ClCG10G000540 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G000540
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	SKP1-like protein
Location	CG_Chr10: 606408 .. 608622 (-)
RNA-Seq Expression	ClCG10G000540
Synteny	ClCG10G000540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCAGCCGGCGTGGCAAAAATCGATACGGGACTTTTTCTACCACAAAAATCACAATCTTCTTTCTCTTTCGTTTTTCTCCAAATCCATGTCCTCCTCCAAGAAGATCACTCTAAAGAGCTCCGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAATGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGCCAAGGTCATCGAGTACTGCCACAAGCACGTCGACGCTTCCTCCCCCGATCACCGCCTCTCCGAAGACGACCTCAAAGCCTGGGACCGCGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGTAAAACCTTTTCTTCCCGCCTTAGATCGATGAGCATCGATCCACTTGATTATCTAGGGTTTACCTGTTGGGTATGATATATACACACACACACACATATATATATATATTCAAGAATCAACATTAGAGATTCTTCTGAATCTTTGATTCTGCAAACAATTGCTTTCATGTTTGTAATTGTGCTCTTAGGTGTCTGTAATGTTTGATGTTTTAGAATTGGAACGTTGGTCTTAAAGGAAAATTCTACTGGAAATTATTTAGTATTGAAGTTGTCTATTGTTGATCAATTGCTATGGGGTCTAAATAATGGCAAGTAATTCAGTATGATAGGTATGGTCTTTTCCCTTGATGAATGAAGCCGGTGATTTTGCTGAACTTGGTATTACCGGACATCTATATTTGGCGTCGTTGTCATATTTTTTTCTTTAAGTAATCAAACTTCCATTGAAAAGAAGAAATGAAAGGATACAAGAGCAACCAACAAAACAAGCTTCCAGAAAATAGGAGTCTAAAACTAACTACAGAAAGGACACCAATCCAAAAGACCGAGGCCAATATCGTAATTACACAACGGTCTAATGACCAACGTCCAAACGGAAGCATTAAACCTCACCAACTCTCAAGCTTGCTTACAATAACAAAATATTCTACTCCCTGAAAAGAGAGCTCAAAACCACCTTCTCCAACAAATAACAACCATCCCTATTTCGAGCTCCATGAATCCTAAAAGAACTCTTCACCGATTCCAAAGGAAATTGGCGAACTGCACTCCCACAACAAATGACCCAGATCCTCCTGATGCCTCATGCAAAACACCATTGCAAACCCAAGATGAAGGAGGCATAACTTCAGACATAATCCAAGTATCGACTCTCTCTCTGTCAAACTTGCCTAGCAAAAACCTTAACCTTTTCTGGAACTTTTATCTTCCTCAAAGAGGAGAAGACTAAAGCCTTTGGAGCACCCCATTAGGGGACCACCTCCCGACATCCGTTCTCCAGGATCAATAAGGTAGTCTCGAAGCATAGCAAGGAGATCCCCAGGATGCATCTTCATTGTCAAATGGTTGCAACTTAGGTTAACGTTGATAAACTTGATTTGTTTTCCTTGGTTCTTCTACATCCCTATTTTTTTTTTTTTTAAAAAAAAAAAAAGCTGTGTTCTTGCAGAGAATATCAAGCTGCCTGGGGATTTTTTTACTATTATTGTTGTTCATAGTCGTTTCTTGATTTGGCGCCATGTAAAATTCTCTCCTTCATTCTACAATGCAGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGACTTTTGTGACTTAAGGATCTTGATCAATAAGATCTGCACATGATAGTAGTATATAAGCACTTCTTTTTGGTTCTCTTGTGGTATTCACATTGTTTGCTCTCTCTCTCTCTCGCTCGCTCGCGGAATTATCAAGTTGGAAGCTTCGCACCTACCATTGGTGTTGGATGGATGAGAGAGAAACTACAAAATATATTTTGAACCGTAATCAAAATTTGTGTAATTACAATGGGATTTCATTGATAGATTAATCGTAATAGGTCTCAATCTTAAACATAATTGGATTGCTTTTGATCACGTTTAATTAGGTTTTTTGCAAACGTAAGCTGATTACGATTGTGGTTATAGTAACAGTGATACATTAATAATCCCATTATAACAATAAAAGCTAG

mRNA sequence

CGGCAGCCGGCGTGGCAAAAATCGATACGGGACTTTTTCTACCACAAAAATCACAATCTTCTTTCTCTTTCGTTTTTCTCCAAATCCATGTCCTCCTCCAAGAAGATCACTCTAAAGAGCTCCGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAATGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGCCAAGGTCATCGAGTACTGCCACAAGCACGTCGACGCTTCCTCCCCCGATCACCGCCTCTCCGAAGACGACCTCAAAGCCTGGGACCGCGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGACTTTTGTGACTTAAGGATCTTGATCAATAAGATCTGCACATGATAGTAGTATATAAGCACTTCTTTTTGGTTCTCTTGTGGTATTCACATTGTTTGCTCTCTCTCTCTCTCGCTCGCTCGCGGAATTATCAAGTTGGAAGCTTCGCACCTACCATTGGTGTTGGATGGATGAGAGAGAAACTACAAAATATATTTTGAACCGTAATCAAAATTTGTGTAATTACAATGGGATTTCATTGATAGATTAATCGTAATAGGTCTCAATCTTAAACATAATTGGATTGCTTTTGATCACGTTTAATTAGGTTTTTTGCAAACGTAAGCTGATTACGATTGTGGTTATAGTAACAGTGATACATTAATAATCCCATTATAACAATAAAAGCTAG

Coding sequence (CDS)

ATGTCCTCCTCCAAGAAGATCACTCTAAAGAGCTCCGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAATGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGCCAAGGTCATCGAGTACTGCCACAAGCACGTCGACGCTTCCTCCCCCGATCACCGCCTCTCCGAAGACGACCTCAAAGCCTGGGACCGCGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

Protein sequence

MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of ClCG10G000540 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 147/155 (94.84%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of ClCG10G000540 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDGDSFEVDEAVAL+SQTIRHMIEDDCADNGIPLPNVTS ILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  HKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
            KHVDASS D RLS+DDLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of ClCG10G000540 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 292.0 bits (746), Expect = 3.1e-75
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of ClCG10G000540 vs. NCBI nr
Match: XP_023553541.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60

Query: 61  HKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of ClCG10G000540 vs. NCBI nr
Match: CAB4287843.1 (unnamed protein product [Prunus armeniaca] >CAB4318214.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 285.4 bits (729), Expect = 2.9e-73
Identity = 142/154 (92.21%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 2   SSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 61
           SSSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC 
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 121
           KHVDA+ PD ++SEDDLKAWD+DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of ClCG10G000540 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.7e-66
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           S+KKI LKSSDG+SFEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKILAKVIEYC +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSPDHR------LSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTV 122
           HV+A++           S+DDLKAWD DF+ +DQATLF+LILAAN+LNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of ClCG10G000540 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-65
Identity = 126/171 (73.68%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MS+ +KITLKSSDG++FE+DEAVALESQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDASSPDHRL----------------SEDDLKAWDRDFVNVDQATLFDLILAANFLN 120
            +HV+A+                      S++DLK WD +F+ VDQ TLFDLILAAN+LN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of ClCG10G000540 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.4e-64
Identity = 129/166 (77.71%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 5   KKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV 64
           K ITLKSSDG+ FEV+EAVA+ESQTIRHMIEDDCADNGIPLPNV SKIL+KVIEYC+KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ------------DASSPDHRL---SEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLL 124
                       DA+S    +   S +DLK WD DFV VDQATLFDLILAAN+LNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of ClCG10G000540 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-58
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 7   ITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV-- 66
           ITL+S +G  FEV EAVA+ESQTIRHMIED CAD GIPLPNV++KIL+KVIEYC KHV  
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ----------DASSP----DHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLD 126
                     DA +P     ++  ED+LK +D +FV VDQ+TLFDLILAAN+LNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of ClCG10G000540 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.0e-57
Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           SSK I L SSDG SFEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 122
            HVD ++P   +SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSLLDLTCQTVADMIK
Sbjct: 62  HHVDEANP---ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of ClCG10G000540 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.2e-76
Identity = 147/155 (94.84%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of ClCG10G000540 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of ClCG10G000540 vs. ExPASy TrEMBL
Match: A0A6J5VI66 (SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 142/154 (92.21%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 2   SSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 61
           SSSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC 
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 121
           KHVDA+ PD ++SEDDLKAWD+DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of ClCG10G000540 vs. ExPASy TrEMBL
Match: A0A6P5SPM9 (SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 142/154 (92.21%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 2   SSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 61
           SSSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC 
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 121
           KHVDA+ PD ++SEDDLKAWD DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of ClCG10G000540 vs. ExPASy TrEMBL
Match: A0A5E4E5B6 (SKP1-like protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B008750 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 141/154 (91.56%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 2   SSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 61
           SSSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC 
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 121
           KHVDA+ PD ++S+DDLKAWD+DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISDDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of ClCG10G000540 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 251.9 bits (642), Expect = 3.3e-67
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           S+KKI LKSSDG+SFEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKILAKVIEYC +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSPDHR------LSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTV 122
           HV+A++           S+DDLKAWD DF+ +DQATLF+LILAAN+LNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of ClCG10G000540 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-66
Identity = 126/171 (73.68%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MS+ +KITLKSSDG++FE+DEAVALESQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDASSPDHRL----------------SEDDLKAWDRDFVNVDQATLFDLILAANFLN 120
            +HV+A+                      S++DLK WD +F+ VDQ TLFDLILAAN+LN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of ClCG10G000540 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-58
Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           SSK I L SSDG SFEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 122
            HVD ++P   +SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSLLDLTCQTVADMIK
Sbjct: 62  HHVDEANP---ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of ClCG10G000540 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 221.5 bits (563), Expect = 4.8e-58
Identity = 112/154 (72.73%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           SSK I L SSDG SFEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 122
            HVD ++P   +SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSL DLTCQTVADMIK
Sbjct: 62  YHVDEANP---ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of ClCG10G000540 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 214.9 bits (546), Expect = 4.5e-56
Identity = 108/160 (67.50%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           + K I LKSSDG+SFE++EAVA++SQTI+HMIEDDCADNGIPLPNVT  ILAKVIEYC K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSPD-------HRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQT 122
           HV+A++              D+LK WD +FV VDQ TLFDLILAAN+LNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of ClCG10G000540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965297.1	1.1e-75	94.84	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_038903121.1	2.4e-75	95.48	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022923340.1	3.1e-75	94.19	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_023553541.1	1.5e-74	94.19	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]
CAB4287843.1	2.9e-73	92.21	unnamed protein product [Prunus armeniaca] >CAB4318214.1 unnamed protein product...	[more]

BLAST of ClCG10G000540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	4.7e-66	79.25	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	3.0e-65	73.68	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	4.4e-64	77.71	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	1.2e-58	72.73	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	3.0e-57	73.38	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of ClCG10G000540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJY3	5.2e-76	94.84	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	1.5e-75	94.19	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6J5VI66	1.4e-73	92.21	SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1	[more]
A0A6P5SPM9	2.4e-73	92.21	SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1	[more]
A0A5E4E5B6	3.1e-73	91.56	SKP1-like protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B008750 PE=3 SV=1	[more]

BLAST of ClCG10G000540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	3.3e-67	79.25	S phase kinase-associated protein 1	[more]
AT5G42190.1	2.1e-66	73.68	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	2.2e-58	73.38	SKP1-like 11	[more]
AT4G34470.1	4.8e-58	72.73	SKP1-like 12	[more]
AT1G20140.1	4.5e-56	67.50	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 1.2E-53 score: 194.2
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 1.7E-30 score: 105.0
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 3.6E-68 score: 226.5
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 1.3E-75 score: 255.0
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 5..66
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 4.80804E-60 score: 179.71
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G000540.1	ClCG10G000540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity