ClCG10G000605 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G000605
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LA RNA-binding protein
Location	CG_Chr10: 672398 .. 676422 (-)
RNA-Seq Expression	ClCG10G000605
Synteny	ClCG10G000605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATTCAGGTCTCAAGCCTTAGAAGATCTCGAAACTCAAGTACAATATTCATTTTTAAATTTTTATTTCTTTTCTCATAATTTTTTACTTATGATTATTACTTTTTTTTTTTTTTTTGTGTTTATTGTATATGACTCTATGTTATTTTTATAACCTTCATGATTGAGGAATTAATAAAAATATCAACAATTCTCTATTTTCCAAAAAAACCTTATTTTATTTTAGGGGTTTTTCTTAGGATGATTTTTGGTTTTTTGTTTTGATAACATGTTAAATAATATTTTTTAATTTATTTCTTTTTTTCTTTCTTAACAACTCATATTTGAATCGTCTACCAAACTTTTATAATAAAAACAATTTTTTTTCTTTTTTTATAAAATTGGACTTCATTTTTTTAGACTTTTAAGAAAATTAAATATAAAAATAAAGATAAAAAAAGATTACTAAAGTTTAATAGAAAATTAAACCGTTGGAATTAAGATTTGCAAGATCTTAAAATTTTGCCGACCCTAATTTATGTATTTAAAAAATTAATCGTTTATACATAAGAATTATATTATTTAACTCATAGTTTTAATTTACGTTATGAATACTTTTAGGAATGATACAACTTTTTTATCCTAATCAAGGTAGCAAGATTTCAAAAATATTTTTTAATTTATTGCCAAATTTTTTTTAGGTGCTACCATCGTTACCGCAACGAGGACACTCATCTTTCAAAAATCATAATGGGAGTGATCATATAAATCATAATAATGACTATGAATCACGTTACCACAAAAGCAATTTTATATCCCATAATGGCATAAGTCATTGGTCTTATTACTATCCCTCAAAAAATCAAGGTTGGTTTGTACTTCTTCAATCGTTATCACCGTCACTACAACAACAATATCATATAAATTACAAGAGAGATAATACGTCATATTATTGCAATAATAATTTTCTTCCTAACAACGAAAAAATGGGTTGGGATATTTTCATACAGATTATACAACATCCTCTTTCATGGTGCCAATTAGATCACATGAATATGGTGGTGCAACTTCTTCAAATAATCAAGGTAAATTTCAATTTTGTTGGAAGTTTATTTTTATCTCACATTTTCCACTAAATTTATCTTTCAAAAATATAAAAAAATAAATAGACTTTAAAATAGCATTTTTTTCCTTATATAGCTTGTCTTCTCATCTTAAATATTATTAATACAACAATTAATGTTCTTTTTTTTATTATTAGGATTCTTACCTCTACCGTTGGCTTATTATATCTCTCCTGATTTTGGACAATACAACATGGGTAGCTCGTCTTCAGTACCGTTGCCACCACCACCGCCACCTTATCAAGCAAAATATCCTCATACTAAAGAATTGTATTGGAAAATAGTAAACCAAGTTAATTACTATTTCAGGTATGATATGAGTTTATCATTACAAATAATTATTAGTATTGGATTCCTAACAATTTTGTATCTAACTTTTTTTTATTTTATAAAAAATAAATTGAAGTATCAATATAATTAGATTTATAAATAACCCATCAAAAATTAAACGGATTTATGAAAACTATACTTTTGGGTTTCTAAATAGTGAGTAACATAATAAAATAATTATTTTATAAATCTCAATTATTGGAAATGTTTTTTAATTAACTGGATTTATTTTTGCAGCGATGAAAATTTAAAAGATGACACATATTTAAAGAATCAAATGGATGCAGATGGATGGGTTCCCATTACATTAATAGCTAATTTTCGACAAGTAAGTGATATATATTTTCTTAATGTATTTATGCTTATATATTTTTAGATTTTTCATTTATTTATTATGGATGAATTTCTATTCATTTAAAAAAAATAAAATTAAACGATCTATTCTTTAATTTCTATGCACCTTTGATTTTGATTATTTGCTGAAAAATTATTTTAAGCTTAAATTCTATATTTCATAGTTATCATTAATATGACTTTTGGTGAAAATAGTTATAGTTATCTCTATGAATTTTAACTACTTTTTAAATTAATCTTAAAAATAGAAATGTTGTATAACATATATTATAATTTATTGAATAATAAAATGATAAGAGAGAATAAGATAATCTAATTTATTTTTATTAATATTTATCTTATTTTATTTGATAGGTAAAAAAGTTGACAGATGATATTGGATTTATTTTATTTGCATTACGTGGAGGTTCGAGCGTTGTTGAAGTATCGGTAAGTTTTTATAGAACTTTATCAATTTTTTATTATGAAATTTGAAACTTTTTAATGAATTTTTTTTTGGAATAATTCGATTTAAAACTCTAATTTATTTTTTCAAAAAATAATTCCTTTTTACTTGTGTTTATAACCAGTTGGATATTTTGACTATTTTTCTTTTAATAATATTAATTTTTAATTTTTTTTTTCTCTCATGTATTAGGATCAAAAGATAAGGAGAAAGAGGTGATTACTTTGTTGATCTACAATTTTCAAGAAGAAGAAAAAAAATTTAACTACAGCTTCTATAATTTTGGTTATATTGGTTTTACAAGTGTGAATATTTATTTGTAGGGCTTCTCTAGTTTTTTTTTTTTTTTTTTTATTATTATTTTTTTTTAAGCTTAAGGGAAGGAGTTTCAAATCTTGAAAGTAATCAACTTTTAAGTAAATTTTTTGTGTAAATTTATTCCACTATTAAATTTTTATATCTAATCTATTTTACTCTTTATATTATTAATTTTGTAATTTTGTCTCCAACCTTTCATAAATCTTCAATTGAGCAAGTAGCATTATTATAAAATCACAAGAGCCAAAAATATTCATTTTTGTGAAATCTAAAGGCTAAAATAAGTTTTTGAATGTTTCACATAAACTACTAATATGAAATAATTAAATTTTAGGTTTAAATACTACTTTAATTTCTATACTTTTAGTTTTAGTTCATTTTGGTCCCTATATTTTTAAATCCTATACTTTTAACTTCGGTTCATTTTGATTCATGTACTATTAAAATATTTATTTTGGTCCTTTACTTTTAAAAAGTTAAAAATGAGAAAATAAAGTATATTTGATATATAAAACACTACATTAAGTATGTTTTATAAGTGCATGAACAAGATAATTTGCACAATTTATCGTCTTATATACCAAACAATATATGCTATATGCTATGTATATTTACATTTTTTCAGTATATTTGTAAACATACCAAAAGATAAATTATGGTATATGCAATATATATTTACATTTTCCAGTATATTACCCGTATATTTGACTATACATGAGATTTGAATTTAAAAATGTTCAATTTTCAGCTAGAAATATGAAAGAAAATAAACTGAATATCCTAAAATGAATGAAACATTAATTTGAAGTATCATACATTAAATGAATAACAATCGAAATTAATAAATAACGAAAATAAAGTAGCCAAAATCAGCTTAGCTTAATTAACCTAGTATTTATATTATAAATCTCAAAATCAGAGGTTTGATTCTCATTTTCCACTTATTTTCAAAAAAAAAAAAAAGTTTAAATTCAAAATTATGTTAATAAGGAACAATTAAATATTTATCAAATTTTATTGAGGAGAGATAATGTAATTAATGATATTTTTAAAAAAATAAAAATACTTATATAATTAATACTAAATTCGAAATGATAAATTTTTTAAAATATTGCAAAATTAAAAAATAAAAGAGAATTTATGAAAAAGATTAAAAATGCCCAAAAAATTGCTAAAACTAGTTATAAAATATTATTCAATTTTAGAACATTTGTGAAATATTAGTGATGTAGTAGGCTAATTCCCTAAATTTTTTTGATAGGGCTAAAGAGTGTTTATAGGTAATTGGACTTCCTCGTGTCTAATAACTTCTCATAGCTTAAAAAGTGTGTAACATCTCGAGTTCTAGATCTCGCTCCCACCAGTCATTATCCTCTACCCATTGCACATTTGGTCGACTCTTGCCTAGTTGCCATCGACGATAGTTGCTTGTTGTTGCACCGATTGTCATCACTAGGTGCCATCGTTTAG

mRNA sequence

ATGGAATCATTCAGGTCTCAAGCCTTAGAAGATCTCGAAACTCAAGTGCTACCATCGTTACCGCAACGAGGACACTCATCTTTCAAAAATCATAATGGGAGTGATCATATAAATCATAATAATGACTATGAATCACGTTACCACAAAAGCAATTTTATATCCCATAATGGCATAAGTCATTGGTCTTATTACTATCCCTCAAAAAATCAAGATTATACAACATCCTCTTTCATGGTGCCAATTAGATCACATGAATATGGTGGTGCAACTTCTTCAAATAATCAAGGATTCTTACCTCTACCGTTGGCTTATTATATCTCTCCTGATTTTGGACAATACAACATGGGTAGCTCGTCTTCAGTACCGTTGCCACCACCACCGCCACCTTATCAAGCAAAATATCCTCATACTAAAGAATTGTATTGGAAAATAGTAAACCAAGTTAATTACTATTTCAGCGATGAAAATTTAAAAGATGACACATATTTAAAGAATCAAATGGATGCAGATGGATGGGTTCCCATTACATTAATAGCTAATTTTCGACAACTTAAAAAGTGTGTAACATCTCGAGTTCTAGATCTCGCTCCCACCAGTCATTATCCTCTACCCATTGCACATTTGGTCGACTCTTGCCTAGTTGCCATCGACGATAGTTGCTTGTTGTTGCACCGATTGTCATCACTAGGTGCCATCGTTTAG

Coding sequence (CDS)

ATGGAATCATTCAGGTCTCAAGCCTTAGAAGATCTCGAAACTCAAGTGCTACCATCGTTACCGCAACGAGGACACTCATCTTTCAAAAATCATAATGGGAGTGATCATATAAATCATAATAATGACTATGAATCACGTTACCACAAAAGCAATTTTATATCCCATAATGGCATAAGTCATTGGTCTTATTACTATCCCTCAAAAAATCAAGATTATACAACATCCTCTTTCATGGTGCCAATTAGATCACATGAATATGGTGGTGCAACTTCTTCAAATAATCAAGGATTCTTACCTCTACCGTTGGCTTATTATATCTCTCCTGATTTTGGACAATACAACATGGGTAGCTCGTCTTCAGTACCGTTGCCACCACCACCGCCACCTTATCAAGCAAAATATCCTCATACTAAAGAATTGTATTGGAAAATAGTAAACCAAGTTAATTACTATTTCAGCGATGAAAATTTAAAAGATGACACATATTTAAAGAATCAAATGGATGCAGATGGATGGGTTCCCATTACATTAATAGCTAATTTTCGACAACTTAAAAAGTGTGTAACATCTCGAGTTCTAGATCTCGCTCCCACCAGTCATTATCCTCTACCCATTGCACATTTGGTCGACTCTTGCCTAGTTGCCATCGACGATAGTTGCTTGTTGTTGCACCGATTGTCATCACTAGGTGCCATCGTTTAG

Protein sequence

MESFRSQALEDLETQVLPSLPQRGHSSFKNHNGSDHINHNNDYESRYHKSNFISHNGISHWSYYYPSKNQDYTTSSFMVPIRSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPPPYQAKYPHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQLKKCVTSRVLDLAPTSHYPLPIAHLVDSCLVAIDDSCLLLHRLSSLGAIV

Homology

[Close]

BLAST of ClCG10G000605 vs. NCBI nr
Match: XP_022145446.1 (la-related protein 1B-like [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-23
Identity = 77/165 (46.67%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 23  RGHSSFKNHNGSDHINHNNDYESRYH-KSNFISHNGISHWSYYYPSKNQDYTTSSFMVPI 82
           RG SS    NGSD      DYE +   ++    H  I +  +Y  S    +    F  PI
Sbjct: 3   RGSSS----NGSD------DYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGW---EFCTPI 62

Query: 83  RSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPPPYQAKYPH-TKEL 142
               Y G   SN Q     P+AYYISP+FG  N   +S  P PPPPP     +P  TKEL
Sbjct: 63  DPPPYSGYVLSNPQN----PMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKEL 122

Query: 143 YWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQLK 186
           YWKI+NQVNYYFSDENL+ DT+LK  MD DGWVPI LIA F +++
Sbjct: 123 YWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMR 150

[Close]

BLAST of ClCG10G000605 vs. NCBI nr
Match: XP_031739211.1 (la-related protein 1C-like [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 6.0e-14
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 0


Query: 22  QRGHSSFKNHNGSDHINHNNDYESRYHKSNFISHNGISHWSYYYPSKNQDYTTS-----S 81
           Q+ +S F N N S     NN  +S YH     + N I     YY  +N+ + +S      
Sbjct: 37  QQCNSFFTNFNQS----RNN--KSYYHHQRRAAMNRIE----YYNIQNEIWCSSYHGAWG 96

Query: 82  FMVPIRSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPPPYQAKYPH 141
           + +P+           +  GFLP P+ +YI+  +  YN        +PP P  YQ  Y +
Sbjct: 97  YSIPL--------PMPHPSGFLP-PMVHYINEPYNMYN------PYVPPMPQIYQPPYYY 156

Query: 142 TKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQLKK 187
            K+LYW+I+NQVNYYFSDENL  DT+LK  MD  GWV ITLIA+F ++++
Sbjct: 157 DKKLYWRIINQVNYYFSDENLFKDTFLKRNMDDHGWVWITLIASFPRIQQ 181

[Close]

BLAST of ClCG10G000605 vs. NCBI nr
Match: PNY12787.1 (La-related protein 1B [Trifolium pratense])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-12
Identity = 74/214 (34.58%), Postives = 104/214 (48.60%), Query Frame = 0


Query: 17  LPSLPQRGHSSFKNHNGSDHI----NHNNDYESR-----------YHKSNFISHNGISHW 76
           +P+   +  +SF+N NG  H     +H+N+Y +R            H+ NF   NG  H 
Sbjct: 205 VPNYQPQHRNSFRNRNGGPHPRGDGSHHNNYGNRRDQDRRNQDLNAHQRNF---NGRDH- 264

Query: 77  SYYYPSKNQDYTTSSFMVPIRSHEY-----------GGATSSNNQGFLPLPLAYYISPDF 136
            Y  P   Q +     M  I +  Y            G + +  +  +P P+ Y   P  
Sbjct: 265 -YRSPRFVQQFPRPP-MPAIHAQYYYYSPPPSPIPPFGGSYAYPEPPIPPPMVYGPPPP- 324

Query: 137 GQYNMGSSSSVPLPPPPPPYQAKY--PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMD 196
               M     VP  PPP P  A +  P   EL+ KIVNQ+NYYFS+ENL +DTYLK+QMD
Sbjct: 325 ----MEPLRGVPYVPPPIPPNAIFIQPPITELHTKIVNQINYYFSNENLNNDTYLKSQMD 384

Query: 197 ADGWVPITLIANFRQLKKCVTS--RVLDLAPTSH 201
             GWVP++LIA F+++K    +   VLD   TS+
Sbjct: 385 DQGWVPLSLIAGFKKVKFLTDNIQIVLDAVQTSN 407

[Close]

BLAST of ClCG10G000605 vs. NCBI nr
Match: XP_042038729.1 (la-related protein 1A-like [Salvia splendens])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-10
Identity = 52/133 (39.10%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 66  PSKNQDYTTSSFMVP------IRSHEYGGATSSNNQGFLP-----LPLAYYISPDFGQYN 125
           P    DYTT+ +  P      + S  +   T++ N G+ P      P +  + P F    
Sbjct: 4   PFFTPDYTTNYYYYPPMGFLQLPSSFFTYTTTTTNYGYYPPLGCLQPSSSLVPPPF--LP 63

Query: 126 MGSSSSVPLPPPPPPYQAKYP------HTKELYWKIVNQVNYYFSDENLKDDTYLKNQMD 182
             S SS+  PPPPP   ++ P       T+EL   I NQ+ YYFSD+NL  D YLK  MD
Sbjct: 64  SSSPSSLVHPPPPPFVPSESPLLSLLRETQELRDNIRNQIEYYFSDDNLAKDVYLKQYMD 123

[Close]

BLAST of ClCG10G000605 vs. NCBI nr
Match: XP_019152363.1 (PREDICTED: la-related protein 1C-like isoform X2 [Ipomoea nil])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-10
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 97  FLPLPLAYYISP-DFGQYNMGSSSSVPLPPPPPPYQAKYPHTKELYWKIVNQVNYYFSDE 156
           FLP P+     P  F       SS VP  P PPP    YP    L   ++ Q++YYFSD 
Sbjct: 250 FLPPPIQSLGCPIGFDVATPFMSSYVPTLPRPPPPSMIYPIDTNLSTSLLKQIDYYFSDA 309

Query: 157 NLKDDTYLKNQMDADGWVPITLIANFRQLKKCVTSRVL 194
           NL +D YL+++MD++GWVPI LIANF ++ K +T+ +L
Sbjct: 310 NLDNDHYLRSKMDSEGWVPINLIANFHRVTK-LTNNIL 346

[Close]

BLAST of ClCG10G000605 vs. ExPASy Swiss-Prot
Match: J9VT60 (La RNA-binding domain-containing protein LHP1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=LHP1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-11
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 114 NMGSSSSVPLPPPPPPYQAKYPHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWV 173
           NMG   S  +PPPP P Q   P+   L + ++ QV YYFS +NL  D +L+ QMD++GW+
Sbjct: 687 NMGMYKSASMPPPPMP-QTVVPNLDPLRFYVLGQVEYYFSMQNLAMDFFLRQQMDSEGWI 746

Query: 174 PITLIANFRQLKKCV--TSRVLDLAPTSHY 202
            I +IA+F ++K     TS V +    S+Y
Sbjct: 747 DIAMIASFNRIKSLTPETSIVRECMILSNY 775

[Close]

BLAST of ClCG10G000605 vs. ExPASy Swiss-Prot
Match: Q940X9 (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-08
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 122 PLPPPPPPYQAKY------PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPI 181
           P PP   PY          P   +L  +++ QV YYFSDENL++D YL + MD +GWVP 
Sbjct: 254 PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPT 313

Query: 182 TLIANFRQLK 186
            +IA F+++K
Sbjct: 314 KIIAGFKRVK 323

[Close]

BLAST of ClCG10G000605 vs. ExPASy Swiss-Prot
Match: Q6PKG0 (La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 144 IVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQLKKCVTSRVLDLAPTSHYPL 203
           I  Q+ YYFS +NL+ D +L+ +MDADG++PITLIA+F +++          A T+   L
Sbjct: 407 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQ----------ALTTDISL 466

Query: 204 PIAHLVDSCLVAIDD 219
             A L DS +V I D
Sbjct: 467 IFAALKDSKVVEIVD 471

[Close]

BLAST of ClCG10G000605 vs. ExPASy Swiss-Prot
Match: Q6ZQ58 (La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-06
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 144 IVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQLKKCVT 190
           I  Q+ YYFS +NL+ D +L+ +MDADG++PITLIA+F +++   T
Sbjct: 382 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTT 427

[Close]

BLAST of ClCG10G000605 vs. ExPASy Swiss-Prot
Match: Q8RWR2 (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-06
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 23  RGHSSFKNHNGSDHINHNNDYESRYHKSNFISHNGISHWSYYYPSKNQDYTTSSFMV--- 82
           R  SS+    G  H N  N YE   ++S F   N      +  P +         ++   
Sbjct: 216 RNSSSYPRGEGLHHGNRRN-YE-HGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPP 275

Query: 83  --PIRSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPP-------PY 142
             P  S +Y  A    + G    P+ Y   PD+ Q+       +P P P P       P 
Sbjct: 276 SFPASSAQYMAAPQLGSYGG---PIIY---PDYAQHVF-----MPHPSPDPMGLVGPFPL 335

Query: 143 QAKYPHTKE--LYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQL 185
           Q  Y    +  LY KI+ QV YYFS +NL  D +L++QM+ +GWVP+ +IA FR+L
Sbjct: 336 QPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRL 378

[Close]

BLAST of ClCG10G000605 vs. ExPASy TrEMBL
Match: A0A6J1CWB8 (la-related protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111014890 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 77/165 (46.67%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 23  RGHSSFKNHNGSDHINHNNDYESRYH-KSNFISHNGISHWSYYYPSKNQDYTTSSFMVPI 82
           RG SS    NGSD      DYE +   ++    H  I +  +Y  S    +    F  PI
Sbjct: 3   RGSSS----NGSD------DYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGW---EFCTPI 62

Query: 83  RSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPPPYQAKYPH-TKEL 142
               Y G   SN Q     P+AYYISP+FG  N   +S  P PPPPP     +P  TKEL
Sbjct: 63  DPPPYSGYVLSNPQN----PMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKEL 122

Query: 143 YWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQLK 186
           YWKI+NQVNYYFSDENL+ DT+LK  MD DGWVPI LIA F +++
Sbjct: 123 YWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMR 150

[Close]

BLAST of ClCG10G000605 vs. ExPASy TrEMBL
Match: A0A2K3PBW9 (La-related protein 1B OS=Trifolium pratense OX=57577 GN=L195_g009426 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 74/214 (34.58%), Postives = 104/214 (48.60%), Query Frame = 0


Query: 17  LPSLPQRGHSSFKNHNGSDHI----NHNNDYESR-----------YHKSNFISHNGISHW 76
           +P+   +  +SF+N NG  H     +H+N+Y +R            H+ NF   NG  H 
Sbjct: 205 VPNYQPQHRNSFRNRNGGPHPRGDGSHHNNYGNRRDQDRRNQDLNAHQRNF---NGRDH- 264

Query: 77  SYYYPSKNQDYTTSSFMVPIRSHEY-----------GGATSSNNQGFLPLPLAYYISPDF 136
            Y  P   Q +     M  I +  Y            G + +  +  +P P+ Y   P  
Sbjct: 265 -YRSPRFVQQFPRPP-MPAIHAQYYYYSPPPSPIPPFGGSYAYPEPPIPPPMVYGPPPP- 324

Query: 137 GQYNMGSSSSVPLPPPPPPYQAKY--PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMD 196
               M     VP  PPP P  A +  P   EL+ KIVNQ+NYYFS+ENL +DTYLK+QMD
Sbjct: 325 ----MEPLRGVPYVPPPIPPNAIFIQPPITELHTKIVNQINYYFSNENLNNDTYLKSQMD 384

Query: 197 ADGWVPITLIANFRQLKKCVTS--RVLDLAPTSH 201
             GWVP++LIA F+++K    +   VLD   TS+
Sbjct: 385 DQGWVPLSLIAGFKKVKFLTDNIQIVLDAVQTSN 407

[Close]

BLAST of ClCG10G000605 vs. ExPASy TrEMBL
Match: A0A6P8DUT7 (la-related protein 1C-like OS=Punica granatum OX=22663 GN=LOC116211114 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 65/226 (28.76%), Postives = 99/226 (43.81%), Query Frame = 0


Query: 12  LETQVLPSLP----QRGHSSFKNHNGSDH-INHNNDYESRYHKSNFISHNGISHWSYYYP 71
           L++Q + S P    QR  S+ +NH G +H     N +++R            SH   Y  
Sbjct: 230 LDSQSIKSSPRDDSQRSGSASENHGGHEHQQQQRNSFKTR--SGGTYQRGDGSHSQSYAN 289

Query: 72  SKNQDYTTSSFMVPIRSHEYGGATSSNNQG---------------------FLPLPL-AY 131
            ++QD T   +     +H          +G                     F+PLP   +
Sbjct: 290 RRDQDRTNQEWNPRGFNHNRDARMHQQQRGYPRYGRVSHPAAPVIPPVSGQFIPLPQPRH 349

Query: 132 YISPDFGQYNMGSSSSVPLP--------PPPPPYQAKY-PHTKELYWKIVNQVNYYFSDE 191
           +  P  G YN  +     LP         P PP+   + P    LY KI++Q+NYYFS++
Sbjct: 350 FAVPPMGGYNDMAPPVYVLPFQHPVNFVSPMPPHMVNFQPPDPNLYTKIIDQINYYFSND 409

Query: 192 NLKDDTYLKNQMDADGWVPITLIANFRQLKKCV--TSRVLDLAPTS 200
           NL  DTYL+  MD  GWVP+ LIA+F+++ +    T  +LD+   S
Sbjct: 410 NLVKDTYLRQNMDEQGWVPVALIASFKKILQLTNNTQLILDVVRNS 453

[Close]

BLAST of ClCG10G000605 vs. ExPASy TrEMBL
Match: A0A1S2YSW9 (la-related protein 1C-like OS=Cicer arietinum OX=3827 GN=LOC101504108 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 66/194 (34.02%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 17  LPSLPQRGHSSFKNHNGSDHI----NHNNDYESR-----------YHKSNFISHNGISHW 76
           +P+  Q+  +SF+N NG  H     +H+++Y  R            H+ NF   +     
Sbjct: 195 VPNDHQQHRNSFRNRNGGPHQRGDGSHHHNYGGRRDQDRANQDWNTHRRNFNGRDNYMSP 254

Query: 77  SYY-------YPSKNQDYTTSSFMVPIRSHEYGGATSSNNQGFLPLPLAYYISPDFGQYN 136
            +         PS  Q Y       PIRS  +GG+   +    L  P+ Y   P      
Sbjct: 255 RFVPQFIRPPLPSPGQLYPPPP-PPPIRS--FGGSMGYHE---LAPPMLYIPPP------ 314

Query: 137 MGSSSSVPLPPPPPPYQAKY--PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGW 187
           M S   VP  PPP P  A Y  P   +L+ KIVNQ++YYFS+ENL  D YL+  MD  GW
Sbjct: 315 MESLRGVPFVPPPMPPNAMYFQPQDLQLHTKIVNQIDYYFSNENLIKDIYLRKNMDDQGW 374

[Close]

BLAST of ClCG10G000605 vs. ExPASy TrEMBL
Match: A0A218W5T1 (HTH La-type RNA-binding domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004716 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 65/226 (28.76%), Postives = 99/226 (43.81%), Query Frame = 0


Query: 12  LETQVLPSLP----QRGHSSFKNHNGSDH-INHNNDYESRYHKSNFISHNGISHWSYYYP 71
           L++Q + S P    QR  S+ +NH G +H     N +++R            SH   Y  
Sbjct: 228 LDSQSIKSSPRDDSQRSGSASENHGGHEHQQQQRNSFKTR--SGGTYQRGDGSHSQSYAN 287

Query: 72  SKNQDYTTSSFMVPIRSHEYGGATSSNNQG---------------------FLPLPL-AY 131
            ++QD T   +     +H          +G                     F+PLP   +
Sbjct: 288 RRDQDRTNQEWNPRGFNHNRDARMHQQQRGYPRYGRVSHPAAPVIPPVSGQFIPLPQPRH 347

Query: 132 YISPDFGQYNMGSSSSVPLP--------PPPPPYQAKY-PHTKELYWKIVNQVNYYFSDE 191
           +  P  G YN  +     LP         P PP+   + P    LY KI++Q+NYYFS++
Sbjct: 348 FAVPPMGGYNDMAPPVYVLPFQHPVNFVSPMPPHMVNFQPPDPNLYTKIIDQINYYFSND 407

Query: 192 NLKDDTYLKNQMDADGWVPITLIANFRQLKKCV--TSRVLDLAPTS 200
           NL  DTYL+  MD  GWVP+ LIA+F+++ +    T  +LD+   S
Sbjct: 408 NLVKDTYLRQNMDEQGWVPVALIASFKKILQLTNNTQLILDVVRNS 451

[Close]

BLAST of ClCG10G000605 vs. TAIR 10
Match: AT5G21160.1 (LA RNA-binding protein )

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-09
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 122 PLPPPPPPYQAKY------PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPI 181
           P PP   PY          P   +L  +++ QV YYFSDENL++D YL + MD +GWVP 
Sbjct: 254 PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPT 313

Query: 182 TLIANFRQLK 186
            +IA F+++K
Sbjct: 314 KIIAGFKRVK 323

[Close]

BLAST of ClCG10G000605 vs. TAIR 10
Match: AT5G21160.3 (LA RNA-binding protein )

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-09
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 122 PLPPPPPPYQAKY------PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPI 181
           P PP   PY          P   +L  +++ QV YYFSDENL++D YL + MD +GWVP 
Sbjct: 254 PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPT 313

Query: 182 TLIANFRQLK 186
            +IA F+++K
Sbjct: 314 KIIAGFKRVK 323

[Close]

BLAST of ClCG10G000605 vs. TAIR 10
Match: AT5G21160.2 (LA RNA-binding protein )

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-09
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 122 PLPPPPPPYQAKY------PHTKELYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPI 181
           P PP   PY          P   +L  +++ QV YYFSDENL++D YL + MD +GWVP 
Sbjct: 254 PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPT 313

Query: 182 TLIANFRQLK 186
            +IA F+++K
Sbjct: 314 KIIAGFKRVK 323

[Close]

BLAST of ClCG10G000605 vs. TAIR 10
Match: AT5G66100.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-07
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 23  RGHSSFKNHNGSDHINHNNDYESRYHKSNFISHNGISHWSYYYPSKNQDYTTSSFMV--- 82
           R  SS+    G  H N  N YE   ++S F   N      +  P +         ++   
Sbjct: 217 RNSSSYPRGEGLHHGNRRN-YE-HGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPP 276

Query: 83  --PIRSHEYGGATSSNNQGFLPLPLAYYISPDFGQYNMGSSSSVPLPPPPP-------PY 142
             P  S +Y  A    + G    P+ Y   PD+ Q+       +P P P P       P 
Sbjct: 277 SFPASSAQYMAAPQLGSYGG---PIIY---PDYAQHVF-----MPHPSPDPMGLVGPFPL 336

Query: 143 QAKYPHTKE--LYWKIVNQVNYYFSDENLKDDTYLKNQMDADGWVPITLIANFRQL 185
           Q  Y    +  LY KI+ QV YYFS +NL  D +L++QM+ +GWVP+ +IA FR+L
Sbjct: 337 QPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRL 379

[Close]

BLAST of ClCG10G000605 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-07
Identity = 36/96 (37.50%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 139 ELYWKIVNQVNYYFSDENLKDDTYLKNQM--DADGWVPITLIANFRQLKKCVTSRVLDLA 198
           EL  KI+ QV YYFSDENL  D +L N M  +  G+VPI+ IA F ++KK          
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKL--------- 161

Query: 199 PTSHYPLPIAHLVDSCLVAIDDSCLLLHRLSSLGAI 233
            T  + L ++ L +S  + +      + RLS L  I
Sbjct: 162 -TRDHALIVSALKESSFLVVSADEKKVKRLSPLPEI 187

The following BLAST results are available for this feature:

BLAST of ClCG10G000605 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145446.1	3.2e-23	46.67	la-related protein 1B-like [Momordica charantia]	[more]
XP_031739211.1	6.0e-14	38.24	la-related protein 1C-like [Cucumis sativus]	[more]
PNY12787.1	2.5e-12	34.58	La-related protein 1B [Trifolium pratense]	[more]
XP_042038729.1	1.1e-10	39.10	la-related protein 1A-like [Salvia splendens]	[more]
XP_019152363.1	2.4e-10	43.88	PREDICTED: la-related protein 1C-like isoform X2 [Ipomoea nil]	[more]

BLAST of ClCG10G000605 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
J9VT60	4.9e-11	41.11	La RNA-binding domain-containing protein LHP1 OS=Cryptococcus neoformans var. gr...	[more]
Q940X9	8.7e-08	42.86	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]
Q6PKG0	2.1e-06	42.67	La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2	[more]
Q6ZQ58	2.8e-06	50.00	La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3	[more]
Q8RWR2	3.7e-06	31.25	La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2	[more]

BLAST of ClCG10G000605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWB8	1.5e-23	46.67	la-related protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111014890 PE=4 S...	[more]
A0A2K3PBW9	1.2e-12	34.58	La-related protein 1B OS=Trifolium pratense OX=57577 GN=L195_g009426 PE=4 SV=1	[more]
A0A6P8DUT7	1.9e-10	28.76	la-related protein 1C-like OS=Punica granatum OX=22663 GN=LOC116211114 PE=4 SV=1	[more]
A0A1S2YSW9	1.9e-10	34.02	la-related protein 1C-like OS=Cicer arietinum OX=3827 GN=LOC101504108 PE=4 SV=1	[more]
A0A218W5T1	1.9e-10	28.76	HTH La-type RNA-binding domain-containing protein OS=Punica granatum OX=22663 GN...	[more]

BLAST of ClCG10G000605 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21160.1	6.2e-09	42.86	LA RNA-binding protein	[more]
AT5G21160.3	6.2e-09	42.86	LA RNA-binding protein	[more]
AT5G21160.2	6.2e-09	42.86	LA RNA-binding protein	[more]
AT5G66100.1	2.6e-07	31.25	winged-helix DNA-binding transcription factor family protein	[more]
AT5G46250.1	3.4e-07	37.50	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 138..205 e-value: 1.8E-8 score: 44.1
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 144..188 e-value: 3.8E-18 score: 65.3
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 134..233 score: 18.352177
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 131..226 e-value: 3.7E-20 score: 73.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..28
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 24..186
None	No IPR available	PANTHER	PTHR22792:SF132	LA-RELATED PROTEIN 1B	coord: 24..186
None	No IPR available	CDD	cd07323	LAM	coord: 143..218 e-value: 1.142E-20 score: 80.6537
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 131..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G000605.1	ClCG10G000605.1	mRNA