ClCG09G016786 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G016786
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionkeratin, type I cytoskeletal 9-like
LocationCG_Chr09: 32812021 .. 32812821 (+)
RNA-Seq ExpressionClCG09G016786
SyntenyClCG09G016786
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACAAGTGTTTGGGATTTATGTTGTTTACAAATGGTCATATGATTGATGGTGTTGATGGAGTTGAATATGATCAGCCAGCATGTGGGGGTTTTAGCATAAATGTGAATAGTGGACTTGTTTTTGAACAATTTGTTGAAATGATTGGGTTGTCACTTGGTGTAGATATGAGACAAACCACTTAGAAATAATATACAGACATCCTAATCTAACACCATTAGGATCTGTAAAGTATACGTCATTTGTAAGCCCCTACAGTTAGTTGAATGGAATGGGCAAGCTAAAACATGGTAGGTGTGGACGCCGAGAGCTTAAGTCATGAGTACCTTGCGTTAAAGAGTATTAAGTGTTGAAGTATATTATGCGTTGGAGAAATCCAAAGTACTGATTGAGAGTTTTCGGTTGTGGTGCAGTATATGAAGATGTGGTTATTAATCGCTAAGTGATATTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGGCTACGCGTTGAAGGTTGGTATGTGTTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCTTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCGTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGCTTGGTATGCGTTGAAGGTTGGTATGCATTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCGTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAGGACCATGCGTTAGTCAGCTATCCGGCGATGGGGCATTGGGCAATTAG

mRNA sequence

ATGGCAGACAAGTGTTTGGGATTTATGTTGTTTACAAATGGTCATATGATTGATGGTGTTGATGGAGTTGAATATGATCAGCCAGCATGTGGGGGTTTTAGCATAAATAAGAGTGGCCGAGAAGGGCTATGCTTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCGTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGCTTGGTATGCGTTGAAGGTTGGTATGCATTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCGTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAGGACCATGCGTTAGTCAGCTATCCGGCGATGGGGCATTGGGCAATTAG

Coding sequence (CDS)

ATGGCAGACAAGTGTTTGGGATTTATGTTGTTTACAAATGGTCATATGATTGATGGTGTTGATGGAGTTGAATATGATCAGCCAGCATGTGGGGGTTTTAGCATAAATAAGAGTGGCCGAGAAGGGCTATGCTTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCGTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAAGCTTGGTATGCGTTGAAGGTTGGTATGCATTGGTGCATAGAAGAGTGGCCGAGAAGGGCTATGCGTTGAAGGTTGGTATGCGTTGGTGCATAGAAGAGTGGCCGAGAGGACCATGCGTTAGTCAGCTATCCGGCGATGGGGCATTGGGCAATTAG

Protein sequence

MADKCLGFMLFTNGHMIDGVDGVEYDQPACGGFSINKSGREGLCFEGWYALVHRRVAEKGYALKVGMRWCIEEWPRSLVCVEGWYALVHRRVAEKGYALKVGMRWCIEEWPRGPCVSQLSGDGALGN
Homology
[Close]
BLAST of ClCG09G016786 vs. NCBI nr
Match: KAA0041167.1 (uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1  MADKCLGFMLFTNGHMIDGVDGVEYDQPACGGFSINKSGREGLCFEGWYALV 53
          MADK LGFMLF NG+MIDG DG++YDQPACGGF+I  S   G+ FE +  +V
Sbjct: 1  MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTI--SVNSGIVFEQFIEIV 50

[Close]
BLAST of ClCG09G016786 vs. NCBI nr
Match: XP_016902058.1 (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1   MADKCLGFMLFTNGHMIDGVDGVEYDQPACGGFSINKSGREGLCFEGWYALV 53
           M +K + F+LFTNGHMI+GVDGV+YDQP CG FSIN + R  + FE +  +V
Sbjct: 197 MTNKYVSFLLFTNGHMINGVDGVDYDQPPCGNFSINWNSR--IVFEQFLQMV 246

[Close]
BLAST of ClCG09G016786 vs. ExPASy TrEMBL
Match: A0A5A7THR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00980 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1  MADKCLGFMLFTNGHMIDGVDGVEYDQPACGGFSINKSGREGLCFEGWYALV 53
          MADK LGFMLF NG+MIDG DG++YDQPACGGF+I  S   G+ FE +  +V
Sbjct: 1  MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTI--SVNSGIVFEQFIEIV 50

[Close]
BLAST of ClCG09G016786 vs. ExPASy TrEMBL
Match: A0A1S4E1F9 (keratin, type I cytoskeletal 9-like OS=Cucumis melo OX=3656 GN=LOC107991514 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.4e-08
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1   MADKCLGFMLFTNGHMIDGVDGVEYDQPACGGFSINKSGREGLCFEGWYALV 53
           M +K + F+LFTNGHMI+GVDGV+YDQP CG FSIN + R  + FE +  +V
Sbjct: 197 MTNKYVSFLLFTNGHMINGVDGVDYDQPPCGNFSINWNSR--IVFEQFLQMV 246

The following BLAST results are available for this feature:
BLAST of ClCG09G016786 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041167.15.4e-0963.46uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa][more]
XP_016902058.11.7e-0757.69PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo][more]
BLAST of ClCG09G016786 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG09G016786 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THR52.6e-0963.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4E1F98.4e-0857.69keratin, type I cytoskeletal 9-like OS=Cucumis melo OX=3656 GN=LOC107991514 PE=4... [more]
BLAST of ClCG09G016786 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G016786.1ClCG09G016786.1mRNA