ClCG09G013470 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G013470
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
LocationCG_Chr09: 19875911 .. 19877620 (-)
RNA-Seq ExpressionClCG09G013470
SyntenyClCG09G013470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATGTGCTAATCAAAGTAGTTGAGCTATTTGAGTGGTGTTCTGGTCAAAAGATTAATTGGGAAAAATCGACGATGTGTGGCATTAATATGGATAATGAAAAGTTGTTGTCTACTTTGTGTCTTCATTGTAAGGTGGAACATTAATATGGATAATGAAAAGTGGTTGTCTACTTTGTGTCTTCATTGTAAGGTGGAATCATTGCCTTTTTTACATCTTGGCCTTCTCTAGGTAATTATACCCCAAGAAAGTTTTGTTTTGGCAGCCTATTATTGACAAAATTCATAAGAAATTAGACCAATGGAAACGCTTCAATTTATCCCGTGGAGAGAGACTTAATTTGAAGTGTGGTCTAAAAGCATTTGGAGGCTTAAAATATAGAAACTTGGCACTATTGCCTAAATGGGGTGGAGATTATCACAGAAATCCGATTTTCTTTGGTGTAAAGTAGTTGTGGATTTTTAGTTAATAGAGGATTTTCCCCAAAACTTACTGTTCAAAATTGACCCTTATCCACTTGATAGCCAAACCTTTTGCTTATACTAGAAATCTTTTGCACTATCAATATAAAAATAAATCAAGTTAAACAGCCTGCTTGGTAGTAAAACTATGCCACAAGAAAGATTAGTAAAGCCGACATTTACAATTTGTACCTCCTCTAATAATATTGCAAATTGAGTGAATTTTCTTTTGAACCTGAAAAGAGTACAAAAAACTTCATTGAAGAGAGATCAAGTGTTAGCTTAGTACCTTCTGATAAATCTACTCTTGCCAATCACCACCATTGGCTTGTCCTGTCTGAGCCGTGGAATCTAAAGATGCTACATAAATGAAATAAAGGTGAGCAGATAGGGAAAATGTGTGTTGGAGGGATATAAGTGAACTGCAGCATAGAGATATTATACTCCCTAGTAATAATAAATTCAGCCTTCATTGAGAACAGTAAAAGTAAAAGGAGAATTGGGGCCAGAGTAGAAGGTTGAAAGGTTAAACAGAAAACGGGGGGCAGGATGATGAATAACACCACCACCGTCCACCACCACCACCAAAACCACCGGTACCAACAAGAACAAAAAAGCATAGAAACAGAAGGTAAAGTGCCAAAAGAAGCTAGGTTTCTTATGATTACTTTTGTAAAACAAGCTAAGCTTTTCAATCTTTCCTTCTGTATATGAGTTTAAACATCCATGAACTACTACTCTAGATAAAGAATCCTAGCAAGGGGCTCTTTCTTCATCAAGATGTTTTTAGTCGAGAAAGCATCAACCACCTCTTTTACTACTGTAGGTTTATTGCTAAGAGCCAGTCTTATACATTTGGATTATTCAACTTATCCTTATGCCTTCCCAATGACATTGAAGACTAGTTATATGAAGTTTGATAGGCCTCGAGTGACTCAAGTATATGTGCGCAAGCGTGTGAGAAGGATTGGAGGTAATACGTGAGAAGTGAGAACGTTTAGTTGAGTGGGCCCCTTGGGAATATTGTTAGTTAGAGGGGCCAAATGAGAGTATGTAAGCCGTTGAGGCTATGGGGGGAGAACTATCTTTTGACATTTTCTTGTATTTGGTTCTCTGAGTGAGAGCTCTTGAATTTTCACTCTGCTTGTTGATAAATGAATTGAGGTCAAGGCCTATCAATTTGGTATCAGAGCAATGATTCTCGGGCATGGTGGACAAGATGGAAAGCAGAGTCATCGTCGTTGA

mRNA sequence

ATGTTGGATGTGCTAATCAAAGTAGTTGAGCTATTTGAGTGGTGTTCTGGTCAAAAGATTAATTGGGAAAAATCGACGATGTGTGGCATTAATATGGATAATGAAAAGTTGTTGTCTACTTTGTGTCTTCATTGTAAGCCTATTATTGACAAAATTCATAAGAAATTAGACCAATGGAAACGCTTCAATTTATCCCGTGGAGAGAGACTTAATTTGAAGTGTGGTCTAAAAGCATTTGGAGGCTTAAAATATAGAAACTTGGCACTATTGCCTAAATGGGGTGGAGATTATCACAGAAATCCGATTTTCTTTGGTGTAAAAGCAATGATTCTCGGGCATGGTGGACAAGATGGAAAGCAGAGTCATCGTCGTTGA

Coding sequence (CDS)

ATGTTGGATGTGCTAATCAAAGTAGTTGAGCTATTTGAGTGGTGTTCTGGTCAAAAGATTAATTGGGAAAAATCGACGATGTGTGGCATTAATATGGATAATGAAAAGTTGTTGTCTACTTTGTGTCTTCATTGTAAGCCTATTATTGACAAAATTCATAAGAAATTAGACCAATGGAAACGCTTCAATTTATCCCGTGGAGAGAGACTTAATTTGAAGTGTGGTCTAAAAGCATTTGGAGGCTTAAAATATAGAAACTTGGCACTATTGCCTAAATGGGGTGGAGATTATCACAGAAATCCGATTTTCTTTGGTGTAAAAGCAATGATTCTCGGGCATGGTGGACAAGATGGAAAGCAGAGTCATCGTCGTTGA

Protein sequence

MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLCLHCKPIIDKIHKKLDQWKRFNLSRGERLNLKCGLKAFGGLKYRNLALLPKWGGDYHRNPIFFGVKAMILGHGGQDGKQSHRR
Homology
BLAST of ClCG09G013470 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 0

Query: 6   IKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLC-LHCK------------------ 65
           ++ +E+FEWCS QK+NWEKS +CGIN++  K+LS    L+CK                  
Sbjct: 114 LRTIEIFEWCSSQKVNWEKSAICGINIEENKMLSVAAQLNCKVKHLPLMYLGLPLGGYPK 173

Query: 66  ------PIIDKIHKKLDQWKRFNLSRGERLNLKCGLKAFGGLKYRNLALLPK 93
                 P+IDK+  KLD+W+RFNLSRG +  L   + +     Y +L LLP+
Sbjct: 174 NVSFWQPVIDKLQGKLDKWRRFNLSRGGKATLCKSVHSNLPTYYLSLFLLPE 225

BLAST of ClCG09G013470 vs. NCBI nr
Match: KAA0044242.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLL---STLC--------------- 60
           ML  L + + LFEWCSG K+NW+KST+ G+NM +++LL     LC               
Sbjct: 21  MLLKLKEAINLFEWCSGHKVNWDKSTLSGVNMGDDELLHMAGKLCCKVEKLPFLYLGLLL 80

Query: 61  -------LHCKPIIDKIHKKLDQWKRFNLSRGERLNLKCGLKAFGGLKYRNLALLPK 93
                  +  +P+ID++HKKLD+WK FN+SRG R  L   + A     Y ++  +P+
Sbjct: 81  GGYPRQKVFWEPMIDRVHKKLDRWKMFNISRGGRQTLCNSILANCPTYYLSIFAIPE 137

BLAST of ClCG09G013470 vs. NCBI nr
Match: XP_038889274.1 (uncharacterized protein LOC120079176 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-11
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLC-LHCK------------- 60
           ML  L + VE F+WCSGQK+NWEKS + GIN+D  +L+ST   L+CK             
Sbjct: 424 MLAKLKQTVEFFKWCSGQKVNWEKSALYGINVDENELISTAASLNCKADHLPFSYLGLPL 483

Query: 61  -----------PIIDKIHKKLDQWKRFNLSRGERLNL 73
                      P+++    KLD+WK FNLSRG R+ L
Sbjct: 484 GGYLKKLSFWQPVLNNFQAKLDKWKHFNLSRGVRVTL 520

BLAST of ClCG09G013470 vs. NCBI nr
Match: KAA0040202.1 (clip-associated protein [Cucumis melo var. makuwa] >TYK25927.1 clip-associated protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-10
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLCLHCKPIIDKIHKKLDQWK 60
           ML  L  V+ LF+WCSGQK+NWEKST+   N+  + L+ T  L     +D+I KKLD+WK
Sbjct: 118 MLLKLKDVIRLFKWCSGQKVNWEKSTLSSANVVEDDLVQTTNL-----LDQIDKKLDRWK 177

Query: 61  RFNLSRGER 70
           R+N+SRG R
Sbjct: 178 RYNISRGGR 181

BLAST of ClCG09G013470 vs. NCBI nr
Match: TYK01565.1 (hypothetical protein E5676_scaffold451G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLC-----LHCKPII------ 60
           M+D L + ++ FEWCSGQK+NW+KS +CGIN+   +LLS        +   P+I      
Sbjct: 190 MMDNLRQTLDFFEWCSGQKVNWDKSALCGINVAESELLSMATTLKDKVDHLPVIYLGLPL 249

Query: 61  --------------DKIHKKLDQWKRFNLSRG 68
                         DK+H KLD+WKRFN SRG
Sbjct: 250 GGYLKQISLWQLVSDKVHAKLDKWKRFNRSRG 281

BLAST of ClCG09G013470 vs. ExPASy TrEMBL
Match: A0A5A7TLN3 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G006040 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-12
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLL---STLC--------------- 60
           ML  L + + LFEWCSG K+NW+KST+ G+NM +++LL     LC               
Sbjct: 21  MLLKLKEAINLFEWCSGHKVNWDKSTLSGVNMGDDELLHMAGKLCCKVEKLPFLYLGLLL 80

Query: 61  -------LHCKPIIDKIHKKLDQWKRFNLSRGERLNLKCGLKAFGGLKYRNLALLPK 93
                  +  +P+ID++HKKLD+WK FN+SRG R  L   + A     Y ++  +P+
Sbjct: 81  GGYPRQKVFWEPMIDRVHKKLDRWKMFNISRGGRQTLCNSILANCPTYYLSIFAIPE 137

BLAST of ClCG09G013470 vs. ExPASy TrEMBL
Match: A0A5A7T9S8 (Clip-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00210 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLCLHCKPIIDKIHKKLDQWK 60
           ML  L  V+ LF+WCSGQK+NWEKST+   N+  + L+ T  L     +D+I KKLD+WK
Sbjct: 118 MLLKLKDVIRLFKWCSGQKVNWEKSTLSSANVVEDDLVQTTNL-----LDQIDKKLDRWK 177

Query: 61  RFNLSRGER 70
           R+N+SRG R
Sbjct: 178 RYNISRGGR 181

BLAST of ClCG09G013470 vs. ExPASy TrEMBL
Match: A0A5D3BQV1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001420 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLC-----LHCKPII------ 60
           M+D L + ++ FEWCSGQK+NW+KS +CGIN+   +LLS        +   P+I      
Sbjct: 190 MMDNLRQTLDFFEWCSGQKVNWDKSALCGINVAESELLSMATTLKDKVDHLPVIYLGLPL 249

Query: 61  --------------DKIHKKLDQWKRFNLSRG 68
                         DK+H KLD+WKRFN SRG
Sbjct: 250 GGYLKQISLWQLVSDKVHAKLDKWKRFNRSRG 281

BLAST of ClCG09G013470 vs. ExPASy TrEMBL
Match: A0A5D3E2E9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-09
Identity = 45/114 (39.47%), Postives = 57/114 (50.00%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTLCLHCKPIIDKIHKKLDQWK 60
           ML+ L K +E FEW SGQKINW KS + G+ +      S   +  KP+IDKI  KL+   
Sbjct: 1   MLETLKKTIEFFEWSSGQKINWGKSALGGLPLGG---YSKQAVFWKPVIDKIQGKLE--- 60

Query: 61  RFNLSRGERLNLKCGLKAFGGLKYRNLALLPKWGGDYHRNPIFFGVKAMILGHG 115
                       K GL   GG++ RNLALL KWG  +        V+ M   HG
Sbjct: 61  ------------KMGL-GLGGIENRNLALLAKWGWIFFNEEKSLWVQIMKSIHG 95

BLAST of ClCG09G013470 vs. ExPASy TrEMBL
Match: A0A5D3BF26 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00080 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.7e-09
Identity = 55/191 (28.80%), Postives = 71/191 (37.17%), Query Frame = 0

Query: 1   MLDVLIKVVELFEWCSGQKINWEKSTMCGINMDNEKLLSTL-CLHCK------------- 60
           ML  L + + LFE CS QK+NWEKS + G+++  + LL T   + CK             
Sbjct: 1   MLLKLKEAIRLFELCSRQKVNWEKSALSGVSIPEDILLQTADRMSCKAENLPIVYLSLPL 60

Query: 61  -----------PIIDKIHKKLDQWKRFNLSRGER-------------------------- 115
                      P+ID+IHKKLD+WK FN+ RG R                          
Sbjct: 61  GGYPQHQDFWQPVIDRIHKKLDRWKHFNIPRGGRQILCNAVLTSLQTYYLSHKMWQSPLE 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880332.12.1e-1339.29uncharacterized protein LOC120071973 [Benincasa hispida][more]
KAA0044242.11.5e-1136.75Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa][more]
XP_038889274.14.3e-1142.27uncharacterized protein LOC120079176 [Benincasa hispida][more]
KAA0040202.13.6e-1052.17clip-associated protein [Cucumis melo var. makuwa] >TYK25927.1 clip-associated p... [more]
TYK01565.11.1e-0941.30hypothetical protein E5676_scaffold451G001420 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TLN37.2e-1236.75Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5A7T9S81.8e-1052.17Clip-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQV15.1e-1041.30Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3E2E95.7e-0939.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BF269.7e-0928.80Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G013470.1ClCG09G013470.1mRNA