVASRI-NLLKKLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRI 68
           MAE+  P+ASR+   L KLT    +RLCL+  RR +      SDDRKV  R   E Q RI
Sbjct: 1   MAEKKSPMASRLKKALIKLTAV--VRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRI 60

Query: 69  ALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 120
           A NS   +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  AENSFARKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 109

[Close]

BLAST of ClCG10G000970 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 9   MAEETCPVASRI-NLLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 68
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 69  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 120
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of ClCG10G000970 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 52/134 (38.81%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 9   MAEETCPVASRI-NLLKKLTLFPSLRLCLLRPRRPRPPSPRRS---DDRKVSTRRFFEAQ 68
           MAE+  P+  R+   ++K+T    L L L   RR RP    RS    DR V  R F E  
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARR-RPSGRLRSFSFSDRTVGLRSFLE-D 60

Query: 69  RRIALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYCH--- 128
             I  N S+ +L+   S+  +G+ +DDVD R+QIFI N   +LRL+ Q+S+Q RY     
Sbjct: 61  EEIGENCSMRRLE-RASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINS 120

Query: 129 -----GECLPPPPP 131
                 E  PPPPP
Sbjct: 121 SGTEDEERSPPPPP 131

[Close]

BLAST of ClCG10G000970 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 21/67 (31.34%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 66  RIALNSSVTQLQPPTSTSSHG----------SRQDDVDHRAQIFIHNVRTQLRLQPQVSM 123
           R  L ++ T+ +P ++ SS G          S  +D+D++A++FI N   QL+++ Q+S+
Sbjct: 54  RPGLTAAFTENEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISL 113

The following BLAST results are available for this feature:

BLAST of ClCG10G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052985.1	8.0e-11	48.21	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
KAE8650012.1	2.8e-08	48.18	hypothetical protein Csa_009473 [Cucumis sativus]	[more]
XP_011652707.1	2.4e-07	50.56	uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KAG6596691.1	1.2e-06	42.48	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145292.1	2.9e-05	38.81	uncharacterized protein LOC111014780 [Momordica charantia]	[more]

BLAST of ClCG10G000970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G000970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHZ5	3.9e-11	48.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4Z8	7.3e-10	48.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A6J1CW64	1.4e-05	38.81	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of ClCG10G000970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	1.6e-04	31.34	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 89..120 e-value: 6.8E-6 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G000970.2	ClCG10G000970.2	mRNA